3KB3 | Genus

Total Genus 83

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	83
sequence length	321
structure length	294
Chain Sequence	CIPLWGTVSIQGNRSEMEDAFAVSPHFLKLPIKMLLTGHFFGVYDGHGGHKVADYCRDRLHFALAEEIERRQVQWDKVFTSCFLTVDGEIEGKIGRAVVSSDKVLEAVASETVGSTAVVALVCSSHIVVSNCGDSRAVLFRGKEAMPLSVDHKPDREDEYARIENAGGKVIQWQGARVFGVLAMSRSIGDRYLKPYVIPEPEVTFMPRSREDECLILASDGLWDVMNNQEVCEIARRRILMWHKKNGAPPLAERGKGIDPACQAAADYLSMLALQKGSKDNISIIVIDLKAQRK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 294 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

294 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 24 ms

Adding embedded #jmolscript: select ({0:293});backbone only;select *;

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Signaling protein
source organism	Arabidopsis thaliana
publication title	Agate-latch-lock mechanism for hormone signalling by abscisic acid receptors rcsb
molecule keywords	Putative uncharacterized protein At2g26040
total genus	83
structure length	294
sequence length	321
ec nomenclature	ec 3.1.3.16: Protein-serine/threonine phosphatase.
pdb deposition date	2009-10-20

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
B	PF00481	PP2C	Protein phosphatase 2C

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.60.40.10	Alpha Beta	4-Layer Sandwich	Phosphatase 2c; domain 1	PPM-type phosphatase domain	3kb3B00

2POPA 2IRMA 3W42A 3W44A 2J4OA 3W40A 3W41A 2JFSA 2PNQA 5JO1B 2XZVA 4WVOB 4LGAB 5ITIA 5JO2B 3FXOA 2I44A 3KE6A 3FXJA 5D2UA 3NMVB 3W45A 4YZHA 2CM1A 3PU9A 2IQ1A 3W43A 4DA1A 2JFTA 3T91A 3MQ3A 4RAGA 5F1MA 3ZT9A 2Y09A 2PK0A 2J82A 3FXMA 2ISNA 2J86A 2JFRA 3ES2A 4LA7B 3UJGB 2V06A 3D8KA 3RT0A 3F79A 1TXOA 3RNRA 3KB3B 3QN1B 3FXKA 3NMTB 3NMNB 1A6QA 4JNDA 3EQ2A 2I0OA 4DS8B 3FXLA 4LGBB 2P8EA 3N3CA 4LG5B 3JRQA 3T9QA 2POMA 3UJKA 3UJLB 4N0GA 4RAFA 3KDJB 4OICB 4YZGA 3ZVUB 4RA2A
chains in the Genus database with same CATH superfamily

2POPA 2IRMA 3W42A 3W44A 2J4OA 3W40A 3W41A 2JFSA 2PNQA 5JO1B 2XZVA 4IIPA 4WVOB 4LGAB 5ITIA 5JO2B 3FXOA 2I44A 3KE6A 3FXJA 4IIKA 5D2UA 3NMVB 3W45A 4YZHA 2CM1A 3PU9A 2IQ1A 3W43A 4DA1A 2JFTA 3T91A 3MQ3A 4RAGA 5F1MA 3ZT9A 2Y09A 2PK0A 2J82A 3FXMA 2ISNA 2J86A 2JFRA 3ES2A 4LA7B 3UJGB 2V06A 3D8KA 3RT0A 3F79A 1TXOA 3RNRA 3KB3B 3QN1B 3FXKA 3NMTB 3NMNB 1A6QA 4JNDA 3EQ2A 2I0OA 4DS8B 3FXLA 4LGBB 2P8EA 3N3CA 4LG5B 3JRQA 3T9QA 2POMA 3UJKA 3UJLB 4N0GA 4RAFA 3KDJB 4OICB 4YZGA 3ZVUB 4RA2A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 2POP A;  2IRM A;  3W42 A;  3W44 A;  2J4O A;  3W40 A;  3W41 A;  2JFS A;  2PNQ A;  5JO1 B;  2XZV A;  4WVO B;  4LGA B;  5ITI A;  5JO2 B;  3FXO A;  2I44 A;  3KE6 A;  3FXJ A;  5D2U A;  3NMV B;  3W45 A;  4YZH A;  2CM1 A;  3PU9 A;  2IQ1 A;  3W43 A;  4DA1 A;  2JFT A;  3T91 A;  3MQ3 A;  4RAG A;  5F1M A;  3ZT9 A;  2Y09 A;  2PK0 A;  2J82 A;  3FXM A;  2ISN A;  2J86 A;  2JFR A;  3ES2 A;  4LA7 B;  3UJG B;  2V06 A;  3D8K A;  3RT0 A;  3F79 A;  1TXO A;  3RNR A;  3KB3 B;  3QN1 B;  3FXK A;  3NMT B;  3NMN B;  1A6Q A;  4JND A;  3EQ2 A;  2I0O A;  4DS8 B;  3FXL A;  4LGB B;  2P8E A;  3N3C A;  4LG5 B;  3JRQ A;  3T9Q A;  2POM A;  3UJK A;  3UJL B;  4N0G A;  4RAF A;  3KDJ B;  4OIC B;  4YZG A;  3ZVU B;  4RA2 A; 
#chains in the Genus database with same CATH topology
 2POP A;  2IRM A;  3W42 A;  3W44 A;  2J4O A;  3W40 A;  3W41 A;  2JFS A;  2PNQ A;  5JO1 B;  2XZV A;  4IIP A;  4WVO B;  4LGA B;  5ITI A;  5JO2 B;  3FXO A;  2I44 A;  3KE6 A;  3FXJ A;  4IIK A;  5D2U A;  3NMV B;  3W45 A;  4YZH A;  2CM1 A;  3PU9 A;  2IQ1 A;  3W43 A;  4DA1 A;  2JFT A;  3T91 A;  3MQ3 A;  4RAG A;  5F1M A;  3ZT9 A;  2Y09 A;  2PK0 A;  2J82 A;  3FXM A;  2ISN A;  2J86 A;  2JFR A;  3ES2 A;  4LA7 B;  3UJG B;  2V06 A;  3D8K A;  3RT0 A;  3F79 A;  1TXO A;  3RNR A;  3KB3 B;  3QN1 B;  3FXK A;  3NMT B;  3NMN B;  1A6Q A;  4JND A;  3EQ2 A;  2I0O A;  4DS8 B;  3FXL A;  4LGB B;  2P8E A;  3N3C A;  4LG5 B;  3JRQ A;  3T9Q A;  2POM A;  3UJK A;  3UJL B;  4N0G A;  4RAF A;  3KDJ B;  4OIC B;  4YZG A;  3ZVU B;  4RA2 A; 
#chains in the Genus database with same CATH homology
 2POP A;  2IRM A;  3W42 A;  3W44 A;  2J4O A;  3W40 A;  3W41 A;  2JFS A;  2PNQ A;  5JO1 B;  2XZV A;  4WVO B;  4LGA B;  5ITI A;  5JO2 B;  3FXO A;  2I44 A;  3KE6 A;  3FXJ A;  5D2U A;  3NMV B;  3W45 A;  4YZH A;  2CM1 A;  3PU9 A;  2IQ1 A;  3W43 A;  4DA1 A;  2JFT A;  3T91 A;  3MQ3 A;  4RAG A;  5F1M A;  3ZT9 A;  2Y09 A;  2PK0 A;  2J82 A;  3FXM A;  2ISN A;  2J86 A;  2JFR A;  3ES2 A;  4LA7 B;  3UJG B;  2V06 A;  3D8K A;  3RT0 A;  3F79 A;  1TXO A;  3RNR A;  3KB3 B;  3QN1 B;  3FXK A;  3NMT B;  3NMN B;  1A6Q A;  4JND A;  3EQ2 A;  2I0O A;  4DS8 B;  3FXL A;  4LGB B;  2P8E A;  3N3C A;  4LG5 B;  3JRQ A;  3T9Q A;  2POM A;  3UJK A;  3UJL B;  4N0G A;  4RAF A;  3KDJ B;  4OIC B;  4YZG A;  3ZVU B;  4RA2 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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3KB3B

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations