2Y0SI

Crystal structure of sulfolobus shibatae rna polymerase in p21 space group
Total Genus 13
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
13
sequence length
82
structure length
82
Chain Sequence
QDLHFNEVFVSLWQNKLTRYEIARVISARALQLAMGAPALIDINNISSTDVISIAEEEFKRGVLPITIRRRLPNGKIILLSL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Archaeal RNA polymerase: the influence of the protruding stalk in crystal packing and preliminary biophysical analysis of the Rpo13 subunit.
pubmed doi rcsb
molecule tags Transferase
molecule keywords DNA-DIRECTED RNA POLYMERASE
total genus 13
structure length 82
sequence length 82
chains with identical sequence K
ec nomenclature ec 2.7.7.6: DNA-directed RNA polymerase.
pdb deposition date 2010-12-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
I PF01192 RNA_pol_Rpb6 RNA polymerase Rpb6
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.940.10 Alpha Beta Alpha-Beta Complex Eukaryotic RPB6 RNA polymerase subunit Eukaryotic RPB6 RNA polymerase subunit 2y0sI00
3RZDF 5IYDF 4A3KF 4BBSF 4A3DF 5E17E 5FJ8F 3GTGF 4OIQE 4X6AF 4BY1F 4A3EF 2JA6F 5IPLE 2JA7F 5TMFE 1SMYE 4XLPE 5D4EE 1TWHF 4A3BF 1IW7E 4MQ9E 3S1MF 4KMUE 1SFOF 3HOWF 2NVXF 3GTPF 4YFNE 4Q4ZE 2YU9F 4MEYE 5C4JF 3HOVF 3S16F 4AYBK 4LK0E 5M3FF 1I6VE 3EQLE 4Y7NF 4C3IF 1WCMF 4MEXE 3GTLF 4KN7E 5FLMF 4C2MF 1ZYRE 1I3QF 3I4MF 4A3IF 4A3GF 4BY7F 4JK1E 2O5IE 4YG2E 2WAQK 2CW0E 3DXJE 3H0GF 4OIOE 3GTKF 5C3EF 2R93F 4XSZE 4C3JF 1HQME 2NVYF 5D4CE 4G7ZE 4OIRE 4KN4E 2NVTF 5IYBF 3H3VG 4GZYE 5E18E 2JA8F 3PO3F 3HOYF 4XLNE 3GTJF 4XSXE 2O5JE 3S1NF 4YFXE 4LK1E 1R9TF 2NVQF 5IP7F 3S15F 3CQZF 5M3MF 4LLGE 4YFKE 2VUMF 3GTQF 5M5YF 1I6HF 4A3MF 2A68E 2JA5F 5M5WF 4A3JF 2R92F 2A6HE 3GTOF 3S2HF 4C3HF 3HOZF 5C4XF 5IP9F 3M3YF 4LJZE 3HOUF 5M5XF 1Y1VF 4OIPE 4G7OE 3S2DF 3S1RF 1TWCF 1TWGF 2BE5E 2B63F 3PO2F 2A69E 3HKZK 1YNJK 2WB1I 3RZOF 4G7HE 4A3CF 1K83F 4BBRF 1I50F 4BXXF 2E2IF 3WODE 2E2JF 2PMZK 3GTMF 4Q5SE 4Y52F 2PPBE 5D4DE 1Y1WF 4A3FF 3S17F 2A6EE 3HOXF 3S14F 4A93F 5IYCF 1QKLA 1YNNK 3FKIF 2Y0SI 4ZH4E 4OINE 3S1QF 3K7AF 5TMCE 2E2HF 3M4OF 3I4NF 2R7ZF 1TWAF 4A3LF 5BYHE 1TWFF 5C44F
chains in the Genus database with same CATH superfamily
3RZDF 5IYDF 3PO2E 4A3KF 4A3DE 4BBSF 4A3DF 3RZOE 4A3CE 5E17E 4BBRE 5FJ8F 3GTGF 1I50E 4OIQE 4BXXE 4X6AF 4BY1F 2E2IE 3GTME 4A3EF 2E2JE 3H3VF 2JA6F 4Y52E 3HKZH 2JA7F 5IPLE 5TMFE 1SMYE 4XLPE 4A3FE 1TWHE 5D4EE 1TWHF 3HOXE 3S14E 4A3BF 1IW7E 4MQ9E 5IYCE 4A93E 3S1MF 4KMUE 1SFOF 2PMZH 3HOWF 2NVXF 3GTPF 3FKIE 4YFNE 4Q4ZE 3S1QE 2YU9F 3K7AE 4MEYE 5C4JF 3HOVF 4AYBK 3S16F 2E2HE 3M4OE 4LK0E 2R7ZE 3I4NE 1TWAE 4A3LE 5M3FF 1I6VE 3EQLE 4Y7NF 4QIWH 1TWFE 5C44E 4C3IF 1WCMF 3RZDE 5IYDE 4MEXE 3GTLF 4A3KE 4KN7E 4BBSE 5FLMF 4C2MF 1ZYRE 1I3QF 3I4ME 3I4MF 4A3IF 5FJ8E 3GTGE 4A3GF 4X6AE 4BY7F 4BY1E 4JK1E 2O5IE 4YG2E 4A3EE 2WAQK 1TWGE 2JA6E 2CW0E 2JA7E 3DXJE 3H0GF 4OIOE 3GTKE 3GTKF 5C3EF 2R93F 4A3BE 4XSZE 4C3JE 3S1ME 4C3JF 1SFOE 3HOWE 2NVXE 1HQME 2NVYF 5D4CE 4G7ZE 4OIRE 4KN4E 2NVTF 5IYBF 2YU9E 3H3VG 3HOVE 5E18E 5C4JE 3S16E 2JA8F 3PO3F 3HOYF 4XLNE 3GTJF 5M3FE 4XSXE 2O5JE 3S1NE 3S1NF 4LK1E 4YFXE 4Y7NE 1R9TF 2NVQF 5IP7F 3S15F 5M3ME 4AYBH 3CQZF 5M3MF 4C3IE 3GTPE 1WCME 4LLGE 4YFKE 2VUME 2VUMF 3GTLE 5FLME 4C2ME 3GTQF 5M5YE 5M5YF 1I3QE 1I6HE 4A3IE 1I6HF 4A3GE 4BY7E 4A3MF 2A68E 2JA5F 5M5WF 4A3JF 2R92F 3GTOE 2KRXA 2A6HE 3H0GE 3GTOF 4C3HE 5C3EE 4C3HF 3S2HF 2R93E 3HOZF 5C4XF 5IP9F 3M3YF 2WAQH 2NVYE 4LJZE 2NVTE 5IYBE 3HOUF 5M5XF 1Y1VF 4GZYE 2JA8E 4OIPE 3HOYE 3PO3E 3S2DE 3S2DF 4G7OE 3S1RF 3GTJE 1TWCF 1TWGF 2BE5E 2B63F 1EIKA 1R9TE 2NVQE 3PO2F 5IP7E 3S15E 2A69E 3CQZE 3HKZK 1YNJK 2WB1I 3RZOF 4G7HE 1K83E 4A3CF 1K83F 4BBRF 1I50F 4BXXF 3GTQE 2E2IF 3WODE 2E2JF 2PMZK 2WB1H 3GTMF 4Q5SE 4Y52F 1DZFA 2PPBE 1Y1WE 5D4DE 4A3ME 4A3FF 1Y1WF 3S17F 3S17E 2A6EE 3HOXF 3S14F 2JA5E 4A93F 5M5WE 5IYCF 1QKLA 4A3JE 2R92E 1YNNK 3FKIF 2Y0SI 4ZH4E 4OINE 3S2HE 4QIWK 3HOZE 3S1QF 3K7AF 5C4XE 5TMCE 5IP9E 3M3YE 2E2HF 3M4OF 3I4NF 2R7ZF 1TWAF 4A3LF 2Y0SH 3HOUE 5M5XE 5BYHE 1Y1VE 1TWFF 3S1RE 5C44F 1TWCE 2B63E
chains in the Genus database with same CATH topology
3RZDF 5IYDF 4A3KF 4BBSF 4A3DF 5E17E 5FJ8F 3GTGF 4OIQE 4X6AF 4BY1F 4A3EF 2JA6F 5IPLE 2JA7F 5TMFE 1SMYE 4XLPE 5D4EE 1TWHF 4A3BF 1IW7E 4MQ9E 3S1MF 4KMUE 1SFOF 3HOWF 2NVXF 3GTPF 4YFNE 4Q4ZE 2YU9F 4MEYE 5C4JF 3HOVF 3S16F 4AYBK 4LK0E 5M3FF 1I6VE 3EQLE 4Y7NF 4C3IF 1WCMF 4MEXE 3GTLF 4KN7E 5FLMF 4C2MF 1ZYRE 1I3QF 3I4MF 4A3IF 4A3GF 4BY7F 4JK1E 2O5IE 4YG2E 2WAQK 2CW0E 3DXJE 3H0GF 4OIOE 3GTKF 5C3EF 2R93F 4XSZE 4C3JF 1HQME 2NVYF 5D4CE 4G7ZE 4OIRE 4KN4E 2NVTF 5IYBF 3H3VG 4GZYE 5E18E 2JA8F 3PO3F 3HOYF 4XLNE 3GTJF 4XSXE 2O5JE 3S1NF 4YFXE 4LK1E 1R9TF 2NVQF 5IP7F 3S15F 3CQZF 5M3MF 4LLGE 4YFKE 2VUMF 3GTQF 5M5YF 1I6HF 4A3MF 2A68E 2JA5F 5M5WF 4A3JF 2R92F 2KRXA 2A6HE 3GTOF 3S2HF 4C3HF 3HOZF 5C4XF 5IP9F 3M3YF 4LJZE 3HOUF 5M5XF 1Y1VF 4OIPE 4G7OE 3S2DF 3S1RF 1TWCF 1TWGF 2BE5E 2B63F 3PO2F 2A69E 3HKZK 1YNJK 2WB1I 3RZOF 4G7HE 4A3CF 1K83F 4BBRF 1I50F 4BXXF 2E2IF 3WODE 2E2JF 2PMZK 3GTMF 4Q5SE 4Y52F 2PPBE 5D4DE 1Y1WF 4A3FF 3S17F 2A6EE 3HOXF 3S14F 4A93F 5IYCF 1QKLA 1YNNK 3FKIF 2Y0SI 4ZH4E 4OINE 3S1QF 4QIWK 3K7AF 5TMCE 2E2HF 3M4OF 3I4NF 2R7ZF 1TWAF 4A3LF 5BYHE 1TWFF 5C44F
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3RZD F;  5IYD F;  4A3K F;  4BBS F;  4A3D F;  5E17 E;  5FJ8 F;  3GTG F;  4OIQ E;  4X6A F;  4BY1 F;  4A3E F;  2JA6 F;  5IPL E;  2JA7 F;  5TMF E;  1SMY E;  4XLP E;  5D4E E;  1TWH F;  4A3B F;  1IW7 E;  4MQ9 E;  3S1M F;  4KMU E;  1SFO F;  3HOW F;  2NVX F;  3GTP F;  4YFN E;  4Q4Z E;  2YU9 F;  4MEY E;  5C4J F;  3HOV F;  3S16 F;  4AYB K;  4LK0 E;  5M3F F;  1I6V E;  3EQL E;  4Y7N F;  4C3I F;  1WCM F;  4MEX E;  3GTL F;  4KN7 E;  5FLM F;  4C2M F;  1ZYR E;  1I3Q F;  3I4M F;  4A3I F;  4A3G F;  4BY7 F;  4JK1 E;  2O5I E;  4YG2 E;  2WAQ K;  2CW0 E;  3DXJ E;  3H0G F;  4OIO E;  3GTK F;  5C3E F;  2R93 F;  4XSZ E;  4C3J F;  1HQM E;  2NVY F;  5D4C E;  4G7Z E;  4OIR E;  4KN4 E;  2NVT F;  5IYB F;  3H3V G;  4GZY E;  5E18 E;  2JA8 F;  3PO3 F;  3HOY F;  4XLN E;  3GTJ F;  4XSX E;  2O5J E;  3S1N F;  4YFX E;  4LK1 E;  1R9T F;  2NVQ F;  5IP7 F;  3S15 F;  3CQZ F;  5M3M F;  4LLG E;  4YFK E;  2VUM F;  3GTQ F;  5M5Y F;  1I6H F;  4A3M F;  2A68 E;  2JA5 F;  5M5W F;  4A3J F;  2R92 F;  2A6H E;  3GTO F;  3S2H F;  4C3H F;  3HOZ F;  5C4X F;  5IP9 F;  3M3Y F;  4LJZ E;  3HOU F;  5M5X F;  1Y1V F;  4OIP E;  4G7O E;  3S2D F;  3S1R F;  1TWC F;  1TWG F;  2BE5 E;  2B63 F;  3PO2 F;  2A69 E;  3HKZ K;  1YNJ K;  2WB1 I;  3RZO F;  4G7H E;  4A3C F;  1K83 F;  4BBR F;  1I50 F;  4BXX F;  2E2I F;  3WOD E;  2E2J F;  2PMZ K;  3GTM F;  4Q5S E;  4Y52 F;  2PPB E;  5D4D E;  1Y1W F;  4A3F F;  3S17 F;  2A6E E;  3HOX F;  3S14 F;  4A93 F;  5IYC F;  1QKL A;  1YNN K;  3FKI F;  2Y0S I;  4ZH4 E;  4OIN E;  3S1Q F;  3K7A F;  5TMC E;  2E2H F;  3M4O F;  3I4N F;  2R7Z F;  1TWA F;  4A3L F;  5BYH E;  1TWF F;  5C44 F; 
#chains in the Genus database with same CATH topology
 3RZD F;  5IYD F;  3PO2 E;  4A3K F;  4A3D E;  4BBS F;  4A3D F;  3RZO E;  4A3C E;  5E17 E;  4BBR E;  5FJ8 F;  3GTG F;  1I50 E;  4OIQ E;  4BXX E;  4X6A F;  4BY1 F;  2E2I E;  3GTM E;  4A3E F;  2E2J E;  3H3V F;  2JA6 F;  4Y52 E;  3HKZ H;  2JA7 F;  5IPL E;  5TMF E;  1SMY E;  4XLP E;  4A3F E;  1TWH E;  5D4E E;  1TWH F;  3HOX E;  3S14 E;  4A3B F;  1IW7 E;  4MQ9 E;  5IYC E;  4A93 E;  3S1M F;  4KMU E;  1SFO F;  2PMZ H;  3HOW F;  2NVX F;  3GTP F;  3FKI E;  4YFN E;  4Q4Z E;  3S1Q E;  2YU9 F;  3K7A E;  4MEY E;  5C4J F;  3HOV F;  4AYB K;  3S16 F;  2E2H E;  3M4O E;  4LK0 E;  2R7Z E;  3I4N E;  1TWA E;  4A3L E;  5M3F F;  1I6V E;  3EQL E;  4Y7N F;  4QIW H;  1TWF E;  5C44 E;  4C3I F;  1WCM F;  3RZD E;  5IYD E;  4MEX E;  3GTL F;  4A3K E;  4KN7 E;  4BBS E;  5FLM F;  4C2M F;  1ZYR E;  1I3Q F;  3I4M E;  3I4M F;  4A3I F;  5FJ8 E;  3GTG E;  4A3G F;  4X6A E;  4BY7 F;  4BY1 E;  4JK1 E;  2O5I E;  4YG2 E;  4A3E E;  2WAQ K;  1TWG E;  2JA6 E;  2CW0 E;  2JA7 E;  3DXJ E;  3H0G F;  4OIO E;  3GTK E;  3GTK F;  5C3E F;  2R93 F;  4A3B E;  4XSZ E;  4C3J E;  3S1M E;  4C3J F;  1SFO E;  3HOW E;  2NVX E;  1HQM E;  2NVY F;  5D4C E;  4G7Z E;  4OIR E;  4KN4 E;  2NVT F;  5IYB F;  2YU9 E;  3H3V G;  3HOV E;  5E18 E;  5C4J E;  3S16 E;  2JA8 F;  3PO3 F;  3HOY F;  4XLN E;  3GTJ F;  5M3F E;  4XSX E;  2O5J E;  3S1N E;  3S1N F;  4LK1 E;  4YFX E;  4Y7N E;  1R9T F;  2NVQ F;  5IP7 F;  3S15 F;  5M3M E;  4AYB H;  3CQZ F;  5M3M F;  4C3I E;  3GTP E;  1WCM E;  4LLG E;  4YFK E;  2VUM E;  2VUM F;  3GTL E;  5FLM E;  4C2M E;  3GTQ F;  5M5Y E;  5M5Y F;  1I3Q E;  1I6H E;  4A3I E;  1I6H F;  4A3G E;  4BY7 E;  4A3M F;  2A68 E;  2JA5 F;  5M5W F;  4A3J F;  2R92 F;  3GTO E;  2KRX A;  2A6H E;  3H0G E;  3GTO F;  4C3H E;  5C3E E;  4C3H F;  3S2H F;  2R93 E;  3HOZ F;  5C4X F;  5IP9 F;  3M3Y F;  2WAQ H;  2NVY E;  4LJZ E;  2NVT E;  5IYB E;  3HOU F;  5M5X F;  1Y1V F;  4GZY E;  2JA8 E;  4OIP E;  3HOY E;  3PO3 E;  3S2D E;  3S2D F;  4G7O E;  3S1R F;  3GTJ E;  1TWC F;  1TWG F;  2BE5 E;  2B63 F;  1EIK A;  1R9T E;  2NVQ E;  3PO2 F;  5IP7 E;  3S15 E;  2A69 E;  3CQZ E;  3HKZ K;  1YNJ K;  2WB1 I;  3RZO F;  4G7H E;  1K83 E;  4A3C F;  1K83 F;  4BBR F;  1I50 F;  4BXX F;  3GTQ E;  2E2I F;  3WOD E;  2E2J F;  2PMZ K;  2WB1 H;  3GTM F;  4Q5S E;  4Y52 F;  1DZF A;  2PPB E;  1Y1W E;  5D4D E;  4A3M E;  4A3F F;  1Y1W F;  3S17 F;  3S17 E;  2A6E E;  3HOX F;  3S14 F;  2JA5 E;  4A93 F;  5M5W E;  5IYC F;  1QKL A;  4A3J E;  2R92 E;  1YNN K;  3FKI F;  2Y0S I;  4ZH4 E;  4OIN E;  3S2H E;  4QIW K;  3HOZ E;  3S1Q F;  3K7A F;  5C4X E;  5TMC E;  5IP9 E;  3M3Y E;  2E2H F;  3M4O F;  3I4N F;  2R7Z F;  1TWA F;  4A3L F;  2Y0S H;  3HOU E;  5M5X E;  5BYH E;  1Y1V E;  1TWF F;  3S1R E;  5C44 F;  1TWC E;  2B63 E; 
#chains in the Genus database with same CATH homology
 3RZD F;  5IYD F;  4A3K F;  4BBS F;  4A3D F;  5E17 E;  5FJ8 F;  3GTG F;  4OIQ E;  4X6A F;  4BY1 F;  4A3E F;  2JA6 F;  5IPL E;  2JA7 F;  5TMF E;  1SMY E;  4XLP E;  5D4E E;  1TWH F;  4A3B F;  1IW7 E;  4MQ9 E;  3S1M F;  4KMU E;  1SFO F;  3HOW F;  2NVX F;  3GTP F;  4YFN E;  4Q4Z E;  2YU9 F;  4MEY E;  5C4J F;  3HOV F;  3S16 F;  4AYB K;  4LK0 E;  5M3F F;  1I6V E;  3EQL E;  4Y7N F;  4C3I F;  1WCM F;  4MEX E;  3GTL F;  4KN7 E;  5FLM F;  4C2M F;  1ZYR E;  1I3Q F;  3I4M F;  4A3I F;  4A3G F;  4BY7 F;  4JK1 E;  2O5I E;  4YG2 E;  2WAQ K;  2CW0 E;  3DXJ E;  3H0G F;  4OIO E;  3GTK F;  5C3E F;  2R93 F;  4XSZ E;  4C3J F;  1HQM E;  2NVY F;  5D4C E;  4G7Z E;  4OIR E;  4KN4 E;  2NVT F;  5IYB F;  3H3V G;  4GZY E;  5E18 E;  2JA8 F;  3PO3 F;  3HOY F;  4XLN E;  3GTJ F;  4XSX E;  2O5J E;  3S1N F;  4YFX E;  4LK1 E;  1R9T F;  2NVQ F;  5IP7 F;  3S15 F;  3CQZ F;  5M3M F;  4LLG E;  4YFK E;  2VUM F;  3GTQ F;  5M5Y F;  1I6H F;  4A3M F;  2A68 E;  2JA5 F;  5M5W F;  4A3J F;  2R92 F;  2KRX A;  2A6H E;  3GTO F;  3S2H F;  4C3H F;  3HOZ F;  5C4X F;  5IP9 F;  3M3Y F;  4LJZ E;  3HOU F;  5M5X F;  1Y1V F;  4OIP E;  4G7O E;  3S2D F;  3S1R F;  1TWC F;  1TWG F;  2BE5 E;  2B63 F;  3PO2 F;  2A69 E;  3HKZ K;  1YNJ K;  2WB1 I;  3RZO F;  4G7H E;  4A3C F;  1K83 F;  4BBR F;  1I50 F;  4BXX F;  2E2I F;  3WOD E;  2E2J F;  2PMZ K;  3GTM F;  4Q5S E;  4Y52 F;  2PPB E;  5D4D E;  1Y1W F;  4A3F F;  3S17 F;  2A6E E;  3HOX F;  3S14 F;  4A93 F;  5IYC F;  1QKL A;  1YNN K;  3FKI F;  2Y0S I;  4ZH4 E;  4OIN E;  3S1Q F;  4QIW K;  3K7A F;  5TMC E;  2E2H F;  3M4O F;  3I4N F;  2R7Z F;  1TWA F;  4A3L F;  5BYH E;  1TWF F;  5C44 F; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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