3D8K | Genus

Total Genus 69

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	69
sequence length	357
structure length	348
Chain Sequence	MSLRHLYIEEGRTVCASATSRNRRPTSESDDVVVVEGMLRGRPETRVHAMFDGFQGRHSAMWLAQNVMNYLNDLRDVNEEEITRQFERMDGDLRAANLPGGSSALIIFVRYEKKPTEARVVGRQIVPEGFTSVAEALGGPLMPVVAMNFRRDPRAAKGIYTIHVASLGNSRCVLKSGRTAIHLSTPHTASSHKERHRVQAAGGVFTTVNGELLLGGVVPMTRAFGSFDFKKGKLQQDLVSAVPDVTTFFAYPGDDIVAGTAGAFAHFRSHAAIAAAIALYPVSPETVLDAAKAMVVNAKRRKVTKNISTFVRHLPESRTRSQKMLEGTSGENGEEDFSIDRTNELTQA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 348 atoms

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348 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Hydrolase
source organism	Toxoplasma gondii
publication title	Crsytal structure of a phosphatase from a toxoplasma gondii rcsb
molecule keywords	Protein phosphatase 2C
total genus	69
structure length	348
sequence length	357
chains with identical sequence	B, C, D
ec nomenclature
pdb deposition date	2008-05-23

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00481	PP2C	Protein phosphatase 2C

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.60.40.10	Alpha Beta	4-Layer Sandwich	Phosphatase 2c; domain 1	PPM-type phosphatase domain	3d8kA00

4LA7B 2ISNA 4DA1A 4DS8B 2IRMA 2PK0A 4LGBB 3PU9A 3FXOA 3W45A 2POMA 3W41A 2V06A 4JNDA 3W42A 3NMNB 3UJGB 2CM1A 2I44A 2JFTA 3FXLA 4LGAB 3QN1B 3ES2A 4LG5B 4N0GA 5ITIA 2XZVA 5JO2B 4YZHA 3W40A 3FXKA 3W44A 3ZVUB 2J82A 2I0OA 3NMVB 3FXMA 3ZT9A 4RAGA 3N3CA 3T9QA 3KB3B 2JFRA 3EQ2A 3NMTB 3UJLB 2J86A 3KDJB 3T91A 2JFSA 3D8KA 3KE6A 3W43A 5JO1B 2Y09A 1TXOA 4YZGA 2J4OA 4OICB 2PNQA 2P8EA 3FXJA 3MQ3A 4WVOB 2POPA 1A6QA 3UJKA 5D2UA 5F1MA 3RNRA 2IQ1A 3F79A 4RAFA 4RA2A 3JRQA 3RT0A
chains in the Genus database with same CATH superfamily

4LA7B 2ISNA 4DA1A 4DS8B 2IRMA 2PK0A 4LGBB 3PU9A 3FXOA 3W45A 2POMA 3W41A 2V06A 4JNDA 3W42A 3NMNB 3UJGB 2CM1A 2I44A 2JFTA 3FXLA 4LGAB 3QN1B 3ES2A 4LG5B 4N0GA 5ITIA 2XZVA 5JO2B 4YZHA 3W40A 3FXKA 3W44A 3ZVUB 2J82A 2I0OA 3NMVB 3FXMA 3ZT9A 4RAGA 3N3CA 4IIKA 3T9QA 3KB3B 2JFRA 3EQ2A 3NMTB 3UJLB 2J86A 3KDJB 3T91A 2JFSA 3D8KA 3KE6A 3W43A 5JO1B 2Y09A 1TXOA 4YZGA 2J4OA 4OICB 2PNQA 2P8EA 4IIPA 3FXJA 3MQ3A 4WVOB 2POPA 1A6QA 3UJKA 5D2UA 5F1MA 3RNRA 2IQ1A 3F79A 4RAFA 4RA2A 3JRQA 3RT0A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 4LA7 B;  2ISN A;  4DA1 A;  4DS8 B;  2IRM A;  2PK0 A;  4LGB B;  3PU9 A;  3FXO A;  3W45 A;  2POM A;  3W41 A;  2V06 A;  4JND A;  3W42 A;  3NMN B;  3UJG B;  2CM1 A;  2I44 A;  2JFT A;  3FXL A;  4LGA B;  3QN1 B;  3ES2 A;  4LG5 B;  4N0G A;  5ITI A;  2XZV A;  5JO2 B;  4YZH A;  3W40 A;  3FXK A;  3W44 A;  3ZVU B;  2J82 A;  2I0O A;  3NMV B;  3FXM A;  3ZT9 A;  4RAG A;  3N3C A;  3T9Q A;  3KB3 B;  2JFR A;  3EQ2 A;  3NMT B;  3UJL B;  2J86 A;  3KDJ B;  3T91 A;  2JFS A;  3D8K A;  3KE6 A;  3W43 A;  5JO1 B;  2Y09 A;  1TXO A;  4YZG A;  2J4O A;  4OIC B;  2PNQ A;  2P8E A;  3FXJ A;  3MQ3 A;  4WVO B;  2POP A;  1A6Q A;  3UJK A;  5D2U A;  5F1M A;  3RNR A;  2IQ1 A;  3F79 A;  4RAF A;  4RA2 A;  3JRQ A;  3RT0 A; 
#chains in the Genus database with same CATH topology
 4LA7 B;  2ISN A;  4DA1 A;  4DS8 B;  2IRM A;  2PK0 A;  4LGB B;  3PU9 A;  3FXO A;  3W45 A;  2POM A;  3W41 A;  2V06 A;  4JND A;  3W42 A;  3NMN B;  3UJG B;  2CM1 A;  2I44 A;  2JFT A;  3FXL A;  4LGA B;  3QN1 B;  3ES2 A;  4LG5 B;  4N0G A;  5ITI A;  2XZV A;  5JO2 B;  4YZH A;  3W40 A;  3FXK A;  3W44 A;  3ZVU B;  2J82 A;  2I0O A;  3NMV B;  3FXM A;  3ZT9 A;  4RAG A;  3N3C A;  4IIK A;  3T9Q A;  3KB3 B;  2JFR A;  3EQ2 A;  3NMT B;  3UJL B;  2J86 A;  3KDJ B;  3T91 A;  2JFS A;  3D8K A;  3KE6 A;  3W43 A;  5JO1 B;  2Y09 A;  1TXO A;  4YZG A;  2J4O A;  4OIC B;  2PNQ A;  2P8E A;  4IIP A;  3FXJ A;  3MQ3 A;  4WVO B;  2POP A;  1A6Q A;  3UJK A;  5D2U A;  5F1M A;  3RNR A;  2IQ1 A;  3F79 A;  4RAF A;  4RA2 A;  3JRQ A;  3RT0 A; 
#chains in the Genus database with same CATH homology
 4LA7 B;  2ISN A;  4DA1 A;  4DS8 B;  2IRM A;  2PK0 A;  4LGB B;  3PU9 A;  3FXO A;  3W45 A;  2POM A;  3W41 A;  2V06 A;  4JND A;  3W42 A;  3NMN B;  3UJG B;  2CM1 A;  2I44 A;  2JFT A;  3FXL A;  4LGA B;  3QN1 B;  3ES2 A;  4LG5 B;  4N0G A;  5ITI A;  2XZV A;  5JO2 B;  4YZH A;  3W40 A;  3FXK A;  3W44 A;  3ZVU B;  2J82 A;  2I0O A;  3NMV B;  3FXM A;  3ZT9 A;  4RAG A;  3N3C A;  3T9Q A;  3KB3 B;  2JFR A;  3EQ2 A;  3NMT B;  3UJL B;  2J86 A;  3KDJ B;  3T91 A;  2JFS A;  3D8K A;  3KE6 A;  3W43 A;  5JO1 B;  2Y09 A;  1TXO A;  4YZG A;  2J4O A;  4OIC B;  2PNQ A;  2P8E A;  3FXJ A;  3MQ3 A;  4WVO B;  2POP A;  1A6Q A;  3UJK A;  5D2U A;  5F1M A;  3RNR A;  2IQ1 A;  3F79 A;  4RAF A;  4RA2 A;  3JRQ A;  3RT0 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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3D8KA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations