The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
18
|
sequence length |
94
|
structure length |
94
|
Chain Sequence |
MPDPLMYQQDNFVVLETNQPEQFLTTIELLEKLKGELEKISFSDLPLELQKLDSLPAQAQHLIDTSCELDVGAGKYLQWYAVRLEKLEHHHHHH
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Solution NMR structure of Asl3597 from Nostoc sp. PCC7120, the first structure from protein domain family PF12095, reveals a novel fold.
pubmed doi rcsb |
| molecule tags |
Structural genomics, unknown function
|
| source organism |
Nostoc sp.
|
| molecule keywords |
Asl3597 protein
|
| total genus |
18
|
| structure length |
94
|
| sequence length |
94
|
| ec nomenclature | |
| pdb deposition date | 2009-12-22 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF12095 | CRR7 | Protein CHLORORESPIRATORY REDUCTION 7 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | Alpha-Beta Complex | Eukaryotic RPB6 RNA polymerase subunit | Eukaryotic RPB6 RNA polymerase subunit |
#chains in the Genus database with same CATH superfamily 2KRX A; #chains in the Genus database with same CATH topology 3WOD E; 5M3F F; 1I50 F; 3GTL F; 2E2J E; 1TWG F; 3DXJ E; 3I4N E; 4BXX E; 4X6A E; 4A3E F; 5M5Y F; 1TWA F; 4YFK E; 4A3F F; 1K83 E; 2CW0 E; 2JA7 E; 4A3C F; 2JA8 E; 3S14 E; 3S15 E; 3PO2 F; 3S17 E; 3HOX E; 4BY1 F; 1Y1V F; 5TMC E; 5TMF E; 4C3J F; 4A3B E; 2O5J E; 3HKZ H; 3M3Y F; 4XLN E; 5D4C E; 3FKI F; 4A3I E; 2NVT F; 2Y0S H; 5IPL E; 5IYD E; 5M5X F; 3GTM F; 2NVY F; 3HOZ F; 4OIQ E; 3S2H E; 4A3L F; 4GZY E; 2E2I E; 4G7O E; 4LJZ E; 4YG2 E; 2R92 F; 3M4O E; 2E2H F; 2JA5 F; 1Y1W F; 4LK0 E; 3S1R F; 1TWF F; 5FJ8 F; 4C2M F; 5M3M E; 3HOU F; 5C4J E; 5IYC E; 3GTG E; 3H0G E; 2YU9 F; 4Y7N E; 4A3M E; 4C3H F; 3S2D E; 4A3G F; 3HOY F; 4A3J F; 5FLM E; 1SFO E; 2PMZ H; 2E2J F; 2R7Z E; 3I4N F; 5BYH E; 4BXX F; 4X6A F; 4BBR E; 4A3D F; 2JA7 F; 3H3V F; 4YFN E; 2JA8 F; 3S14 F; 3GTO E; 3GTK E; 1TWH E; 3HKZ K; 3S1N E; 1I6H E; 2WB1 H; 3GTP E; 1WCM F; 3GTJ E; 5C44 E; 1ZYR E; 4G7Z E; 4A3G E; 4A3I F; 3RZO E; 5M5W E; 5IYD F; 2JA6 E; 1TWC F; 4OIR E; 4JK1 E; 4A93 F; 2A68 E; 4C3H E; 5C3E E; 2B63 E; 1I3Q E; 1EIK A; 4BBS E; 3HOV F; 1QKL A; 3S1M E; 3CQZ E; 1I6V E; 1R9T E; 1SMY E; 5IYC F; 2VUM E; 3GTG F; 2O5I E; 4Y7N F; 1YNN K; 4A3M F; 3RZD F; 2PMZ K; 5IP7 F; 3S1Q E; 3S2D F; 3HOW E; 5E17 E; 5IP9 E; 5FLM F; 4Y52 E; 2R7Z F; 3PO3 E; 4BBR F; 4C3I E; 1TWA E; 4A3F E; 4XSX E; 4G7H E; 4XSZ E; 2BE5 E; 1K83 F; 3GTO F; 4A3K E; 2PPB E; 1IW7 E; 1I6H F; 3GTQ E; 1Y1V E; 3S15 F; 3S17 F; 4C3J E; 5D4E E; 3GTJ F; 5C44 F; 3HOX F; 4LLG E; 5IYB E; 3M3Y E; 3I4M E; 4A3B F; 5C4X E; 5M5W F; 3K7A F; 4XLP E; 2JA6 F; 3GTM E; 4KN4 E; 2NVX E; 4Q5S E; 3S2H F; 2A6E E; 2A6H E; 5C3E F; 2E2I F; 2E2H E; 2B63 F; 2NVQ E; 3M4O F; 1I3Q F; 1TWF E; 3S1R E; 4QIW K; 4OIP E; 4KN7 E; 3S16 E; 3HOU E; 4KMU E; 4YFX E; 5M3M F; 2WB1 I; 2YU9 E; 5C4J F; 4QIW H; 3H0G F; 3HOW F; 2KRX A; 4MQ9 E; 4Y52 F; 4A3J E; 4BY7 E; 3K7A E; 2R93 F; 3PO3 F; 5M3F E; 1I50 E; 2Y0S I; 1SFO F; 4C3I F; 1TWG E; 3GTL E; 4A3D E; 2WAQ H; 1DZF A; 4AYB K; 4A3E E; 4Q4Z E; 5M5Y E; 4A3K F; 3GTQ F; 4A3C E; 3HOY E; 3PO2 E; 3GTK F; 1TWH F; 3S1N F; 1WCM E; 4AYB H; 4BY1 E; 5IYB F; 3I4M F; 2A69 E; 1YNJ K; 5C4X F; 3FKI E; 3RZO F; 1TWC E; 2NVT E; 2NVX F; 2R93 E; 5M5X E; 3HOZ E; 2NVY E; 4A93 E; 4MEY E; 4A3L E; 2NVQ F; 2R92 E; 2JA5 E; 4MEX E; 1Y1W E; 3HOV E; 1HQM E; 5FJ8 E; 3S16 F; 4BBS F; 3EQL E; 5D4D E; 4OIO E; 4C2M E; 3CQZ F; 3S1M F; 3H3V G; 4OIN E; 3RZD E; 1R9T F; 2VUM F; 3GTP F; 5IP7 E; 5E18 E; 3S1Q F; 4BY7 F; 4ZH4 E; 4LK1 E; 2WAQ K; 5IP9 F; #chains in the Genus database with same CATH homology 3WOD E; 5M3F F; 1I50 F; 3GTL F; 1TWG F; 3DXJ E; 4A3E F; 5M5Y F; 1TWA F; 4YFK E; 4A3F F; 2CW0 E; 4A3C F; 3PO2 F; 4BY1 F; 1Y1V F; 5TMC E; 5TMF E; 4C3J F; 2O5J E; 3M3Y F; 4XLN E; 5D4C E; 3FKI F; 2NVT F; 5IPL E; 5M5X F; 3GTM F; 2NVY F; 3HOZ F; 4OIQ E; 4A3L F; 4GZY E; 4G7O E; 4LJZ E; 4YG2 E; 2R92 F; 2E2H F; 2JA5 F; 1Y1W F; 4LK0 E; 3S1R F; 1TWF F; 5FJ8 F; 4C2M F; 3HOU F; 2YU9 F; 4C3H F; 4A3G F; 3HOY F; 4A3J F; 2E2J F; 4BXX F; 3I4N F; 5BYH E; 4X6A F; 4A3D F; 2JA7 F; 4YFN E; 2JA8 F; 3S14 F; 3HKZ K; 1WCM F; 1ZYR E; 4G7Z E; 4A3I F; 5IYD F; 1TWC F; 4OIR E; 4JK1 E; 4A93 F; 2A68 E; 3HOV F; 1QKL A; 1I6V E; 2R93 F; 1SMY E; 5IYC F; 3GTG F; 2O5I E; 4Y7N F; 1YNN K; 4A3M F; 3RZD F; 2PMZ K; 5IP7 F; 3S2D F; 5E17 E; 5FLM F; 2R7Z F; 4BBR F; 4XSX E; 4G7H E; 4XSZ E; 2BE5 E; 1K83 F; 3GTO F; 2PPB E; 1IW7 E; 1I6H F; 3S15 F; 3S17 F; 5D4E E; 3GTJ F; 5C44 F; 3HOX F; 4LLG E; 4A3B F; 5M5W F; 3K7A F; 4XLP E; 2JA6 F; 4KN4 E; 4Q5S E; 3S2H F; 2A6E E; 2A6H E; 5C3E F; 2E2I F; 2B63 F; 3M4O F; 1I3Q F; 4QIW K; 4OIP E; 4KN7 E; 4KMU E; 4YFX E; 5M3M F; 2WB1 I; 5C4J F; 3H0G F; 3HOW F; 2KRX A; 4MQ9 E; 4Y52 F; 3PO3 F; 1SFO F; 2Y0S I; 4C3I F; 4AYB K; 4Q4Z E; 4A3K F; 3GTQ F; 3GTK F; 1TWH F; 3S1N F; 5IYB F; 3I4M F; 2A69 E; 1YNJ K; 5C4X F; 3RZO F; 2NVX F; 4MEY E; 2NVQ F; 4MEX E; 1HQM E; 3S16 F; 4BBS F; 3EQL E; 5D4D E; 4OIO E; 3S1M F; 3CQZ F; 3H3V G; 4OIN E; 1R9T F; 2VUM F; 3GTP F; 5E18 E; 3S1Q F; 4BY7 F; 4ZH4 E; 4LK1 E; 2WAQ K; 5IP9 F;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
