3B18A

Rv0098 of mycobacterium tuberculosis with ordered loop between beta-4 and beta-5
Total Genus 40
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
40
sequence length
168
structure length
167
Chain Sequence
SGTVPIAEELLARVLEPYSCKGCRYLIDAQYSATEDSVLAYGNFTIGESAYIRSTGHFNAVELILCFNQLAYSAFAPAVLNEEIRVLRGWSIDDYCQHQLSSMLIRKASSRFRKPLNPQKFSARLLCRDLQVIERTWRYLKVPCVIEFWDNGGAASGEIELAALNIP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Insights into the Substrate Specificity of a Thioesterase Rv0098 of Mycobacterium Tuberculosis through X-ray Crystallographic and Molecular Dynamics Studies
pubmed rcsb
molecule tags Hydrolase
source organism Mycobacterium tuberculosis
molecule keywords Uncharacterized protein Rv0098/MT0107
total genus 40
structure length 167
sequence length 168
ec nomenclature
pdb deposition date 2011-06-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF10862 FcoT FcoT-like thioesterase domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.129.30 Alpha Beta Roll Thiol Ester Dehydrase; Chain A Thiol Ester Dehydrase; Chain A 3b18A00
2PFCA 3B18A
chains in the Genus database with same CATH superfamily
3KUVA 3S6PA 4K00A 3KUWA 3P2RA 4RLJB 3R36A 1IQ6A 5HZ4A 4HZNA 2W3XA 4FQ9A 3B7JA 5SZUA 3FRNA 3Q62A 2GF6A 3DOYA 2UV8G 3DP2A 3ZH6A 1Q6WA 2CY9A 4K4AA 4R4UA 3R32A 4K4BA 3B7KA 3KX7A 3KH8A 4OOBA 3BBJA 3LBBA 3BJKA 5HD6A 1U1ZA 3TEAA 5T06A 2QWZA 4I83A 3E8PA 2CYEA 1TBUA 1PN4A 4ORDA 4XY5A 3S4KA 1C8UA 3DOZA 3SPSA 2Q2BA 1BVQA 1SBKA 2CWZA 2OIWA 4GAKA 1S5UA 2GLMA 4YBVA 3P2QA 5EO4A 2PFCA 5T07A 3ESIA 4XY6A 4ZRFA 4B8UA 2GLLA 2PZHA 4WNBB 4AE8A 5BP2A 3ED0A 4ZJBA 2GLPA 4U3VA 4RLWA 3F5OA 4B0BA 4CL6A 3D6LA 1YOCA 2EGIA 3D6XA 3R3AA 4LN9A 4QDBA 1VPMA 4QD7A 5DM5A 3HDUA 5EGKA 3RD7A 4FFUA 3DKZA 2XFLA 1WM6A 2VKZG 4OOCA 2OKIA 3CJYA 1LO8A 5EP5A 3ZH7A 4A0ZA 2F3XA 3KW1A 4WNBA 1Q4UA 4M20A 2EGJA 5F6RA 3LZ7A 2EGRA 3LWGA 1YLIA 3E29A 4AE7A 5BUXA 5BYUA 1Z54A 3EXZA 4A0YA 2F0XA 5BUWA 3HMJG 1OHFA 1PSUA 4MTUA 1VH5A 1Z6BA 1ZHGA 3P2SA 5KL9A 4RLWB 5KKUA 1LO7A 2OV9A 3HRRA 3LMBA 2O6UA 1WLVA 3LBEA 3R3BA 4RV2B 2DSLA 3KVZA 2FS2A 1VI8A 1WN3A 5BUYA 3QOOA 1SC0A 3KG6A 2F41A 5SZVA 3ZH7B 1NJKA 3EL6A 4QD9A 2QQPA 5CPGA 4B0IA 3OMLA 4I82A 3QY3A 2BI0A 3KHPA 2HBOA 4IENA 4QD8A 2ESSA 4KEHA 4MOCA 4RV2A 3B18A 4B0CA 1WLUA 5SZZA 4A12A 4ZRBA 1T82A 3KVIA 4RLUB 2PRXA 4K4CA 3ZH5A 3R35A 2HLJA 3KV8A 1LO9A 4W78A 3WEWA 2QQ2A 1Y7UA 2V1OA 3AZAA 2O6TA 2VZ9A 4I45A 4B0JA 4H4GA 4E3EA 5BP3A 5HWFA 5T02A 4K4DA 2B6EA 3KG8A 3KX8A 3CF9A 4K49A 5HMBA 1PN2A 3CK1A 2XEMA 3HRQA 1MKAA 4RLTA 4RLUA 5EO2A 1MKBA 3R87A 3F1TA 5DIOA 1S9CA 3DP1A 4K02A 3P3FA 3BNVA 3AZBA 3AZ8A 4QFWA 3K67A 1SH8A 3KG7A 3KV7A 4ZV3A 3CF8A 4W78B 1J1YA 2OAFA 2OKHA 3KVUA 5EGJA 3NWZA 4I4JA 3DP0A 3AZ9A 2NUJA 2O5UA 1ZKIA 3IR3A 2O6BA 1VH9A 3DP3A 3R34A 2FUJA 4HZOA 3RQBA 2GLVA 2PIMA 4GAHA 4MOBA 4MZQA 2C2IA 4RLTB 2B3MA 5SZYA 3U0AA 2HX5A 4HZPA 2VZ8A 2H4UA 5EGLA 4ZW0A 4RLJA 4QDAA 3HM0A 4RMMA 4NCPA 4R9ZA 3R3FA 3KG9A 2GVHA 3GEKA 2EISA 3R3CA 1IXLA 3LW3A 3P3IA 2OWNA 3R3DA 5E1VA 5HMCA 2Q78A 1Q4TA 4KC5A 4A0XA 3R37A 1Q4SA 3D04A 2AV9A 3E1EA
chains in the Genus database with same CATH topology
4LN9A 3S6PA 3RD7A 3B18A 2VKZG 4OOCA 3CJYA 3FRNA 3RQBA 3ZH6A 3ZH7A 2UV8G 3ZH5A 4R4UA 3U0AA 2VZ8A 3BBJA 2VZ9A 5BP3A 3HMJG 1OHFA 3KG8A 4R9ZA 5KKUA 3KG9A 3HRQA 3HRRA 2PFCA 5E1VA 3KG6A 3ZH7B 4KC5A 3EL6A 4QFWA 3KG7A 5BP2A 2QQPA 4U3VA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2PFC A;  3B18 A; 
#chains in the Genus database with same CATH topology
 3KUV A;  3S6P A;  4K00 A;  3KUW A;  3P2R A;  4RLJ B;  3R36 A;  1IQ6 A;  5HZ4 A;  4HZN A;  2W3X A;  4FQ9 A;  3B7J A;  5SZU A;  3FRN A;  3Q62 A;  2GF6 A;  3DOY A;  2UV8 G;  3DP2 A;  3ZH6 A;  1Q6W A;  2CY9 A;  4K4A A;  4R4U A;  3R32 A;  4K4B A;  3B7K A;  3KX7 A;  3KH8 A;  4OOB A;  3BBJ A;  3LBB A;  3BJK A;  5HD6 A;  1U1Z A;  3TEA A;  5T06 A;  2QWZ A;  4I83 A;  3E8P A;  2CYE A;  1TBU A;  1PN4 A;  4ORD A;  4XY5 A;  3S4K A;  1C8U A;  3DOZ A;  3SPS A;  2Q2B A;  1BVQ A;  1SBK A;  2CWZ A;  2OIW A;  4GAK A;  1S5U A;  2GLM A;  4YBV A;  3P2Q A;  5EO4 A;  2PFC A;  5T07 A;  3ESI A;  4XY6 A;  4ZRF A;  4B8U A;  2GLL A;  2PZH A;  4WNB B;  4AE8 A;  5BP2 A;  3ED0 A;  4ZJB A;  2GLP A;  4U3V A;  4RLW A;  3F5O A;  4B0B A;  4CL6 A;  3D6L A;  1YOC A;  2EGI A;  3D6X A;  3R3A A;  4LN9 A;  4QDB A;  1VPM A;  4QD7 A;  5DM5 A;  3HDU A;  5EGK A;  3RD7 A;  4FFU A;  3DKZ A;  2XFL A;  1WM6 A;  2VKZ G;  4OOC A;  2OKI A;  3CJY A;  1LO8 A;  5EP5 A;  3ZH7 A;  4A0Z A;  2F3X A;  3KW1 A;  4WNB A;  1Q4U A;  4M20 A;  2EGJ A;  5F6R A;  3LZ7 A;  2EGR A;  3LWG A;  1YLI A;  3E29 A;  4AE7 A;  5BUX A;  5BYU A;  1Z54 A;  3EXZ A;  4A0Y A;  2F0X A;  5BUW A;  3HMJ G;  1OHF A;  1PSU A;  4MTU A;  1VH5 A;  1Z6B A;  1ZHG A;  3P2S A;  5KL9 A;  4RLW B;  5KKU A;  1LO7 A;  2OV9 A;  3HRR A;  3LMB A;  2O6U A;  1WLV A;  3LBE A;  3R3B A;  4RV2 B;  2DSL A;  3KVZ A;  2FS2 A;  1VI8 A;  1WN3 A;  5BUY A;  3QOO A;  1SC0 A;  3KG6 A;  2F41 A;  5SZV A;  3ZH7 B;  1NJK A;  3EL6 A;  4QD9 A;  2QQP A;  5CPG A;  4B0I A;  3OML A;  4I82 A;  3QY3 A;  2BI0 A;  3KHP A;  2HBO A;  4IEN A;  4QD8 A;  2ESS A;  4KEH A;  4MOC A;  4RV2 A;  3B18 A;  4B0C A;  1WLU A;  5SZZ A;  4A12 A;  4ZRB A;  1T82 A;  3KVI A;  4RLU B;  2PRX A;  4K4C A;  3ZH5 A;  3R35 A;  2HLJ A;  3KV8 A;  1LO9 A;  4W78 A;  3WEW A;  2QQ2 A;  1Y7U A;  2V1O A;  3AZA A;  2O6T A;  2VZ9 A;  4I45 A;  4B0J A;  4H4G A;  4E3E A;  5BP3 A;  5HWF A;  5T02 A;  4K4D A;  2B6E A;  3KG8 A;  3KX8 A;  3CF9 A;  4K49 A;  5HMB A;  1PN2 A;  3CK1 A;  2XEM A;  3HRQ A;  1MKA A;  4RLT A;  4RLU A;  5EO2 A;  1MKB A;  3R87 A;  3F1T A;  5DIO A;  1S9C A;  3DP1 A;  4K02 A;  3P3F A;  3BNV A;  3AZB A;  3AZ8 A;  4QFW A;  3K67 A;  1SH8 A;  3KG7 A;  3KV7 A;  4ZV3 A;  3CF8 A;  4W78 B;  1J1Y A;  2OAF A;  2OKH A;  3KVU A;  5EGJ A;  3NWZ A;  4I4J A;  3DP0 A;  3AZ9 A;  2NUJ A;  2O5U A;  1ZKI A;  3IR3 A;  2O6B A;  1VH9 A;  3DP3 A;  3R34 A;  2FUJ A;  4HZO A;  3RQB A;  2GLV A;  2PIM A;  4GAH A;  4MOB A;  4MZQ A;  2C2I A;  4RLT B;  2B3M A;  5SZY A;  3U0A A;  2HX5 A;  4HZP A;  2VZ8 A;  2H4U A;  5EGL A;  4ZW0 A;  4RLJ A;  4QDA A;  3HM0 A;  4RMM A;  4NCP A;  4R9Z A;  3R3F A;  3KG9 A;  2GVH A;  3GEK A;  2EIS A;  3R3C A;  1IXL A;  3LW3 A;  3P3I A;  2OWN A;  3R3D A;  5E1V A;  5HMC A;  2Q78 A;  1Q4T A;  4KC5 A;  4A0X A;  3R37 A;  1Q4S A;  3D04 A;  2AV9 A;  3E1E A; 
#chains in the Genus database with same CATH homology
 4LN9 A;  3S6P A;  3RD7 A;  3B18 A;  2VKZ G;  4OOC A;  3CJY A;  3FRN A;  3RQB A;  3ZH6 A;  3ZH7 A;  2UV8 G;  3ZH5 A;  4R4U A;  3U0A A;  2VZ8 A;  3BBJ A;  2VZ9 A;  5BP3 A;  3HMJ G;  1OHF A;  3KG8 A;  4R9Z A;  5KKU A;  3KG9 A;  3HRQ A;  3HRR A;  2PFC A;  5E1V A;  3KG6 A;  3ZH7 B;  4KC5 A;  3EL6 A;  4QFW A;  3KG7 A;  5BP2 A;  2QQP A;  4U3V A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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