2XQNT

Complex of the 2nd and 3rd lim domains of tes with the evh1 domain of mena and the n-terminal domain of actin-like protein arp7a
Total Genus 20

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
20
sequence length
125
structure length
125
Chain Sequence
EKPRCAGCDELIFSNEYTQAENQNWHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHAVVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKRMS

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Metal binding protein
source organism Homo sapiens
publication title Molecular recognition of the Tes LIM2-3 domains by the actin-related protein Arp7A.
pubmed doi rcsb
molecule keywords ACTIN-LIKE PROTEIN 7A
total genus 20
structure length 125
sequence length 125
ec nomenclature
pdb deposition date 2010-09-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
T PF00412 LIM LIM domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.110.10 Mainly Beta Ribbon Cysteine Rich Protein Cysteine Rich Protein 2xqnT02
2.10.110.10 Mainly Beta Ribbon Cysteine Rich Protein Cysteine Rich Protein 2xqnT01
2L4ZA 2MBVA 1X6AA 2XJZA 2EHEA 1NYPA 2DLOA 3IXEB 4KFZA 2JTNA 1IMLA 1X3HA 2DFYC 1J2OA 1V6GA 2CO8A 1IBIA 4HI8B 2MIUA 2IYBE 1RUTX 2CUPA 3MMKA 2D8ZA 2EGQA 2YPAC 1B8TA 2LZUA 1X64A 1X61A 2KBXB 2O10A 2CUQA 1QLIA 1X63A 2XQNT 1X68A 4JCJA 1U5SB 1CTLA 2LXDA 1M3VA 1X4LA 2L6ZC 2CU8A 2D8YA 1WYHA 2CORA 2O13A 3F6QB 1X62A 1WIGA 1A7IA 2DJ7A 2XJYA 4HI9B 2L6YB 1CXXA 2D8XA 2CURA 1G47A 2DARA
chains in the Genus database with same CATH superfamily
5FXXA 5FYMA 1NYPA 2DLOA 2DFYC 1J2OA 2MIUA 2CUPA 2YPAC 3MMKA 3NIJA 2EGQA 1B8TA 5FXVA 3AVSA 5LKZA 2D8YA 3F6QB 1X62A 1WIGA 4HI9B 5LKUA 5FP3A 2MBVA 5LKTA 1X6AA 3NIMA 2EHEA 2JTNA 2CO8A 2LZUA 1X61A 4UF0A 2XQNT 1X68A 5A1LA 1U5SB 4EYUA 5FXZA 1X4LA 2L6ZC 2O13A 2CORA 2DJ7A 2D8XA 2L4ZA 2XJZA 3IXEB 1IMLA 3ZLIA 1X3HA 4BHWA 1V6GA 5FY0A 4HI8B 1IBIA 2IYBE 3ZPOA 2D8ZA 1X64A 2CUQA 1QLIA 2XUEA 4ASKA 4JCJA 2LXDA 5FXWA 2XJYA 1CXXA 2CURA 1G47A 2DARA 4EZ4A 3NILA 3NIKA 4KFZA 5LKXA 3AVRA 4UF0B 1RUTX 2KBXB 2O10A 3NIHA 1X63A 5FY7A 1CTLA 1M3VA 5FY1A 2CU8A 3NISA 1WYHA 1A7IA 2L6YB 4EZHA 3NINA
chains in the Genus database with same CATH topology
5FXXA 5FYMA 1NYPA 2DLOA 2DFYC 1J2OA 2MIUA 2CUPA 2YPAC 3MMKA 3NIJA 2EGQA 1B8TA 5FXVA 3AVSA 5LKZA 2D8YA 3F6QB 1X62A 1WIGA 4HI9B 5LKUA 5FP3A 2MBVA 5LKTA 1X6AA 3NIMA 2EHEA 2JTNA 2CO8A 2LZUA 1X61A 4UF0A 2XQNT 1X68A 5A1LA 1U5SB 4EYUA 5FXZA 1X4LA 2L6ZC 2O13A 2CORA 2DJ7A 2D8XA 2L4ZA 2XJZA 3IXEB 1IMLA 3ZLIA 1X3HA 4BHWA 1V6GA 5FY0A 4HI8B 1IBIA 2IYBE 3ZPOA 2D8ZA 1X64A 2CUQA 1QLIA 2XUEA 4ASKA 4JCJA 2LXDA 5FXWA 2XJYA 1CXXA 2CURA 1G47A 2DARA 4EZ4A 3NILA 3NIKA 4KFZA 5LKXA 3AVRA 4UF0B 1RUTX 2KBXB 2O10A 3NIHA 1X63A 5FY7A 1CTLA 1M3VA 5FY1A 2CU8A 3NISA 1WYHA 1A7IA 2L6YB 4EZHA 3NINA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2L4Z A;  2MBV A;  1X6A A;  2XJZ A;  2EHE A;  1NYP A;  2DLO A;  3IXE B;  4KFZ A;  2JTN A;  1IML A;  1X3H A;  2DFY C;  1J2O A;  1V6G A;  2CO8 A;  1IBI A;  4HI8 B;  2MIU A;  2IYB E;  1RUT X;  2CUP A;  3MMK A;  2D8Z A;  2EGQ A;  2YPA C;  1B8T A;  2LZU A;  1X64 A;  1X61 A;  2KBX B;  2O10 A;  2CUQ A;  1QLI A;  1X63 A;  2XQN T;  1X68 A;  4JCJ A;  1U5S B;  1CTL A;  2LXD A;  1M3V A;  1X4L A;  2L6Z C;  2CU8 A;  2D8Y A;  1WYH A;  2COR A;  2O13 A;  3F6Q B;  1X62 A;  1WIG A;  1A7I A;  2DJ7 A;  2XJY A;  4HI9 B;  2L6Y B;  1CXX A;  2D8X A;  2CUR A;  1G47 A;  2DAR A; 
#chains in the Genus database with same CATH topology
 5FXX A;  5FYM A;  1NYP A;  2DLO A;  2DFY C;  1J2O A;  2MIU A;  2CUP A;  2YPA C;  3MMK A;  3NIJ A;  2EGQ A;  1B8T A;  5FXV A;  3AVS A;  5LKZ A;  2D8Y A;  3F6Q B;  1X62 A;  1WIG A;  4HI9 B;  5LKU A;  5FP3 A;  2MBV A;  5LKT A;  1X6A A;  3NIM A;  2EHE A;  2JTN A;  2CO8 A;  2LZU A;  1X61 A;  4UF0 A;  2XQN T;  1X68 A;  5A1L A;  1U5S B;  4EYU A;  5FXZ A;  1X4L A;  2L6Z C;  2O13 A;  2COR A;  2DJ7 A;  2D8X A;  2L4Z A;  2XJZ A;  3IXE B;  1IML A;  3ZLI A;  1X3H A;  4BHW A;  1V6G A;  5FY0 A;  4HI8 B;  1IBI A;  2IYB E;  3ZPO A;  2D8Z A;  1X64 A;  2CUQ A;  1QLI A;  2XUE A;  4ASK A;  4JCJ A;  2LXD A;  5FXW A;  2XJY A;  1CXX A;  2CUR A;  1G47 A;  2DAR A;  4EZ4 A;  3NIL A;  3NIK A;  4KFZ A;  5LKX A;  3AVR A;  4UF0 B;  1RUT X;  2KBX B;  2O10 A;  3NIH A;  1X63 A;  5FY7 A;  1CTL A;  1M3V A;  5FY1 A;  2CU8 A;  3NIS A;  1WYH A;  1A7I A;  2L6Y B;  4EZH A;  3NIN A; 
#chains in the Genus database with same CATH homology
 5FXX A;  5FYM A;  1NYP A;  2DLO A;  2DFY C;  1J2O A;  2MIU A;  2CUP A;  2YPA C;  3MMK A;  3NIJ A;  2EGQ A;  1B8T A;  5FXV A;  3AVS A;  5LKZ A;  2D8Y A;  3F6Q B;  1X62 A;  1WIG A;  4HI9 B;  5LKU A;  5FP3 A;  2MBV A;  5LKT A;  1X6A A;  3NIM A;  2EHE A;  2JTN A;  2CO8 A;  2LZU A;  1X61 A;  4UF0 A;  2XQN T;  1X68 A;  5A1L A;  1U5S B;  4EYU A;  5FXZ A;  1X4L A;  2L6Z C;  2O13 A;  2COR A;  2DJ7 A;  2D8X A;  2L4Z A;  2XJZ A;  3IXE B;  1IML A;  3ZLI A;  1X3H A;  4BHW A;  1V6G A;  5FY0 A;  4HI8 B;  1IBI A;  2IYB E;  3ZPO A;  2D8Z A;  1X64 A;  2CUQ A;  1QLI A;  2XUE A;  4ASK A;  4JCJ A;  2LXD A;  5FXW A;  2XJY A;  1CXX A;  2CUR A;  1G47 A;  2DAR A;  4EZ4 A;  3NIL A;  3NIK A;  4KFZ A;  5LKX A;  3AVR A;  4UF0 B;  1RUT X;  2KBX B;  2O10 A;  3NIH A;  1X63 A;  5FY7 A;  1CTL A;  1M3V A;  5FY1 A;  2CU8 A;  3NIS A;  1WYH A;  1A7I A;  2L6Y B;  4EZH A;  3NIN A; 
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