3D8K | Genus

Total Genus 69

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	69
sequence length	357
structure length	348
Chain Sequence	MSLRHLYIEEGRTVCASATSRNRRPTSESDDVVVVEGMLRGRPETRVHAMFDGFQGRHSAMWLAQNVMNYLNDLRDVNEEEITRQFERMDGDLRAANLPGGSSALIIFVRYEKKPTEARVVGRQIVPEGFTSVAEALGGPLMPVVAMNFRRDPRAAKGIYTIHVASLGNSRCVLKSGRTAIHLSTPHTASSHKERHRVQAAGGVFTTVNGELLLGGVVPMTRAFGSFDFKKGKLQQDLVSAVPDVTTFFAYPGDDIVAGTAGAFAHFRSHAAIAAAIALYPVSPETVLDAAKAMVVNAKRRKVTKNISTFVRHLPESRTRSQKMLEGTSGENGEEDFSIDRTNELTQA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Hydrolase
source organism	Toxoplasma gondii
publication title	Crsytal structure of a phosphatase from a toxoplasma gondii rcsb
molecule keywords	Protein phosphatase 2C
total genus	69
structure length	348
sequence length	357
chains with identical sequence	B, C, D
ec nomenclature
pdb deposition date	2008-05-23

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00481	PP2C	Protein phosphatase 2C

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.60.40.10	Alpha Beta	4-Layer Sandwich	Phosphatase 2c; domain 1	PPM-type phosphatase domain	3d8kA00

3UJGB 4RAFA 2I0OA 3T91A 4N0GA 3D8KA 5D2UA 3ZVUB 3FXLA 1A6QA 3W45A 4OICB 3RT0A 4JNDA 2ISNA 2IQ1A 3JRQA 2IRMA 3KB3B 3W40A 3W41A 4DA1A 3UJLB 2JFTA 3NMNB 5F1MA 3MQ3A 2J4OA 2I44A 5ITIA 2J82A 2PNQA 4LA7B 3FXMA 3QN1B 3W44A 3ZT9A 4LG5B 4DS8B 4YZGA 3F79A 3W42A 3ES2A 4RAGA 3N3CA 2CM1A 3PU9A 4RA2A 3T9QA 3FXKA 5JO2B 4WVOB 2XZVA 3FXJA 3FXOA 2POMA 3UJKA 2V06A 4YZHA 3RNRA 2J86A 3KDJB 2P8EA 3KE6A 2POPA 5JO1B 2JFSA 4LGAB 2Y09A 2JFRA 3W43A 4LGBB 1TXOA 3NMTB 3NMVB 3EQ2A 2PK0A
chains in the Genus database with same CATH superfamily

3UJGB 4RAFA 2I0OA 3T91A 4N0GA 3D8KA 5D2UA 3ZVUB 3FXLA 1A6QA 3W45A 4OICB 3RT0A 4JNDA 2ISNA 2IQ1A 3JRQA 2IRMA 3KB3B 3W40A 3W41A 4DA1A 3UJLB 4IIPA 2JFTA 3NMNB 5F1MA 3MQ3A 2J4OA 2I44A 5ITIA 2J82A 2PNQA 4LA7B 3FXMA 3QN1B 3W44A 3ZT9A 4LG5B 4DS8B 4YZGA 3F79A 3W42A 3ES2A 4RAGA 3N3CA 2CM1A 3PU9A 4RA2A 3T9QA 3FXKA 5JO2B 4WVOB 2XZVA 3FXJA 3FXOA 2POMA 3UJKA 2V06A 4YZHA 3RNRA 2J86A 3KDJB 2P8EA 3KE6A 2POPA 5JO1B 2JFSA 4IIKA 4LGAB 2Y09A 2JFRA 3W43A 4LGBB 1TXOA 3NMTB 3NMVB 3EQ2A 2PK0A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3UJG B;  4RAF A;  2I0O A;  3T91 A;  4N0G A;  3D8K A;  5D2U A;  3ZVU B;  3FXL A;  1A6Q A;  3W45 A;  4OIC B;  3RT0 A;  4JND A;  2ISN A;  2IQ1 A;  3JRQ A;  2IRM A;  3KB3 B;  3W40 A;  3W41 A;  4DA1 A;  3UJL B;  2JFT A;  3NMN B;  5F1M A;  3MQ3 A;  2J4O A;  2I44 A;  5ITI A;  2J82 A;  2PNQ A;  4LA7 B;  3FXM A;  3QN1 B;  3W44 A;  3ZT9 A;  4LG5 B;  4DS8 B;  4YZG A;  3F79 A;  3W42 A;  3ES2 A;  4RAG A;  3N3C A;  2CM1 A;  3PU9 A;  4RA2 A;  3T9Q A;  3FXK A;  5JO2 B;  4WVO B;  2XZV A;  3FXJ A;  3FXO A;  2POM A;  3UJK A;  2V06 A;  4YZH A;  3RNR A;  2J86 A;  3KDJ B;  2P8E A;  3KE6 A;  2POP A;  5JO1 B;  2JFS A;  4LGA B;  2Y09 A;  2JFR A;  3W43 A;  4LGB B;  1TXO A;  3NMT B;  3NMV B;  3EQ2 A;  2PK0 A; 
#chains in the Genus database with same CATH topology
 3UJG B;  4RAF A;  2I0O A;  3T91 A;  4N0G A;  3D8K A;  5D2U A;  3ZVU B;  3FXL A;  1A6Q A;  3W45 A;  4OIC B;  3RT0 A;  4JND A;  2ISN A;  2IQ1 A;  3JRQ A;  2IRM A;  3KB3 B;  3W40 A;  3W41 A;  4DA1 A;  3UJL B;  4IIP A;  2JFT A;  3NMN B;  5F1M A;  3MQ3 A;  2J4O A;  2I44 A;  5ITI A;  2J82 A;  2PNQ A;  4LA7 B;  3FXM A;  3QN1 B;  3W44 A;  3ZT9 A;  4LG5 B;  4DS8 B;  4YZG A;  3F79 A;  3W42 A;  3ES2 A;  4RAG A;  3N3C A;  2CM1 A;  3PU9 A;  4RA2 A;  3T9Q A;  3FXK A;  5JO2 B;  4WVO B;  2XZV A;  3FXJ A;  3FXO A;  2POM A;  3UJK A;  2V06 A;  4YZH A;  3RNR A;  2J86 A;  3KDJ B;  2P8E A;  3KE6 A;  2POP A;  5JO1 B;  2JFS A;  4IIK A;  4LGA B;  2Y09 A;  2JFR A;  3W43 A;  4LGB B;  1TXO A;  3NMT B;  3NMV B;  3EQ2 A;  2PK0 A; 
#chains in the Genus database with same CATH homology
 3UJG B;  4RAF A;  2I0O A;  3T91 A;  4N0G A;  3D8K A;  5D2U A;  3ZVU B;  3FXL A;  1A6Q A;  3W45 A;  4OIC B;  3RT0 A;  4JND A;  2ISN A;  2IQ1 A;  3JRQ A;  2IRM A;  3KB3 B;  3W40 A;  3W41 A;  4DA1 A;  3UJL B;  2JFT A;  3NMN B;  5F1M A;  3MQ3 A;  2J4O A;  2I44 A;  5ITI A;  2J82 A;  2PNQ A;  4LA7 B;  3FXM A;  3QN1 B;  3W44 A;  3ZT9 A;  4LG5 B;  4DS8 B;  4YZG A;  3F79 A;  3W42 A;  3ES2 A;  4RAG A;  3N3C A;  2CM1 A;  3PU9 A;  4RA2 A;  3T9Q A;  3FXK A;  5JO2 B;  4WVO B;  2XZV A;  3FXJ A;  3FXO A;  2POM A;  3UJK A;  2V06 A;  4YZH A;  3RNR A;  2J86 A;  3KDJ B;  2P8E A;  3KE6 A;  2POP A;  5JO1 B;  2JFS A;  4LGA B;  2Y09 A;  2JFR A;  3W43 A;  4LGB B;  1TXO A;  3NMT B;  3NMV B;  3EQ2 A;  2PK0 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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3D8KA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations