2V06 | Genus

Total Genus 70

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	70
sequence length	234
structure length	234
Chain Sequence	GMASVLSAATATDQGPVRENNQDACLADGILYAVADGFGARGHHASATALKTLSAGFAAAPDRDGLLEAVQQANLRVFELLGDEPTVSGTTLTAVAVFEPGQGGPLVVNIGDSPLYRIRDGHMEQLTDDHSVAGELVRMGEITRHEARWHPQRHLLTRALGIGPHIGPDVFGIDCGPGDRLLISSDGLFAAADEALIVDAATSPDPQVAVRRLVEVANDAGGSDNTTVVVIDLG

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Hydrolase
source organism	Mycobacterium smegmatis
publication title	Structural and Binding Studies of the Three-Metal Center in Two Mycobacterial Ppm Ser/Thr Protein Phosphatases. pubmed doi rcsb
molecule keywords	SER-THR PHOSPHATASE MSPP
total genus	70
structure length	234
sequence length	234
ec nomenclature	ec 3.1.3.-:
pdb deposition date	2007-05-08

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF13672	PP2C_2	Protein phosphatase 2C

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.60.40.10	Alpha Beta	4-Layer Sandwich	Phosphatase 2c; domain 1	PPM-type phosphatase domain	2v06A00

2CM1A 4JNDA 1A6QA 3W45A 2Y09A 3FXKA 2J82A 5JO2B 1TXOA 3KE6A 3UJGB 3W41A 3MQ3A 4LG5B 5JO1B 4LGAB 2P8EA 3UJLB 3N3CA 3RT0A 2J86A 3W42A 4DS8B 3F79A 3T9QA 2IRMA 3FXMA 3QN1B 4RAFA 4RAGA 5F1MA 4YZHA 3NMNB 2I44A 3RNRA 4WVOB 3FXJA 3NMTB 2JFRA 3ES2A 2IQ1A 2XZVA 3ZT9A 5D2UA 2PK0A 3FXLA 4LGBB 4N0GA 3KDJB 3W44A 4LA7B 3W43A 2PNQA 3D8KA 3EQ2A 2JFTA 3JRQA 3UJKA 4DA1A 2POPA 2J4OA 2POMA 3NMVB 4YZGA 3ZVUB 4OICB 2I0OA 2ISNA 2JFSA 3PU9A 2V06A 3KB3B 4RA2A 3W40A 5ITIA 3FXOA 3T91A
chains in the Genus database with same CATH superfamily

2CM1A 4JNDA 1A6QA 3W45A 2Y09A 3FXKA 2J82A 5JO2B 1TXOA 3KE6A 3UJGB 3W41A 3MQ3A 4LG5B 5JO1B 4LGAB 2P8EA 3UJLB 3N3CA 3RT0A 2J86A 3W42A 4IIPA 4DS8B 3F79A 3T9QA 2IRMA 3FXMA 3QN1B 4RAFA 4RAGA 5F1MA 4YZHA 3NMNB 2I44A 3RNRA 4WVOB 3FXJA 4IIKA 3NMTB 2JFRA 3ES2A 2IQ1A 2XZVA 3ZT9A 5D2UA 2PK0A 3FXLA 4LGBB 4N0GA 3KDJB 3W44A 4LA7B 3W43A 2PNQA 3D8KA 3EQ2A 2JFTA 3JRQA 3UJKA 4DA1A 2POPA 2J4OA 2POMA 3NMVB 4YZGA 3ZVUB 4OICB 2I0OA 2ISNA 2JFSA 3PU9A 2V06A 3KB3B 4RA2A 3W40A 5ITIA 3FXOA 3T91A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 2CM1 A;  4JND A;  1A6Q A;  3W45 A;  2Y09 A;  3FXK A;  2J82 A;  5JO2 B;  1TXO A;  3KE6 A;  3UJG B;  3W41 A;  3MQ3 A;  4LG5 B;  5JO1 B;  4LGA B;  2P8E A;  3UJL B;  3N3C A;  3RT0 A;  2J86 A;  3W42 A;  4DS8 B;  3F79 A;  3T9Q A;  2IRM A;  3FXM A;  3QN1 B;  4RAF A;  4RAG A;  5F1M A;  4YZH A;  3NMN B;  2I44 A;  3RNR A;  4WVO B;  3FXJ A;  3NMT B;  2JFR A;  3ES2 A;  2IQ1 A;  2XZV A;  3ZT9 A;  5D2U A;  2PK0 A;  3FXL A;  4LGB B;  4N0G A;  3KDJ B;  3W44 A;  4LA7 B;  3W43 A;  2PNQ A;  3D8K A;  3EQ2 A;  2JFT A;  3JRQ A;  3UJK A;  4DA1 A;  2POP A;  2J4O A;  2POM A;  3NMV B;  4YZG A;  3ZVU B;  4OIC B;  2I0O A;  2ISN A;  2JFS A;  3PU9 A;  2V06 A;  3KB3 B;  4RA2 A;  3W40 A;  5ITI A;  3FXO A;  3T91 A; 
#chains in the Genus database with same CATH topology
 2CM1 A;  4JND A;  1A6Q A;  3W45 A;  2Y09 A;  3FXK A;  2J82 A;  5JO2 B;  1TXO A;  3KE6 A;  3UJG B;  3W41 A;  3MQ3 A;  4LG5 B;  5JO1 B;  4LGA B;  2P8E A;  3UJL B;  3N3C A;  3RT0 A;  2J86 A;  3W42 A;  4IIP A;  4DS8 B;  3F79 A;  3T9Q A;  2IRM A;  3FXM A;  3QN1 B;  4RAF A;  4RAG A;  5F1M A;  4YZH A;  3NMN B;  2I44 A;  3RNR A;  4WVO B;  3FXJ A;  4IIK A;  3NMT B;  2JFR A;  3ES2 A;  2IQ1 A;  2XZV A;  3ZT9 A;  5D2U A;  2PK0 A;  3FXL A;  4LGB B;  4N0G A;  3KDJ B;  3W44 A;  4LA7 B;  3W43 A;  2PNQ A;  3D8K A;  3EQ2 A;  2JFT A;  3JRQ A;  3UJK A;  4DA1 A;  2POP A;  2J4O A;  2POM A;  3NMV B;  4YZG A;  3ZVU B;  4OIC B;  2I0O A;  2ISN A;  2JFS A;  3PU9 A;  2V06 A;  3KB3 B;  4RA2 A;  3W40 A;  5ITI A;  3FXO A;  3T91 A; 
#chains in the Genus database with same CATH homology
 2CM1 A;  4JND A;  1A6Q A;  3W45 A;  2Y09 A;  3FXK A;  2J82 A;  5JO2 B;  1TXO A;  3KE6 A;  3UJG B;  3W41 A;  3MQ3 A;  4LG5 B;  5JO1 B;  4LGA B;  2P8E A;  3UJL B;  3N3C A;  3RT0 A;  2J86 A;  3W42 A;  4DS8 B;  3F79 A;  3T9Q A;  2IRM A;  3FXM A;  3QN1 B;  4RAF A;  4RAG A;  5F1M A;  4YZH A;  3NMN B;  2I44 A;  3RNR A;  4WVO B;  3FXJ A;  3NMT B;  2JFR A;  3ES2 A;  2IQ1 A;  2XZV A;  3ZT9 A;  5D2U A;  2PK0 A;  3FXL A;  4LGB B;  4N0G A;  3KDJ B;  3W44 A;  4LA7 B;  3W43 A;  2PNQ A;  3D8K A;  3EQ2 A;  2JFT A;  3JRQ A;  3UJK A;  4DA1 A;  2POP A;  2J4O A;  2POM A;  3NMV B;  4YZG A;  3ZVU B;  4OIC B;  2I0O A;  2ISN A;  2JFS A;  3PU9 A;  2V06 A;  3KB3 B;  4RA2 A;  3W40 A;  5ITI A;  3FXO A;  3T91 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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2V06A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations