The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
207
|
sequence length |
753
|
structure length |
753
|
Chain Sequence |
NDWVYDEPRSVSVISREQMDNRPARHAADILEQTTGAYSSVSQQDPALSVNIRGIQDYGRVNMNIDGMRQNFQKSGHGQRNGTMYIDSELLSGVTIDKGTTGGMGSAGTLGGIATFNTVSASDFLAPGKELGGKLHASTGDNGTHFIGSGILALGNETGDILLAASERHLGDYWPGNKGDIGNIRINNDTGNYDRYAESIKNNKIPDTHYRMHSRLAKVGWNLPANQRLQLSYLQTQTASPIAGTLTNLGTRPPYELGWKRTGYTDVMARNAAFDYSLAPEDVDWLDFQAKLYYVDTQDDSDTYSTSSLLDNGYATRTRLRTYGAQAQNTSRFSLAPGHDFRANYGLEFYYDKATSDSSRQGMEGVTPAGNRSVASLFANLTYDYDGWLTLEGGLRYDRYRLRGQTGLSYPDLAKDGQRYTIDNPCKALRLTGCSTTTREDWDVDRDQGKLSPTLAVAVRPGVEWLELYTTYGKSWRPPAITETLTNGSAHSSSTQYPNPFLQPERSRAWEVGFNVQQPDLWFEGDRLVAKVAYFDTKVDNYINLAIDRNKPGLVQPSGGNAAYVNNLSKTRFRGLEYQLNYDAGVFYADLTYTHMIGKNEFCSNKAWLGGRLRYGDGSRRGNFYVEPDAASNDFVTCDGGTQFGSAAYLPGDRGSVTLGGRAFDRKLDAGVTVRFAPGYQDSSVPSNYPYLADWPKYTLFDLYASYKLTDSLTLRGSVENLTNRAYVVSYGETLANTLGRGRTVQGGVEYRF
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Heme uptake across the outer membrane as revealed by crystal structures of the receptor-hemophore complex.
pubmed doi rcsb |
| molecule tags |
Membrane protein/heme binding protein
|
| source organism |
Serratia marcescens
|
| molecule keywords |
HasR protein
|
| total genus |
207
|
| structure length |
753
|
| sequence length |
753
|
| chains with identical sequence |
B
|
| ec nomenclature | |
| pdb deposition date | 2008-06-06 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00593 | TonB_dep_Rec | TonB dependent receptor |
| A | PF07660 | STN | Secretin and TonB N terminus short domain |
| A | PF07715 | Plug | TonB-dependent Receptor Plug Domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Beta Barrel | Maltoporin; Chain A | TonB-dependent receptor, beta-barrel domain | ||
| Mainly Beta | Beta Complex | Ferric Hydroxamate Uptake Protein; Chain A, domain 1 | TonB-dependent receptor, plug domain |
#chains in the Genus database with same CATH superfamily 3M8D A; 3RGN A; 2YSU A; 3CSN A; 3CSL A; 4RDT A; 4AIP A; 1FEP A; 2W75 A; 2FCP A; 1BY3 A; 1NQF A; 4EPA A; 2GRX A; 2IAH A; 2W76 A; 1QJQ A; 4AIQ A; 1PO3 A; 2HDF A; 2O5P A; 4CU4 A; 1KMP A; 2W6U A; 2W78 A; 3M8B A; 4RDR A; 3RGM A; 1NQG A; 1PO0 A; 1PNZ A; 2W16 A; 5FOK A; 2HDI A; 3V89 A; 3QLB A; 1BY5 A; 1QFF A; 1KMO A; 2W77 A; 2W6T A; 3FHH A; 2GUF A; 2GSK A; 1UJW A; 4B7O A; 1XKW A; 1NQH A; 3V8X A; 3EFM A; 1FI1 A; 1XKH A; 1FCP A; 1QFG A; 3DDR A; 1NQE A; 1QKC A; #chains in the Genus database with same CATH topology 1MPQ A; 3M8D A; 3RGN A; 2YSU A; 3CSN A; 3CSL A; 1MPN A; 4RDT A; 4AIP A; 1A0S P; 1FEP A; 2W75 A; 2FCP A; 1BY3 A; 1NQF A; 1A0T P; 1AF6 A; 4EPA A; 2GRX A; 2IAH A; 2W76 A; 1QJQ A; 4AIQ A; 1PO3 A; 2HDF A; 2O5P A; 1MPO A; 4CU4 A; 1KMP A; 2W6U A; 2W78 A; 2MPR A; 3M8B A; 4RDR A; 3RGM A; 1NQG A; 1PO0 A; 1PNZ A; 2W16 A; 5FOK A; 1OH2 P; 1MAL A; 2HDI A; 3V89 A; 3QLB A; 1BY5 A; 1QFF A; 1KMO A; 2W77 A; 2W6T A; 1JBI A; 3FHH A; 2GUF A; 2GSK A; 1UJW A; 4B7O A; 1XKW A; 1MPR A; 1MPM A; 1NQH A; 3V8X A; 3EFM A; 1FI1 A; 1XKH A; 1FCP A; 1QFG A; 3DDR A; 1NQE A; 1OH2 Q; 1QKC A; #chains in the Genus database with same CATH homology 3M8D A; 3RGN A; 2YSU A; 3CSN A; 3CSL A; 4RDT A; 4AIP A; 1FEP A; 2W75 A; 2FCP A; 1BY3 A; 1NQF A; 4EPA A; 2GRX A; 2IAH A; 2W76 A; 1QJQ A; 4AIQ A; 1PO3 A; 2HDF A; 2O5P A; 4CU4 A; 1KMP A; 2W6U A; 2W78 A; 3M8B A; 4RDR A; 3RGM A; 1NQG A; 1PO0 A; 1PNZ A; 2W16 A; 5FOK A; 2HDI A; 3V89 A; 3QLB A; 1BY5 A; 1QFF A; 1KMO A; 2W77 A; 2W6T A; 3FHH A; 2GUF A; 2GSK A; 1UJW A; 4B7O A; 1XKW A; 1NQH A; 3V8X A; 3EFM A; 1FI1 A; 1XKH A; 1FCP A; 1QFG A; 3DDR A; 1NQE A; 1QKC A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
