2Y09 | Genus

Total Genus 77

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	77
sequence length	240
structure length	236
Chain Sequence	MDVAGLTDCGLIRKSNQDAFYIDEKHQRFFIVADGMGGHAGGEEASRLAVDHIRQYLETHLEDLQHDPVTLLRQAFLAANHAIVEQQRQNSARADMGTTAVVILLDEKGDRAWCAHVGASRIYRWRKDQLQQITSDHTWIAQAVQLGSLARQHPWRHVLSQCLGREDLSQIDIQPIDLEPGDRLLLCSDGLTEELTDDVISIYLSEPNVQKAAAALVDAAKTHGGRDNVTVVVISV

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Hydrolase
source organism	Synechococcus elongatus
publication title	A Third Metal is Required for Catalytic Activity of the Signal-Transducing Protein Phosphatase M Tppha. pubmed doi rcsb
molecule keywords	PROTEIN SERIN-THREONIN PHOSPHATASE
total genus	77
structure length	236
sequence length	240
ec nomenclature
pdb deposition date	2010-12-01

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF13672	PP2C_2	Protein phosphatase 2C

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.60.40.10	Alpha Beta	4-Layer Sandwich	Phosphatase 2c; domain 1	PPM-type phosphatase domain	2y09A00

3EQ2A 5JO1B 4RAGA 3JRQA 3W41A 4YZGA 2CM1A 4LGAB 4RAFA 4YZHA 2J86A 5JO2B 3QN1B 3NMTB 5F1MA 2ISNA 3UJLB 3FXLA 3NMVB 3W42A 4N0GA 3UJGB 4LG5B 2I44A 3W43A 2PNQA 5ITIA 3MQ3A 3T9QA 3RT0A 1A6QA 3ZT9A 1TXOA 3W44A 2JFSA 3NMNB 2IQ1A 2I0OA 3T91A 2PK0A 4LA7B 2J82A 2JFTA 4OICB 2IRMA 4WVOB 5D2UA 3FXKA 4JNDA 3RNRA 4DA1A 3KE6A 3N3CA 3KDJB 3FXOA 3FXMA 3W45A 4DS8B 3FXJA 2POPA 3ZVUB 2J4OA 4LGBB 4RA2A 2XZVA 3W40A 3F79A 2V06A 2P8EA 3D8KA 3ES2A 3UJKA 3PU9A 2Y09A 2POMA 3KB3B 2JFRA
chains in the Genus database with same CATH superfamily

3EQ2A 5JO1B 4RAGA 3JRQA 3W41A 4YZGA 2CM1A 4LGAB 4RAFA 4YZHA 2J86A 5JO2B 3QN1B 3NMTB 5F1MA 2ISNA 3UJLB 3FXLA 3NMVB 3W42A 4N0GA 3UJGB 4LG5B 2I44A 3W43A 2PNQA 5ITIA 3MQ3A 3T9QA 3RT0A 1A6QA 3ZT9A 1TXOA 3W44A 2JFSA 3NMNB 2IQ1A 2I0OA 3T91A 2PK0A 4LA7B 4IIPA 2J82A 2JFTA 4OICB 2IRMA 4WVOB 5D2UA 3FXKA 4JNDA 4IIKA 3RNRA 4DA1A 3KE6A 3N3CA 3KDJB 3FXOA 3FXMA 3W45A 4DS8B 3FXJA 2POPA 3ZVUB 2J4OA 4LGBB 4RA2A 2XZVA 3W40A 3F79A 2V06A 2P8EA 3D8KA 3ES2A 3UJKA 3PU9A 2Y09A 2POMA 3KB3B 2JFRA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3EQ2 A;  5JO1 B;  4RAG A;  3JRQ A;  3W41 A;  4YZG A;  2CM1 A;  4LGA B;  4RAF A;  4YZH A;  2J86 A;  5JO2 B;  3QN1 B;  3NMT B;  5F1M A;  2ISN A;  3UJL B;  3FXL A;  3NMV B;  3W42 A;  4N0G A;  3UJG B;  4LG5 B;  2I44 A;  3W43 A;  2PNQ A;  5ITI A;  3MQ3 A;  3T9Q A;  3RT0 A;  1A6Q A;  3ZT9 A;  1TXO A;  3W44 A;  2JFS A;  3NMN B;  2IQ1 A;  2I0O A;  3T91 A;  2PK0 A;  4LA7 B;  2J82 A;  2JFT A;  4OIC B;  2IRM A;  4WVO B;  5D2U A;  3FXK A;  4JND A;  3RNR A;  4DA1 A;  3KE6 A;  3N3C A;  3KDJ B;  3FXO A;  3FXM A;  3W45 A;  4DS8 B;  3FXJ A;  2POP A;  3ZVU B;  2J4O A;  4LGB B;  4RA2 A;  2XZV A;  3W40 A;  3F79 A;  2V06 A;  2P8E A;  3D8K A;  3ES2 A;  3UJK A;  3PU9 A;  2Y09 A;  2POM A;  3KB3 B;  2JFR A; 
#chains in the Genus database with same CATH topology
 3EQ2 A;  5JO1 B;  4RAG A;  3JRQ A;  3W41 A;  4YZG A;  2CM1 A;  4LGA B;  4RAF A;  4YZH A;  2J86 A;  5JO2 B;  3QN1 B;  3NMT B;  5F1M A;  2ISN A;  3UJL B;  3FXL A;  3NMV B;  3W42 A;  4N0G A;  3UJG B;  4LG5 B;  2I44 A;  3W43 A;  2PNQ A;  5ITI A;  3MQ3 A;  3T9Q A;  3RT0 A;  1A6Q A;  3ZT9 A;  1TXO A;  3W44 A;  2JFS A;  3NMN B;  2IQ1 A;  2I0O A;  3T91 A;  2PK0 A;  4LA7 B;  4IIP A;  2J82 A;  2JFT A;  4OIC B;  2IRM A;  4WVO B;  5D2U A;  3FXK A;  4JND A;  4IIK A;  3RNR A;  4DA1 A;  3KE6 A;  3N3C A;  3KDJ B;  3FXO A;  3FXM A;  3W45 A;  4DS8 B;  3FXJ A;  2POP A;  3ZVU B;  2J4O A;  4LGB B;  4RA2 A;  2XZV A;  3W40 A;  3F79 A;  2V06 A;  2P8E A;  3D8K A;  3ES2 A;  3UJK A;  3PU9 A;  2Y09 A;  2POM A;  3KB3 B;  2JFR A; 
#chains in the Genus database with same CATH homology
 3EQ2 A;  5JO1 B;  4RAG A;  3JRQ A;  3W41 A;  4YZG A;  2CM1 A;  4LGA B;  4RAF A;  4YZH A;  2J86 A;  5JO2 B;  3QN1 B;  3NMT B;  5F1M A;  2ISN A;  3UJL B;  3FXL A;  3NMV B;  3W42 A;  4N0G A;  3UJG B;  4LG5 B;  2I44 A;  3W43 A;  2PNQ A;  5ITI A;  3MQ3 A;  3T9Q A;  3RT0 A;  1A6Q A;  3ZT9 A;  1TXO A;  3W44 A;  2JFS A;  3NMN B;  2IQ1 A;  2I0O A;  3T91 A;  2PK0 A;  4LA7 B;  2J82 A;  2JFT A;  4OIC B;  2IRM A;  4WVO B;  5D2U A;  3FXK A;  4JND A;  3RNR A;  4DA1 A;  3KE6 A;  3N3C A;  3KDJ B;  3FXO A;  3FXM A;  3W45 A;  4DS8 B;  3FXJ A;  2POP A;  3ZVU B;  2J4O A;  4LGB B;  4RA2 A;  2XZV A;  3W40 A;  3F79 A;  2V06 A;  2P8E A;  3D8K A;  3ES2 A;  3UJK A;  3PU9 A;  2Y09 A;  2POM A;  3KB3 B;  2JFR A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2Y09A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations