The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
124
|
sequence length |
459
|
structure length |
382
|
Chain Sequence |
LTPPQVNSILKANEYSFKVPEFDGKNVSSILGFDSNRLPANAPIEDRRSATTCLQTRGMLLGVFDGHAGCACSQAVSERLFYYIAVSLLPHETLLEIENAVELLPILQWHKHPNDYFSKEASKLYFNGLRTYWQELIDLDIDVKEALINAFKRLDNDISLEAQVGDPNSFLNYLVLRVAFSGATACVAHVDGVDLHVANTGDSRAMLGVQEEDGSWSAVTLSNDHNAQNERELQRLKLEHPKNEAKSVVKQDRLLGLLMPFRAFGDVKFKWSIDLQKRVIESGPDPPNYHTPPYLTAEPEVTYHRLRPQDKFLVLATDGLWETMHRQDVVRIVGEYLTGMHHQQQNAATHLIRHAVGYRDDITIIVVQFNSHVVGAYQNQEQ
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Crystal structure of pyruvate dehydrogenase phosphatase 1 and its functional implications.
pubmed doi rcsb |
| molecule keywords |
[Pyruvate dehydrogenase [lipoamide]]-phosphatase 1
|
| molecule tags |
Hydrolase
|
| source organism |
Rattus norvegicus
|
| total genus |
124
|
| structure length |
382
|
| sequence length |
459
|
| chains with identical sequence |
B
|
| ec nomenclature |
ec
3.1.3.43: [Pyruvate dehydrogenase (acetyl-transferring)]-phosphatase. |
| pdb deposition date | 2007-04-25 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00481 | PP2C | Protein phosphatase 2C |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 4-Layer Sandwich | Phosphatase 2c; domain 1 | PPM-type phosphatase domain |
#chains in the Genus database with same CATH superfamily 3F79 A; 2JFS A; 3KE6 A; 3NMT B; 2CM1 A; 4YZH A; 2XZV A; 3W40 A; 3W43 A; 2JFT A; 5ITI A; 3T9Q A; 5D2U A; 1A6Q A; 3N3C A; 3T91 A; 4LGB B; 3UJK A; 3NMV B; 2J82 A; 3ES2 A; 1TXO A; 3FXJ A; 3KB3 B; 4LA7 B; 4DA1 A; 3W45 A; 4YZG A; 2PK0 A; 5F1M A; 3D8K A; 3RNR A; 4RAG A; 4RAF A; 3KDJ B; 2IRM A; 2ISN A; 2J4O A; 3FXO A; 4N0G A; 2POP A; 3UJL B; 5JO2 B; 3ZVU B; 2I0O A; 4LGA B; 3FXK A; 3FXM A; 3W42 A; 3UJG B; 3PU9 A; 3RT0 A; 2J86 A; 3FXL A; 3W44 A; 3ZT9 A; 3EQ2 A; 3MQ3 A; 4JND A; 2POM A; 5JO1 B; 2V06 A; 4WVO B; 4DS8 B; 4RA2 A; 4OIC B; 2PNQ A; 2IQ1 A; 2JFR A; 3W41 A; 2I44 A; 3NMN B; 4LG5 B; 3JRQ A; 2Y09 A; 3QN1 B; 2P8E A; #chains in the Genus database with same CATH topology 3F79 A; 2JFS A; 3KE6 A; 3NMT B; 2CM1 A; 4YZH A; 2XZV A; 3W40 A; 3W43 A; 2JFT A; 5ITI A; 3T9Q A; 5D2U A; 1A6Q A; 3N3C A; 3T91 A; 4LGB B; 3UJK A; 3NMV B; 2J82 A; 3ES2 A; 1TXO A; 3FXJ A; 3KB3 B; 4LA7 B; 4DA1 A; 3W45 A; 4YZG A; 2PK0 A; 5F1M A; 3D8K A; 3RNR A; 4RAG A; 4RAF A; 3KDJ B; 2IRM A; 2ISN A; 2J4O A; 3FXO A; 4N0G A; 4IIP A; 2POP A; 4IIK A; 3UJL B; 5JO2 B; 3ZVU B; 2I0O A; 4LGA B; 3FXK A; 3FXM A; 3W42 A; 3UJG B; 3PU9 A; 3RT0 A; 2J86 A; 3FXL A; 3W44 A; 3ZT9 A; 3EQ2 A; 3MQ3 A; 4JND A; 2POM A; 5JO1 B; 2V06 A; 4WVO B; 4DS8 B; 4RA2 A; 4OIC B; 2PNQ A; 2IQ1 A; 2JFR A; 3W41 A; 2I44 A; 3NMN B; 4LG5 B; 3JRQ A; 2Y09 A; 3QN1 B; 2P8E A; #chains in the Genus database with same CATH homology 3F79 A; 2JFS A; 3KE6 A; 3NMT B; 2CM1 A; 4YZH A; 2XZV A; 3W40 A; 3W43 A; 2JFT A; 5ITI A; 3T9Q A; 5D2U A; 1A6Q A; 3N3C A; 3T91 A; 4LGB B; 3UJK A; 3NMV B; 2J82 A; 3ES2 A; 1TXO A; 3FXJ A; 3KB3 B; 4LA7 B; 4DA1 A; 3W45 A; 4YZG A; 2PK0 A; 5F1M A; 3D8K A; 3RNR A; 4RAG A; 4RAF A; 3KDJ B; 2IRM A; 2ISN A; 2J4O A; 3FXO A; 4N0G A; 2POP A; 3UJL B; 5JO2 B; 3ZVU B; 2I0O A; 4LGA B; 3FXK A; 3FXM A; 3W42 A; 3UJG B; 3PU9 A; 3RT0 A; 2J86 A; 3FXL A; 3W44 A; 3ZT9 A; 3EQ2 A; 3MQ3 A; 4JND A; 2POM A; 5JO1 B; 2V06 A; 4WVO B; 4DS8 B; 4RA2 A; 4OIC B; 2PNQ A; 2IQ1 A; 2JFR A; 3W41 A; 2I44 A; 3NMN B; 4LG5 B; 3JRQ A; 2Y09 A; 3QN1 B; 2P8E A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
