2PMZH

Archaeal rna polymerase from sulfolobus solfataricus
Total Genus 5
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
5
sequence length
74
structure length
74
Chain Sequence
IDPRIHYLVPKHEVLNIDEAYKILKELGIRPEQLPWIRASDPVARSINAKPGDIIRIIRKSQLYGEVVSYRYVI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Translation, transferase
publication title The X-ray crystal structure of RNA polymerase from Archaea
pubmed doi rcsb
molecule keywords DNA-directed RNA polymerase subunit A
total genus 5
structure length 74
sequence length 74
chains with identical sequence V
ec nomenclature ec 2.7.7.6: DNA-directed RNA polymerase.
pdb deposition date 2007-04-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
H PF01191 RNA_pol_Rpb5_C RNA polymerase Rpb5, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.940.20 Alpha Beta Alpha-Beta Complex Eukaryotic RPB6 RNA polymerase subunit RPB5-like RNA polymerase subunit 2pmzH00
1I50E 3GTJE 3HKZH 4A3EE 3RZOE 3K7AE 2JA8E 1TWHE 5C4JE 5FJ8E 2NVXE 5M3ME 1R9TE 1I6HE 5FLME 3CQZE 4BY7E 3S2DE 4A3FE 4C3HE 4A93E 4Y52E 4C3IE 2E2JE 3S14E 4BBSE 3GTGE 1EIKA 3S1QE 3GTME 3PO2E 3HOUE 3H0GE 5M5WE 4A3GE 3H3VF 4X6AE 5IYCE 4BBRE 4A3DE 1TWFE 3GTLE 3I4NE 1WCME 5M5YE 2NVTE 1K83E 3HOWE 5C4XE 4QIWH 3S2HE 1TWCE 3GTOE 4A3CE 3HOYE 1SFOE 1Y1WE 5M3FE 2R7ZE 3S1ME 3M4OE 4BXXE 5C3EE 4A3LE 3RZDE 2R93E 2E2HE 2R92E 4A3IE 5IYDE 2JA7E 1TWGE 2JA5E 3GTQE 3S15E 2Y0SH 4AYBH 5C44E 2NVQE 2PMZH 1TWAE 4Y7NE 2YU9E 2WB1H 3HOXE 2NVYE 1Y1VE 3HOVE 3GTKE 2E2IE 5IP9E 2WAQH 3S1NE 2VUME 5M5XE 3GTPE 3S17E 3I4ME 3FKIE 1I3QE 3HOZE 4A3ME 4C3JE 3S16E 4BY1E 1DZFA 2JA6E 4A3BE 4A3JE 2B63E 4A3KE 5IP7E 4C2ME 5IYBE 3S1RE 3PO3E 3M3YE
chains in the Genus database with same CATH superfamily
5IPLE 1I50E 4A3KF 3HOXF 5IP7F 2NVYF 3HKZH 3GTJE 4A3EE 3H3VG 1Y1VF 3EQLE 3S1RF 3HOVF 3RZOE 3K7AE 5IP9F 2JA8E 3M3YF 1I6VE 1TWHE 5FJ8E 5C4JE 4LJZE 2NVXE 5M3ME 1R9TE 1I6HE 5FLME 3CQZE 3GTJF 4A3EF 1HQME 5BYHE 3GTPF 1IW7E 3S1NF 4AYBK 3I4MF 3S17F 2PMZK 4XLPE 4G7HE 2PPBE 2A69E 3FKIF 5FJ8F 4BY7E 1I3QF 3HOZF 2A6EE 1I6HF 2CW0E 4A3MF 1R9TF 3S2DE 4A3FE 3S16F 4C3HE 4A93E 4Y52E 4YFXE 1ZYRE 4C3IE 4ZH4E 2E2JE 3S14E 4BBSE 3GTGE 2WAQK 1EIKA 4Y52F 3GTME 3S1QE 4A3BF 3PO2E 3HOUE 2O5JE 2B63F 3H0GE 5M5WE 4A3GE 3H3VF 4BBSF 4X6AE 5IYCE 4BBRE 4C2MF 5IYBF 1TWFE 3GTLE 3PO3F 4A3DE 4G7OE 2BE5E 3I4NE 1I50F 1WCME 5D4EE 4KN7E 5M5YE 4XLNE 2NVTE 1K83E 3HOWE 2O5IE 1SMYE 3RZOF 4A3DF 5C4XE 3K7AF 4YFNE 4QIWH 3S2HE 2JA8F 1TWCE 1TWHF 4LLGE 5C4JF 1WCMF 2NVXF 4LK1E 4Q5SE 5M3MF 5FLMF 4OIRE 3CQZF 2NVTF 3GTOE 4A3CE 3WODE 3HOYE 1SFOE 1Y1WE 5M3FE 2R7ZE 4BY7F 3S2DF 3S1ME 2A6HE 3M4OE 4A3FF 4BXXE 4XSXE 3HKZK 4Q4ZE 4C3HF 4YFKE 5C3EE 4G7ZE 2YU9F 3HOYF 5M3FF 4A3LE 4JK1E 2R7ZF 4C3IF 3RZDE 2E2JF 3S14F 2E2HE 2R93E 3GTGF 4BXXF 1YNJK 2R92E 4LK0E 5C3EF 4A3IE 3GTMF 3S1QF 5IYDE 2JA7E 4OIPE 3HOUF 1TWGE 2JA5E 3GTQE 3PO2F 3H0GF 5M5WF 3S15E 4A3GF 2E2HF 4X6AF 5TMCE 2R92F 4XSZE 4BBRF 2Y0SH 5IYCF 1TWFF 4KN4E 4AYBH 2Y0SI 5C44E 2NVQE 2PMZH 2JA7F 3GTLF 1TWGF 3I4NF 1TWAE 5M5YF 4Y7NE 2YU9E 2A68E 1K83F 2WB1H 4OIQE 5TMFE 2WB1I 3HOXE 3HOWF 2NVYE 5C4XF 3DXJE 4GZYE 1Y1VE 3HOVE 3GTKE 3S2HF 1TWCF 2E2IE 5IP9E 5D4CE 4MEXE 3GTOF 4A3CF 1QKLA 2WAQH 4MEYE 3S1NE 1SFOF 5M5XE 2VUME 1Y1WF 1YNNK 3GTPE 3GTKF 3S17E 2E2IF 3I4ME 3M4OF 3FKIE 3S1MF 1I3QE 3HOZE 4A3ME 4C3JE 3S16E 2VUMF 5M5XF 4A3LF 4OINE 4BY1E 4QIWK 1DZFA 3RZDF 4KMUE 2R93F 5D4DE 2JA6E 4C3JF 5E18E 4A3IF 2KRXA 5IYDF 4BY1F 4YG2E 4A3BE 2JA5F 3GTQF 4A93F 3S15F 4A3JE 2B63E 4A3KE 2JA6F 5IP7E 5E17E 5C44F 2NVQF 4C2ME 5IYBE 3S1RE 4OIOE 3PO3E 4MQ9E 1TWAF 3M3YE 4Y7NF 4A3JF
chains in the Genus database with same CATH topology
1I50E 3GTJE 3HKZH 4A3EE 3RZOE 3K7AE 2JA8E 1TWHE 5C4JE 5FJ8E 2NVXE 5M3ME 1R9TE 1I6HE 5FLME 3CQZE 4BY7E 3S2DE 4A3FE 4C3HE 4A93E 4Y52E 4C3IE 2E2JE 3S14E 4BBSE 3GTGE 1EIKA 3S1QE 3GTME 3PO2E 3HOUE 3H0GE 5M5WE 4A3GE 3H3VF 4X6AE 5IYCE 4BBRE 4A3DE 1TWFE 3GTLE 3I4NE 1WCME 5M5YE 2NVTE 1K83E 3HOWE 5C4XE 4QIWH 3S2HE 1TWCE 3GTOE 4A3CE 3HOYE 1SFOE 1Y1WE 5M3FE 2R7ZE 3S1ME 3M4OE 4BXXE 5C3EE 4A3LE 3RZDE 2R93E 2E2HE 2R92E 4A3IE 5IYDE 2JA7E 1TWGE 2JA5E 3GTQE 3S15E 2Y0SH 4AYBH 5C44E 2NVQE 2PMZH 1TWAE 4Y7NE 2YU9E 2WB1H 3HOXE 2NVYE 1Y1VE 3HOVE 3GTKE 2E2IE 5IP9E 2WAQH 3S1NE 2VUME 5M5XE 3GTPE 3S17E 3I4ME 3FKIE 1I3QE 3HOZE 4A3ME 4C3JE 3S16E 4BY1E 1DZFA 2JA6E 4A3BE 4A3JE 2B63E 4A3KE 5IP7E 4C2ME 5IYBE 3S1RE 3PO3E 3M3YE
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1I50 E;  3GTJ E;  3HKZ H;  4A3E E;  3RZO E;  3K7A E;  2JA8 E;  1TWH E;  5C4J E;  5FJ8 E;  2NVX E;  5M3M E;  1R9T E;  1I6H E;  5FLM E;  3CQZ E;  4BY7 E;  3S2D E;  4A3F E;  4C3H E;  4A93 E;  4Y52 E;  4C3I E;  2E2J E;  3S14 E;  4BBS E;  3GTG E;  1EIK A;  3S1Q E;  3GTM E;  3PO2 E;  3HOU E;  3H0G E;  5M5W E;  4A3G E;  3H3V F;  4X6A E;  5IYC E;  4BBR E;  4A3D E;  1TWF E;  3GTL E;  3I4N E;  1WCM E;  5M5Y E;  2NVT E;  1K83 E;  3HOW E;  5C4X E;  4QIW H;  3S2H E;  1TWC E;  3GTO E;  4A3C E;  3HOY E;  1SFO E;  1Y1W E;  5M3F E;  2R7Z E;  3S1M E;  3M4O E;  4BXX E;  5C3E E;  4A3L E;  3RZD E;  2R93 E;  2E2H E;  2R92 E;  4A3I E;  5IYD E;  2JA7 E;  1TWG E;  2JA5 E;  3GTQ E;  3S15 E;  2Y0S H;  4AYB H;  5C44 E;  2NVQ E;  2PMZ H;  1TWA E;  4Y7N E;  2YU9 E;  2WB1 H;  3HOX E;  2NVY E;  1Y1V E;  3HOV E;  3GTK E;  2E2I E;  5IP9 E;  2WAQ H;  3S1N E;  2VUM E;  5M5X E;  3GTP E;  3S17 E;  3I4M E;  3FKI E;  1I3Q E;  3HOZ E;  4A3M E;  4C3J E;  3S16 E;  4BY1 E;  1DZF A;  2JA6 E;  4A3B E;  4A3J E;  2B63 E;  4A3K E;  5IP7 E;  4C2M E;  5IYB E;  3S1R E;  3PO3 E;  3M3Y E; 
#chains in the Genus database with same CATH topology
 5IPL E;  1I50 E;  4A3K F;  3HOX F;  5IP7 F;  2NVY F;  3HKZ H;  3GTJ E;  4A3E E;  3H3V G;  1Y1V F;  3EQL E;  3S1R F;  3HOV F;  3RZO E;  3K7A E;  5IP9 F;  2JA8 E;  3M3Y F;  1I6V E;  1TWH E;  5FJ8 E;  5C4J E;  4LJZ E;  2NVX E;  5M3M E;  1R9T E;  1I6H E;  5FLM E;  3CQZ E;  3GTJ F;  4A3E F;  1HQM E;  5BYH E;  3GTP F;  1IW7 E;  3S1N F;  4AYB K;  3I4M F;  3S17 F;  2PMZ K;  4XLP E;  4G7H E;  2PPB E;  2A69 E;  3FKI F;  5FJ8 F;  4BY7 E;  1I3Q F;  3HOZ F;  2A6E E;  1I6H F;  2CW0 E;  4A3M F;  1R9T F;  3S2D E;  4A3F E;  3S16 F;  4C3H E;  4A93 E;  4Y52 E;  4YFX E;  1ZYR E;  4C3I E;  4ZH4 E;  2E2J E;  3S14 E;  4BBS E;  3GTG E;  2WAQ K;  1EIK A;  4Y52 F;  3GTM E;  3S1Q E;  4A3B F;  3PO2 E;  3HOU E;  2O5J E;  2B63 F;  3H0G E;  5M5W E;  4A3G E;  3H3V F;  4BBS F;  4X6A E;  5IYC E;  4BBR E;  4C2M F;  5IYB F;  1TWF E;  3GTL E;  3PO3 F;  4A3D E;  4G7O E;  2BE5 E;  3I4N E;  1I50 F;  1WCM E;  5D4E E;  4KN7 E;  5M5Y E;  4XLN E;  2NVT E;  1K83 E;  3HOW E;  2O5I E;  1SMY E;  3RZO F;  4A3D F;  5C4X E;  3K7A F;  4YFN E;  4QIW H;  3S2H E;  2JA8 F;  1TWC E;  1TWH F;  4LLG E;  5C4J F;  1WCM F;  2NVX F;  4LK1 E;  4Q5S E;  5M3M F;  5FLM F;  4OIR E;  3CQZ F;  2NVT F;  3GTO E;  4A3C E;  3WOD E;  3HOY E;  1SFO E;  1Y1W E;  5M3F E;  2R7Z E;  4BY7 F;  3S2D F;  3S1M E;  2A6H E;  3M4O E;  4A3F F;  4BXX E;  4XSX E;  3HKZ K;  4Q4Z E;  4C3H F;  4YFK E;  5C3E E;  4G7Z E;  2YU9 F;  3HOY F;  5M3F F;  4A3L E;  4JK1 E;  2R7Z F;  4C3I F;  3RZD E;  2E2J F;  3S14 F;  2E2H E;  2R93 E;  3GTG F;  4BXX F;  1YNJ K;  2R92 E;  4LK0 E;  5C3E F;  4A3I E;  3GTM F;  3S1Q F;  5IYD E;  2JA7 E;  4OIP E;  3HOU F;  1TWG E;  2JA5 E;  3GTQ E;  3PO2 F;  3H0G F;  5M5W F;  3S15 E;  4A3G F;  2E2H F;  4X6A F;  5TMC E;  2R92 F;  4XSZ E;  4BBR F;  2Y0S H;  5IYC F;  1TWF F;  4KN4 E;  4AYB H;  2Y0S I;  5C44 E;  2NVQ E;  2PMZ H;  2JA7 F;  3GTL F;  1TWG F;  3I4N F;  1TWA E;  5M5Y F;  4Y7N E;  2YU9 E;  2A68 E;  1K83 F;  2WB1 H;  4OIQ E;  5TMF E;  2WB1 I;  3HOX E;  3HOW F;  2NVY E;  5C4X F;  3DXJ E;  4GZY E;  1Y1V E;  3HOV E;  3GTK E;  3S2H F;  1TWC F;  2E2I E;  5IP9 E;  5D4C E;  4MEX E;  3GTO F;  4A3C F;  1QKL A;  2WAQ H;  4MEY E;  3S1N E;  1SFO F;  5M5X E;  2VUM E;  1Y1W F;  1YNN K;  3GTP E;  3GTK F;  3S17 E;  2E2I F;  3I4M E;  3M4O F;  3FKI E;  3S1M F;  1I3Q E;  3HOZ E;  4A3M E;  4C3J E;  3S16 E;  2VUM F;  5M5X F;  4A3L F;  4OIN E;  4BY1 E;  4QIW K;  1DZF A;  3RZD F;  4KMU E;  2R93 F;  5D4D E;  2JA6 E;  4C3J F;  5E18 E;  4A3I F;  2KRX A;  5IYD F;  4BY1 F;  4YG2 E;  4A3B E;  2JA5 F;  3GTQ F;  4A93 F;  3S15 F;  4A3J E;  2B63 E;  4A3K E;  2JA6 F;  5IP7 E;  5E17 E;  5C44 F;  2NVQ F;  4C2M E;  5IYB E;  3S1R E;  4OIO E;  3PO3 E;  4MQ9 E;  1TWA F;  3M3Y E;  4Y7N F;  4A3J F; 
#chains in the Genus database with same CATH homology
 1I50 E;  3GTJ E;  3HKZ H;  4A3E E;  3RZO E;  3K7A E;  2JA8 E;  1TWH E;  5C4J E;  5FJ8 E;  2NVX E;  5M3M E;  1R9T E;  1I6H E;  5FLM E;  3CQZ E;  4BY7 E;  3S2D E;  4A3F E;  4C3H E;  4A93 E;  4Y52 E;  4C3I E;  2E2J E;  3S14 E;  4BBS E;  3GTG E;  1EIK A;  3S1Q E;  3GTM E;  3PO2 E;  3HOU E;  3H0G E;  5M5W E;  4A3G E;  3H3V F;  4X6A E;  5IYC E;  4BBR E;  4A3D E;  1TWF E;  3GTL E;  3I4N E;  1WCM E;  5M5Y E;  2NVT E;  1K83 E;  3HOW E;  5C4X E;  4QIW H;  3S2H E;  1TWC E;  3GTO E;  4A3C E;  3HOY E;  1SFO E;  1Y1W E;  5M3F E;  2R7Z E;  3S1M E;  3M4O E;  4BXX E;  5C3E E;  4A3L E;  3RZD E;  2R93 E;  2E2H E;  2R92 E;  4A3I E;  5IYD E;  2JA7 E;  1TWG E;  2JA5 E;  3GTQ E;  3S15 E;  2Y0S H;  4AYB H;  5C44 E;  2NVQ E;  2PMZ H;  1TWA E;  4Y7N E;  2YU9 E;  2WB1 H;  3HOX E;  2NVY E;  1Y1V E;  3HOV E;  3GTK E;  2E2I E;  5IP9 E;  2WAQ H;  3S1N E;  2VUM E;  5M5X E;  3GTP E;  3S17 E;  3I4M E;  3FKI E;  1I3Q E;  3HOZ E;  4A3M E;  4C3J E;  3S16 E;  4BY1 E;  1DZF A;  2JA6 E;  4A3B E;  4A3J E;  2B63 E;  4A3K E;  5IP7 E;  4C2M E;  5IYB E;  3S1R E;  3PO3 E;  3M3Y E; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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