2XQNT

Complex of the 2nd and 3rd lim domains of tes with the evh1 domain of mena and the n-terminal domain of actin-like protein arp7a
Total Genus 20
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
20
sequence length
125
structure length
125
Chain Sequence
EKPRCAGCDELIFSNEYTQAENQNWHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHAVVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKRMS
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Metal binding protein
source organism Homo sapiens
publication title Molecular recognition of the Tes LIM2-3 domains by the actin-related protein Arp7A.
pubmed doi rcsb
molecule keywords ACTIN-LIKE PROTEIN 7A
total genus 20
structure length 125
sequence length 125
ec nomenclature
pdb deposition date 2010-09-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
T PF00412 LIM LIM domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.110.10 Mainly Beta Ribbon Cysteine Rich Protein Cysteine Rich Protein 2xqnT02
2.10.110.10 Mainly Beta Ribbon Cysteine Rich Protein Cysteine Rich Protein 2xqnT01
2DFYC 1WIGA 4JCJA 3F6QB 2CORA 2L4ZA 2D8YA 1M3VA 2CURA 2O10A 2DARA 1X68A 2CUQA 2KBXB 2YPAC 1B8TA 2CUPA 2D8XA 1IBIA 2LXDA 1WYHA 1X63A 1J2OA 1X3HA 2XJZA 2MBVA 1G47A 1CXXA 1X62A 2MIUA 4HI8B 1RUTX 1A7IA 2JTNA 3IXEB 2XQNT 2CO8A 2DJ7A 1CTLA 4HI9B 1X64A 2L6ZC 2EHEA 1NYPA 1X4LA 2IYBE 2D8ZA 2DLOA 1X6AA 2L6YB 2CU8A 3MMKA 1IMLA 1X61A 1QLIA 1U5SB 2LZUA 4KFZA 1V6GA 2O13A 2XJYA 2EGQA
chains in the Genus database with same CATH superfamily
2CORA 5FY7A 5LKZA 2YPAC 1IBIA 2CUPA 2D8XA 4UF0B 3AVRA 4UF0A 1CXXA 3NIJA 1RUTX 5FXWA 5LKTA 3IXEB 2XQNT 2CO8A 4EZHA 4HI9B 1X64A 1IMLA 4ASKA 1QLIA 2LZUA 5FXZA 3NINA 2XJYA 1WIGA 5LKUA 1M3VA 5FXXA 1X68A 2CUQA 2KBXB 3NISA 5FY0A 1X3HA 3ZPOA 2XUEA 5FXVA 4BHWA 4HI8B 1CTLA 2EHEA 1NYPA 3MMKA 1X61A 3NIMA 5FYMA 2DFYC 4JCJA 3F6QB 4EYUA 2L4ZA 2D8YA 2CURA 2DARA 1B8TA 1WYHA 1X63A 2XJZA 3ZLIA 1A7IA 2JTNA 2L6ZC 1X4LA 2IYBE 3NIKA 3NIHA 5FY1A 5LKXA 2CU8A 1U5SB 4KFZA 2DLOA 1V6GA 2O13A 5FP3A 2O10A 2LXDA 3AVSA 1J2OA 2MBVA 3NILA 1G47A 1X62A 2MIUA 5A1LA 2DJ7A 4EZ4A 2D8ZA 1X6AA 2L6YB 2EGQA
chains in the Genus database with same CATH topology
2CORA 5FY7A 5LKZA 2YPAC 1IBIA 2CUPA 2D8XA 4UF0B 3AVRA 4UF0A 1CXXA 3NIJA 1RUTX 5FXWA 5LKTA 3IXEB 2XQNT 2CO8A 4EZHA 4HI9B 1X64A 1IMLA 4ASKA 1QLIA 2LZUA 5FXZA 3NINA 2XJYA 1WIGA 5LKUA 1M3VA 5FXXA 1X68A 2CUQA 2KBXB 3NISA 5FY0A 1X3HA 3ZPOA 2XUEA 5FXVA 4BHWA 4HI8B 1CTLA 2EHEA 1NYPA 3MMKA 1X61A 3NIMA 5FYMA 2DFYC 4JCJA 3F6QB 4EYUA 2L4ZA 2D8YA 2CURA 2DARA 1B8TA 1WYHA 1X63A 2XJZA 3ZLIA 1A7IA 2JTNA 2L6ZC 1X4LA 2IYBE 3NIKA 3NIHA 5FY1A 5LKXA 2CU8A 1U5SB 4KFZA 2DLOA 1V6GA 2O13A 5FP3A 2O10A 2LXDA 3AVSA 1J2OA 2MBVA 3NILA 1G47A 1X62A 2MIUA 5A1LA 2DJ7A 4EZ4A 2D8ZA 1X6AA 2L6YB 2EGQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2DFY C;  1WIG A;  4JCJ A;  3F6Q B;  2COR A;  2L4Z A;  2D8Y A;  1M3V A;  2CUR A;  2O10 A;  2DAR A;  1X68 A;  2CUQ A;  2KBX B;  2YPA C;  1B8T A;  2CUP A;  2D8X A;  1IBI A;  2LXD A;  1WYH A;  1X63 A;  1J2O A;  1X3H A;  2XJZ A;  2MBV A;  1G47 A;  1CXX A;  1X62 A;  2MIU A;  4HI8 B;  1RUT X;  1A7I A;  2JTN A;  3IXE B;  2XQN T;  2CO8 A;  2DJ7 A;  1CTL A;  4HI9 B;  1X64 A;  2L6Z C;  2EHE A;  1NYP A;  1X4L A;  2IYB E;  2D8Z A;  2DLO A;  1X6A A;  2L6Y B;  2CU8 A;  3MMK A;  1IML A;  1X61 A;  1QLI A;  1U5S B;  2LZU A;  4KFZ A;  1V6G A;  2O13 A;  2XJY A;  2EGQ A; 
#chains in the Genus database with same CATH topology
 2COR A;  5FY7 A;  5LKZ A;  2YPA C;  1IBI A;  2CUP A;  2D8X A;  4UF0 B;  3AVR A;  4UF0 A;  1CXX A;  3NIJ A;  1RUT X;  5FXW A;  5LKT A;  3IXE B;  2XQN T;  2CO8 A;  4EZH A;  4HI9 B;  1X64 A;  1IML A;  4ASK A;  1QLI A;  2LZU A;  5FXZ A;  3NIN A;  2XJY A;  1WIG A;  5LKU A;  1M3V A;  5FXX A;  1X68 A;  2CUQ A;  2KBX B;  3NIS A;  5FY0 A;  1X3H A;  3ZPO A;  2XUE A;  5FXV A;  4BHW A;  4HI8 B;  1CTL A;  2EHE A;  1NYP A;  3MMK A;  1X61 A;  3NIM A;  5FYM A;  2DFY C;  4JCJ A;  3F6Q B;  4EYU A;  2L4Z A;  2D8Y A;  2CUR A;  2DAR A;  1B8T A;  1WYH A;  1X63 A;  2XJZ A;  3ZLI A;  1A7I A;  2JTN A;  2L6Z C;  1X4L A;  2IYB E;  3NIK A;  3NIH A;  5FY1 A;  5LKX A;  2CU8 A;  1U5S B;  4KFZ A;  2DLO A;  1V6G A;  2O13 A;  5FP3 A;  2O10 A;  2LXD A;  3AVS A;  1J2O A;  2MBV A;  3NIL A;  1G47 A;  1X62 A;  2MIU A;  5A1L A;  2DJ7 A;  4EZ4 A;  2D8Z A;  1X6A A;  2L6Y B;  2EGQ A; 
#chains in the Genus database with same CATH homology
 2COR A;  5FY7 A;  5LKZ A;  2YPA C;  1IBI A;  2CUP A;  2D8X A;  4UF0 B;  3AVR A;  4UF0 A;  1CXX A;  3NIJ A;  1RUT X;  5FXW A;  5LKT A;  3IXE B;  2XQN T;  2CO8 A;  4EZH A;  4HI9 B;  1X64 A;  1IML A;  4ASK A;  1QLI A;  2LZU A;  5FXZ A;  3NIN A;  2XJY A;  1WIG A;  5LKU A;  1M3V A;  5FXX A;  1X68 A;  2CUQ A;  2KBX B;  3NIS A;  5FY0 A;  1X3H A;  3ZPO A;  2XUE A;  5FXV A;  4BHW A;  4HI8 B;  1CTL A;  2EHE A;  1NYP A;  3MMK A;  1X61 A;  3NIM A;  5FYM A;  2DFY C;  4JCJ A;  3F6Q B;  4EYU A;  2L4Z A;  2D8Y A;  2CUR A;  2DAR A;  1B8T A;  1WYH A;  1X63 A;  2XJZ A;  3ZLI A;  1A7I A;  2JTN A;  2L6Z C;  1X4L A;  2IYB E;  3NIK A;  3NIH A;  5FY1 A;  5LKX A;  2CU8 A;  1U5S B;  4KFZ A;  2DLO A;  1V6G A;  2O13 A;  5FP3 A;  2O10 A;  2LXD A;  3AVS A;  1J2O A;  2MBV A;  3NIL A;  1G47 A;  1X62 A;  2MIU A;  5A1L A;  2DJ7 A;  4EZ4 A;  2D8Z A;  1X6A A;  2L6Y B;  2EGQ A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...