2XZV | Genus

Total Genus 73

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	73
sequence length	240
structure length	236
Chain Sequence	MDVAGLTDCGLIRKSNQDAFYIDEKHQRFFIVADGMGGEEASRLAVDHIRQYLETHLEDLQHDPVTLLRQAFLAANHAIVEQQRQNSARADMGTTAVVILLDEKGDRAWCAHVGDSRIYRWRKDQLQQITSDHTWIAQAVQLGSLTIEQARQHPWRHVLSQCLGREDLSQIDIQPIDLEPGDRLLLCSAGLTEELTDDVISIYLSEPNVQKAAAALVDAAKTHGGRDNVTVVVISV

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 236 atoms

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236 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Hydrolase
source organism	Synechococcus elongatus
publication title	A Third Metal is Required for Catalytic Activity of the Signal-Transducing Protein Phosphatase M Tppha. pubmed doi rcsb
molecule keywords	PROTEIN SERIN-THREONIN PHOSPHATASE
total genus	73
structure length	236
sequence length	240
ec nomenclature
pdb deposition date	2010-12-01

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF13672	PP2C_2	Protein phosphatase 2C

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.60.40.10	Alpha Beta	4-Layer Sandwich	Phosphatase 2c; domain 1	PPM-type phosphatase domain	2xzvA00

3UJKA 2J82A 4JNDA 4N0GA 4WVOB 2IRMA 3UJLB 3KE6A 3UJGB 2J4OA 3W40A 3NMVB 3FXJA 2JFTA 3W44A 3KDJB 2I44A 2P8EA 2JFRA 3W42A 4LGBB 3ZT9A 2JFSA 4OICB 4DA1A 3JRQA 4YZHA 5ITIA 2J86A 4DS8B 2PK0A 3EQ2A 1A6QA 3ZVUB 1TXOA 3ES2A 3T9QA 3W41A 3D8KA 3FXKA 2V06A 4LGAB 2POMA 3W43A 3FXLA 3RT0A 3QN1B 2PNQA 2I0OA 2CM1A 2XZVA 3NMNB 2ISNA 3RNRA 3F79A 3T91A 5F1MA 4RAFA 3W45A 3N3CA 3NMTB 4LA7B 4RA2A 4YZGA 3MQ3A 5JO2B 2IQ1A 2Y09A 3KB3B 4RAGA 3PU9A 2POPA 3FXOA 4LG5B 5D2UA 5JO1B 3FXMA
chains in the Genus database with same CATH superfamily

3UJKA 2J82A 4JNDA 4N0GA 4WVOB 2IRMA 3UJLB 3KE6A 3UJGB 2J4OA 3W40A 3NMVB 3FXJA 2JFTA 3W44A 3KDJB 2I44A 2P8EA 2JFRA 3W42A 4LGBB 3ZT9A 2JFSA 4OICB 4DA1A 3JRQA 4YZHA 5ITIA 2J86A 4DS8B 2PK0A 3EQ2A 1A6QA 3ZVUB 1TXOA 3ES2A 3T9QA 3W41A 3D8KA 3FXKA 2V06A 4LGAB 2POMA 3W43A 3FXLA 3RT0A 3QN1B 2PNQA 2I0OA 2CM1A 2XZVA 3NMNB 2ISNA 3RNRA 3F79A 3T91A 5F1MA 4RAFA 3W45A 4IIPA 3N3CA 3NMTB 4IIKA 4LA7B 4RA2A 4YZGA 3MQ3A 5JO2B 2IQ1A 2Y09A 3KB3B 4RAGA 3PU9A 2POPA 3FXOA 4LG5B 5D2UA 5JO1B 3FXMA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3UJK A;  2J82 A;  4JND A;  4N0G A;  4WVO B;  2IRM A;  3UJL B;  3KE6 A;  3UJG B;  2J4O A;  3W40 A;  3NMV B;  3FXJ A;  2JFT A;  3W44 A;  3KDJ B;  2I44 A;  2P8E A;  2JFR A;  3W42 A;  4LGB B;  3ZT9 A;  2JFS A;  4OIC B;  4DA1 A;  3JRQ A;  4YZH A;  5ITI A;  2J86 A;  4DS8 B;  2PK0 A;  3EQ2 A;  1A6Q A;  3ZVU B;  1TXO A;  3ES2 A;  3T9Q A;  3W41 A;  3D8K A;  3FXK A;  2V06 A;  4LGA B;  2POM A;  3W43 A;  3FXL A;  3RT0 A;  3QN1 B;  2PNQ A;  2I0O A;  2CM1 A;  2XZV A;  3NMN B;  2ISN A;  3RNR A;  3F79 A;  3T91 A;  5F1M A;  4RAF A;  3W45 A;  3N3C A;  3NMT B;  4LA7 B;  4RA2 A;  4YZG A;  3MQ3 A;  5JO2 B;  2IQ1 A;  2Y09 A;  3KB3 B;  4RAG A;  3PU9 A;  2POP A;  3FXO A;  4LG5 B;  5D2U A;  5JO1 B;  3FXM A; 
#chains in the Genus database with same CATH topology
 3UJK A;  2J82 A;  4JND A;  4N0G A;  4WVO B;  2IRM A;  3UJL B;  3KE6 A;  3UJG B;  2J4O A;  3W40 A;  3NMV B;  3FXJ A;  2JFT A;  3W44 A;  3KDJ B;  2I44 A;  2P8E A;  2JFR A;  3W42 A;  4LGB B;  3ZT9 A;  2JFS A;  4OIC B;  4DA1 A;  3JRQ A;  4YZH A;  5ITI A;  2J86 A;  4DS8 B;  2PK0 A;  3EQ2 A;  1A6Q A;  3ZVU B;  1TXO A;  3ES2 A;  3T9Q A;  3W41 A;  3D8K A;  3FXK A;  2V06 A;  4LGA B;  2POM A;  3W43 A;  3FXL A;  3RT0 A;  3QN1 B;  2PNQ A;  2I0O A;  2CM1 A;  2XZV A;  3NMN B;  2ISN A;  3RNR A;  3F79 A;  3T91 A;  5F1M A;  4RAF A;  3W45 A;  4IIP A;  3N3C A;  3NMT B;  4IIK A;  4LA7 B;  4RA2 A;  4YZG A;  3MQ3 A;  5JO2 B;  2IQ1 A;  2Y09 A;  3KB3 B;  4RAG A;  3PU9 A;  2POP A;  3FXO A;  4LG5 B;  5D2U A;  5JO1 B;  3FXM A; 
#chains in the Genus database with same CATH homology
 3UJK A;  2J82 A;  4JND A;  4N0G A;  4WVO B;  2IRM A;  3UJL B;  3KE6 A;  3UJG B;  2J4O A;  3W40 A;  3NMV B;  3FXJ A;  2JFT A;  3W44 A;  3KDJ B;  2I44 A;  2P8E A;  2JFR A;  3W42 A;  4LGB B;  3ZT9 A;  2JFS A;  4OIC B;  4DA1 A;  3JRQ A;  4YZH A;  5ITI A;  2J86 A;  4DS8 B;  2PK0 A;  3EQ2 A;  1A6Q A;  3ZVU B;  1TXO A;  3ES2 A;  3T9Q A;  3W41 A;  3D8K A;  3FXK A;  2V06 A;  4LGA B;  2POM A;  3W43 A;  3FXL A;  3RT0 A;  3QN1 B;  2PNQ A;  2I0O A;  2CM1 A;  2XZV A;  3NMN B;  2ISN A;  3RNR A;  3F79 A;  3T91 A;  5F1M A;  4RAF A;  3W45 A;  3N3C A;  3NMT B;  4LA7 B;  4RA2 A;  4YZG A;  3MQ3 A;  5JO2 B;  2IQ1 A;  2Y09 A;  3KB3 B;  4RAG A;  3PU9 A;  2POP A;  3FXO A;  4LG5 B;  5D2U A;  5JO1 B;  3FXM A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2XZVA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations