3B18 | Genus

Total Genus 40

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	40
sequence length	168
structure length	167
Chain Sequence	SGTVPIAEELLARVLEPYSCKGCRYLIDAQYSATEDSVLAYGNFTIGESAYIRSTGHFNAVELILCFNQLAYSAFAPAVLNEEIRVLRGWSIDDYCQHQLSSMLIRKASSRFRKPLNPQKFSARLLCRDLQVIERTWRYLKVPCVIEFWDNGGAASGEIELAALNIP

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Hydrolase
source organism	Mycobacterium tuberculosis
publication title	Insights into the Substrate Specificity of a Thioesterase Rv0098 of Mycobacterium Tuberculosis through X-ray Crystallographic and Molecular Dynamics Studies pubmed rcsb
molecule keywords	Uncharacterized protein Rv0098/MT0107
total genus	40
structure length	167
sequence length	168
ec nomenclature
pdb deposition date	2011-06-26

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF10862	FcoT	FcoT-like thioesterase domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.10.129.30	Alpha Beta	Roll	Thiol Ester Dehydrase; Chain A	Thiol Ester Dehydrase; Chain A	3b18A00

2PFCA 3B18A
chains in the Genus database with same CATH superfamily

5E1VA 3KVUA 2OIWA 3KX8A 4U3VA 2EISA 4RLTA 2VZ9A 3ZH7B 4AE8A 1VH9A 3DP1A 4KEHA 2HBOA 1C8UA 4AE7A 2PIMA 1SH8A 3IR3A 2HLJA 3K67A 3WEWA 1VI8A 3LBBA 2UV8G 2NUJA 3R34A 1WLVA 3S6PA 1Q4TA 3CF8A 3E1EA 4A0XA 2GLMA 3KUVA 4M20A 1Z6BA 5BUWA 5BYUA 2O6UA 1LO7A 3CK1A 4QDBA 4QD9A 4HZNA 3TEAA 5HWFA 3U0AA 3AZ9A 3R87A 4ZW0A 2CWZA 4H4GA 4I83A 1LO8A 3KG9A 4A12A 2B3MA 1J1YA 4CL6A 2XFLA 3KHPA 2AV9A 3GEKA 2CYEA 5SZUA 1BVQA 4A0YA 5SZVA 4OOBA 4A0ZA 1IXLA 3LBEA 3KW1A 1YOCA 3LZ7A 5EGLA 4B0JA 4E3EA 3D6LA 2Q78A 1S9CA 2VZ8A 3E8PA 3P2RA 5EGJA 4ZV3A 2QWZA 1VH5A 4K4BA 2PZHA 4RLUB 1PN2A 1PSUA 4R9ZA 3R3DA 4I82A 2ESSA 4R4UA 5CPGA 4QD8A 4RLJA 3DOZA 3DP3A 3QOOA 3B7JA 3EXZA 3HRQA 4ORDA 5EGKA 1U1ZA 3Q62A 3BBJA 3ZH7A 1OHFA 4W78B 2GF6A 2GLVA 2OKIA 2OV9A 3BJKA 3KV7A 1WLUA 3NWZA 4K4DA 4MOCA 4B8UA 3R35A 4ZJBA 3AZBA 2FS2A 2HX5A 3CF9A 4XY5A 3KH8A 5T02A 3SPSA 2F41A 4RLWB 4ZRBA 3P3IA 2GLLA 2O5UA 4WNBB 1MKAA 1PN4A 1WM6A 3KG7A 3KVZA 1IQ6A 1Q4UA 5T07A 2QQPA 4HZOA 2F3XA 3P3FA 4K00A 4K4CA 5HD6A 5EO2A 1TBUA 3KUWA 4KC5A 4QDAA 4RV2B 3ZH5A 2CY9A 3HM0A 4W78A 2H4UA 3KG8A 2EGRA 5BUYA 3DKZA 3OMLA 4B0CA 2O6BA 1Q4SA 2OKHA 3KVIA 3LMBA 2OAFA 3R32A 3P2QA 5KL9A 3F5OA 4RLTB 5HMBA 1YLIA 5T06A 3DP2A 3R3CA 4QFWA 3B7KA 4MOBA 1T82A 3E29A 3R3AA 4GAHA 3HDUA 2BI0A 3DOYA 5DM5A 1SC0A 3EL6A 1ZHGA 3R3BA 3DP0A 3S4KA 5SZZA 4K4AA 3LW3A 4YBVA 3RD7A 2XEMA 4K02A 2DSLA 3KX7A 4ZRFA 4QD7A 2GLPA 4RLUA 5SZYA 1WN3A 4I4JA 5EO4A 3KG6A 1SBKA 4NCPA 4RMMA 2PRXA 3ESIA 2O6TA 1S5UA 4FQ9A 3HRRA 2W3XA 2OWNA 3LWGA 4MZQA 4XY6A 3BNVA 3F1TA 3D6XA 4GAKA 2EGIA 4K49A 4B0IA 1LO9A 5BUXA 4LN9A 3P2SA 2EGJA 4B0BA 1ZKIA 2B6EA 5EP5A 2PFCA 3AZ8A 2QQ2A 3KV8A 4MTUA 3R37A 2F0XA 3ED0A 3R36A 4RLWA 5HZ4A 2C2IA 5BP2A 2GVHA 1Y7UA 4WNBA 5F6RA 3B18A 3CJYA 3R3FA 1VPMA 4HZPA 5BP3A 5HMCA 3D04A 2VKZG 3QY3A 4IENA 5KKUA 3HMJG 1NJKA 2V1OA 5DIOA 1Q6WA 4RV2A 4OOCA 1MKBA 4RLJB 4I45A 3RQBA 3ZH6A 3AZAA 2FUJA 4FFUA 3FRNA 2Q2BA 1Z54A
chains in the Genus database with same CATH topology

5E1VA 3KG6A 4U3VA 3KG7A 2VZ9A 3ZH7B 2QQPA 2VZ8A 3HRRA 3U0AA 4KC5A 3ZH5A 3KG8A 4LN9A 2UV8G 4R9ZA 3S6PA 2PFCA 4R4UA 4QFWA 3HRQA 5BP2A 3CJYA 3B18A 3BBJA 3ZH7A 1OHFA 3EL6A 5BP3A 5KKUA 3KG9A 3HMJG 3RD7A 4OOCA 3RQBA 3ZH6A 3FRNA 2VKZG
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2PFC A;  3B18 A; 
#chains in the Genus database with same CATH topology
 5E1V A;  3KVU A;  2OIW A;  3KX8 A;  4U3V A;  2EIS A;  4RLT A;  2VZ9 A;  3ZH7 B;  4AE8 A;  1VH9 A;  3DP1 A;  4KEH A;  2HBO A;  1C8U A;  4AE7 A;  2PIM A;  1SH8 A;  3IR3 A;  2HLJ A;  3K67 A;  3WEW A;  1VI8 A;  3LBB A;  2UV8 G;  2NUJ A;  3R34 A;  1WLV A;  3S6P A;  1Q4T A;  3CF8 A;  3E1E A;  4A0X A;  2GLM A;  3KUV A;  4M20 A;  1Z6B A;  5BUW A;  5BYU A;  2O6U A;  1LO7 A;  3CK1 A;  4QDB A;  4QD9 A;  4HZN A;  3TEA A;  5HWF A;  3U0A A;  3AZ9 A;  3R87 A;  4ZW0 A;  2CWZ A;  4H4G A;  4I83 A;  1LO8 A;  3KG9 A;  4A12 A;  2B3M A;  1J1Y A;  4CL6 A;  2XFL A;  3KHP A;  2AV9 A;  3GEK A;  2CYE A;  5SZU A;  1BVQ A;  4A0Y A;  5SZV A;  4OOB A;  4A0Z A;  1IXL A;  3LBE A;  3KW1 A;  1YOC A;  3LZ7 A;  5EGL A;  4B0J A;  4E3E A;  3D6L A;  2Q78 A;  1S9C A;  2VZ8 A;  3E8P A;  3P2R A;  5EGJ A;  4ZV3 A;  2QWZ A;  1VH5 A;  4K4B A;  2PZH A;  4RLU B;  1PN2 A;  1PSU A;  4R9Z A;  3R3D A;  4I82 A;  2ESS A;  4R4U A;  5CPG A;  4QD8 A;  4RLJ A;  3DOZ A;  3DP3 A;  3QOO A;  3B7J A;  3EXZ A;  3HRQ A;  4ORD A;  5EGK A;  1U1Z A;  3Q62 A;  3BBJ A;  3ZH7 A;  1OHF A;  4W78 B;  2GF6 A;  2GLV A;  2OKI A;  2OV9 A;  3BJK A;  3KV7 A;  1WLU A;  3NWZ A;  4K4D A;  4MOC A;  4B8U A;  3R35 A;  4ZJB A;  3AZB A;  2FS2 A;  2HX5 A;  3CF9 A;  4XY5 A;  3KH8 A;  5T02 A;  3SPS A;  2F41 A;  4RLW B;  4ZRB A;  3P3I A;  2GLL A;  2O5U A;  4WNB B;  1MKA A;  1PN4 A;  1WM6 A;  3KG7 A;  3KVZ A;  1IQ6 A;  1Q4U A;  5T07 A;  2QQP A;  4HZO A;  2F3X A;  3P3F A;  4K00 A;  4K4C A;  5HD6 A;  5EO2 A;  1TBU A;  3KUW A;  4KC5 A;  4QDA A;  4RV2 B;  3ZH5 A;  2CY9 A;  3HM0 A;  4W78 A;  2H4U A;  3KG8 A;  2EGR A;  5BUY A;  3DKZ A;  3OML A;  4B0C A;  2O6B A;  1Q4S A;  2OKH A;  3KVI A;  3LMB A;  2OAF A;  3R32 A;  3P2Q A;  5KL9 A;  3F5O A;  4RLT B;  5HMB A;  1YLI A;  5T06 A;  3DP2 A;  3R3C A;  4QFW A;  3B7K A;  4MOB A;  1T82 A;  3E29 A;  3R3A A;  4GAH A;  3HDU A;  2BI0 A;  3DOY A;  5DM5 A;  1SC0 A;  3EL6 A;  1ZHG A;  3R3B A;  3DP0 A;  3S4K A;  5SZZ A;  4K4A A;  3LW3 A;  4YBV A;  3RD7 A;  2XEM A;  4K02 A;  2DSL A;  3KX7 A;  4ZRF A;  4QD7 A;  2GLP A;  4RLU A;  5SZY A;  1WN3 A;  4I4J A;  5EO4 A;  3KG6 A;  1SBK A;  4NCP A;  4RMM A;  2PRX A;  3ESI A;  2O6T A;  1S5U A;  4FQ9 A;  3HRR A;  2W3X A;  2OWN A;  3LWG A;  4MZQ A;  4XY6 A;  3BNV A;  3F1T A;  3D6X A;  4GAK A;  2EGI A;  4K49 A;  4B0I A;  1LO9 A;  5BUX A;  4LN9 A;  3P2S A;  2EGJ A;  4B0B A;  1ZKI A;  2B6E A;  5EP5 A;  2PFC A;  3AZ8 A;  2QQ2 A;  3KV8 A;  4MTU A;  3R37 A;  2F0X A;  3ED0 A;  3R36 A;  4RLW A;  5HZ4 A;  2C2I A;  5BP2 A;  2GVH A;  1Y7U A;  4WNB A;  5F6R A;  3B18 A;  3CJY A;  3R3F A;  1VPM A;  4HZP A;  5BP3 A;  5HMC A;  3D04 A;  2VKZ G;  3QY3 A;  4IEN A;  5KKU A;  3HMJ G;  1NJK A;  2V1O A;  5DIO A;  1Q6W A;  4RV2 A;  4OOC A;  1MKB A;  4RLJ B;  4I45 A;  3RQB A;  3ZH6 A;  3AZA A;  2FUJ A;  4FFU A;  3FRN A;  2Q2B A;  1Z54 A; 
#chains in the Genus database with same CATH homology
 5E1V A;  3KG6 A;  4U3V A;  3KG7 A;  2VZ9 A;  3ZH7 B;  2QQP A;  2VZ8 A;  3HRR A;  3U0A A;  4KC5 A;  3ZH5 A;  3KG8 A;  4LN9 A;  2UV8 G;  4R9Z A;  3S6P A;  2PFC A;  4R4U A;  4QFW A;  3HRQ A;  5BP2 A;  3CJY A;  3B18 A;  3BBJ A;  3ZH7 A;  1OHF A;  3EL6 A;  5BP3 A;  5KKU A;  3KG9 A;  3HMJ G;  3RD7 A;  4OOC A;  3RQB A;  3ZH6 A;  3FRN A;  2VKZ G;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3B18A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations