3M4OF

Rna polymerase ii elongation complex b
Total Genus 19
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
84
structure length
84
Chain Sequence
KAIPKDQRATTPYMTKYERARILGTRALQISMNAPVFVDLEGETDPLRIAMKELAEKKIPLVIRRYLPDGSFEDWSVEELIVDL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Transferase/dna-rna hybrid
publication title X-ray structure and mechanism of RNA polymerase II stalled at an antineoplastic monofunctional platinum-DNA adduct.
pubmed doi rcsb
molecule keywords DNA-directed RNA polymerase II subunit RPB1
total genus 19
structure length 84
sequence length 84
ec nomenclature
pdb deposition date 2010-03-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
F PF01192 RNA_pol_Rpb6 RNA polymerase Rpb6
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.940.10 Alpha Beta Alpha-Beta Complex Eukaryotic RPB6 RNA polymerase subunit Eukaryotic RPB6 RNA polymerase subunit 3m4oF00
4LJZE 5IYDF 4LK0E 3GTQF 1TWFF 3S16F 1HQME 4A3BF 5D4CE 1WCMF 1I6VE 2PPBE 4XSXE 5M5YF 4JK1E 1Y1WF 3HKZK 3RZOF 4Y7NF 2JA7F 5FJ8F 2A69E 4AYBK 4YFXE 4A3DF 2WB1I 3HOUF 4GZYE 5M5WF 4XLNE 2NVYF 5TMFE 2JA5F 2VUMF 5D4EE 3S1RF 3PO2F 4KMUE 5M5XF 1I50F 2YU9F 4BY1F 4MEXE 4C2MF 4Q5SE 1K83F 4LLGE 4XSZE 3S14F 4A93F 4YG2E 4ZH4E 2E2IF 3K7AF 3I4NF 5IP7F 2B63F 2NVTF 3S2DF 3HOYF 4BBRF 2R7ZF 4OIQE 4OIRE 4C3HF 5IYCF 5BYHE 2JA8F 1I3QF 5M3FF 4YFNE 4LK1E 4G7HE 1SMYE 4Y52F 2R93F 5C3EF 3HOZF 4A3GF 4OIPE 5M3MF 2A6HE 1TWCF 3EQLE 3H3VG 5C4JF 3GTJF 3GTPF 3M3YF 3S2HF 4MQ9E 1ZYRE 4A3LF 2O5JE 3HOXF 4KN7E 1R9TF 1TWGF 3S17F 4KN4E 2E2JF 3DXJE 3WODE 4C3IF 3CQZF 5D4DE 4A3JF 1QKLA 1TWAF 4XLPE 2R92F 4Q4ZE 1TWHF 4MEYE 3S1MF 2NVXF 2Y0SI 3M4OF 2NVQF 5IYBF 2O5IE 3I4MF 4A3KF 1SFOF 1YNJK 4X6AF 4BY7F 2A68E 4OIOE 4G7ZE 3FKIF 4BXXF 3RZDF 4A3IF 1IW7E 3PO3F 4A3CF 2WAQK 5IPLE 2E2HF 5C4XF 4A3MF 4G7OE 4YFKE 2PMZK 3S1NF 4C3JF 1YNNK 1I6HF 3GTGF 5TMCE 2CW0E 1Y1VF 4A3EF 5E17E 2A6EE 4A3FF 5IP9F 3GTKF 3GTMF 5FLMF 5C44F 3GTLF 2JA6F 4BBSF 3S1QF 3HOVF 3S15F 3GTOF 5E18E 3HOWF 4OINE 2BE5E 3H0GF
chains in the Genus database with same CATH superfamily
3S17E 4LJZE 2E2JE 5IYDF 4LK0E 4C3IE 3GTGE 3GTQF 1TWFF 3CQZE 4A3JE 3S16F 1HQME 4A3BF 1TWAE 5D4CE 1I6VE 1WCMF 2PPBE 4XSXE 1TWHE 5M5YF 2R92E 4JK1E 1Y1WF 3S1ME 2NVXE 3HKZK 3RZOF 5FLME 4Y7NF 2JA7F 5FJ8F 2A69E 4AYBK 4YFXE 5IYBE 2JA6E 2NVQE 3I4ME 4A3KE 4X6AE 4BY7E 4A3DF 3HOWE 2WB1I 3FKIE 3RZDE 3HOUF 4BXXE 4GZYE 5M5WF 4A3IE 4XLNE 2NVYF 3PO3E 5TMFE 2JA5F 2VUMF 2Y0SH 4A3CE 3S16E 5D4EE 3S1RF 3PO2F 4KMUE 5M5XF 1I50F 2YU9F 4A3BE 4BY1F 4MEXE 1WCME 5C4XE 4C2MF 4Q5SE 4A3ME 1K83F 4LLGE 4XSZE 3S1NE 4C3JE 3S14F 4A93F 1I6HE 4YG2E 4ZH4E 1Y1VE 4A3EE 4A3FE 2E2IF 5IP9E 3K7AF 3I4NF 5IP7F 2B63F 2NVTF 3GTME 3GTKE 3S2DF 3HOYF 4BBRF 2R7ZF 5C44E 4OIQE 4OIRE 3GTLE 4C3HF 5IYCF 5BYHE 4BBSE 2JA8F 3S1QE 5M5XE 1I50E 3HOVE 1I3QF 3S15E 5M3FF 4BY1E 4C2ME 4YFNE 4LK1E 4G7HE 1SMYE 4QIWH 3H0GE 4Y52F 5C3EF 3GTOE 3HOZF 4A3GF 2R93F 3S14E 4OIPE 5IYDE 2A6HE 5M3MF 1TWCF 1TWFE 3EQLE 3GTQE 3H3VG 5C4JF 3GTJF 3GTPF 2E2IE 3M3YF 3S2HF 5M5YE 1EIKA 4MQ9E 1Y1WE 2WAQH 3S2DE 3RZOE 1ZYRE 4A3LF 2O5JE 4Y7NE 2JA7E 3HOXF 4KN7E 2R7ZE 1R9TF 5FJ8E 1TWGF 3HKZH 2JA8E 3S17F 2PMZH 4KN4E 2E2JF 3DXJE 3WODE 4C3IF 4A3DE 3CQZF 5D4DE 4AYBH 4A3JF 3HOUE 1QKLA 1TWAF 5M5WE 4XLPE 2R92F 4Q4ZE 4Y52E 1TWHF 3HOZE 2NVYE 4MEYE 3S1MF 2NVXF 2JA5E 2VUME 2Y0SI 3S1RE 3PO2E 2YU9E 3M4OF 2NVQF 5IYBF 3GTPE 3S2HE 2O5IE 3I4MF 4A3KF 1K83E 1YNJK 4QIWK 1SFOF 4BY7F 2A68E 4X6AF 4OIOE 4G7ZE 2WB1H 3FKIF 3RZDF 4BXXF 4A93E 4A3IF 1TWGE 3H3VF 2KRXA 1IW7E 3PO3F 4A3CF 2WAQK 3K7AE 3I4NE 5IP7E 2B63E 2NVTE 5IPLE 2E2HF 3HOYE 5C4XF 4BBRE 4A3MF 4G7OE 5IYCE 4C3HE 4YFKE 2PMZK 3S1NF 4C3JF 1I3QE 1YNNK 1I6HF 5M3FE 3GTGF 5TMCE 3M4OE 2CW0E 1Y1VF 4A3EF 1SFOE 5E17E 2A6EE 4A3FF 5IP9F 2R93E 5C3EE 4A3GE 3GTKF 3GTMF 5M3ME 5FLMF 1TWCE 5C44F 3GTLF 5C4JE 3GTJE 3M3YE 2JA6F 4BBSF 3S1QF 3HOVF 3S15F 2E2HE 3GTOF 5E18E 3HOWF 4A3LE 1DZFA 3HOXE 4OINE 1R9TE 2BE5E 3H0GF
chains in the Genus database with same CATH topology
4LJZE 5IYDF 4LK0E 3GTQF 1TWFF 3S16F 1HQME 4A3BF 5D4CE 1WCMF 1I6VE 2PPBE 4XSXE 5M5YF 4JK1E 1Y1WF 3HKZK 3RZOF 4Y7NF 2JA7F 5FJ8F 2A69E 4AYBK 4YFXE 4A3DF 2WB1I 3HOUF 4GZYE 5M5WF 4XLNE 2NVYF 5TMFE 2JA5F 2VUMF 5D4EE 3S1RF 3PO2F 4KMUE 5M5XF 1I50F 2YU9F 4BY1F 4MEXE 4C2MF 4Q5SE 1K83F 4LLGE 4XSZE 3S14F 4A93F 4YG2E 4ZH4E 2E2IF 3K7AF 3I4NF 5IP7F 2B63F 2NVTF 3S2DF 3HOYF 4BBRF 2R7ZF 4OIQE 4OIRE 4C3HF 5IYCF 5BYHE 2JA8F 1I3QF 5M3FF 4YFNE 4LK1E 4G7HE 1SMYE 4Y52F 2R93F 5C3EF 3HOZF 4A3GF 4OIPE 5M3MF 2A6HE 1TWCF 3EQLE 3H3VG 5C4JF 3GTJF 3GTPF 3M3YF 3S2HF 4MQ9E 1ZYRE 4A3LF 2O5JE 3HOXF 4KN7E 1R9TF 1TWGF 3S17F 4KN4E 2E2JF 3DXJE 3WODE 4C3IF 3CQZF 5D4DE 4A3JF 1QKLA 1TWAF 4XLPE 2R92F 4Q4ZE 1TWHF 4MEYE 3S1MF 2NVXF 2Y0SI 3M4OF 2NVQF 5IYBF 2O5IE 3I4MF 4A3KF 4QIWK 1YNJK 1SFOF 4X6AF 4BY7F 2A68E 4OIOE 4G7ZE 3FKIF 4BXXF 3RZDF 4A3IF 2KRXA 1IW7E 3PO3F 4A3CF 2WAQK 5IPLE 2E2HF 5C4XF 4A3MF 4G7OE 4YFKE 2PMZK 3S1NF 4C3JF 1YNNK 1I6HF 3GTGF 5TMCE 2CW0E 1Y1VF 4A3EF 5E17E 2A6EE 4A3FF 5IP9F 3GTKF 3GTMF 5FLMF 5C44F 3GTLF 2JA6F 4BBSF 3S1QF 3HOVF 3S15F 3GTOF 5E18E 3HOWF 4OINE 2BE5E 3H0GF
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4LJZ E;  5IYD F;  4LK0 E;  3GTQ F;  1TWF F;  3S16 F;  1HQM E;  4A3B F;  5D4C E;  1WCM F;  1I6V E;  2PPB E;  4XSX E;  5M5Y F;  4JK1 E;  1Y1W F;  3HKZ K;  3RZO F;  4Y7N F;  2JA7 F;  5FJ8 F;  2A69 E;  4AYB K;  4YFX E;  4A3D F;  2WB1 I;  3HOU F;  4GZY E;  5M5W F;  4XLN E;  2NVY F;  5TMF E;  2JA5 F;  2VUM F;  5D4E E;  3S1R F;  3PO2 F;  4KMU E;  5M5X F;  1I50 F;  2YU9 F;  4BY1 F;  4MEX E;  4C2M F;  4Q5S E;  1K83 F;  4LLG E;  4XSZ E;  3S14 F;  4A93 F;  4YG2 E;  4ZH4 E;  2E2I F;  3K7A F;  3I4N F;  5IP7 F;  2B63 F;  2NVT F;  3S2D F;  3HOY F;  4BBR F;  2R7Z F;  4OIQ E;  4OIR E;  4C3H F;  5IYC F;  5BYH E;  2JA8 F;  1I3Q F;  5M3F F;  4YFN E;  4LK1 E;  4G7H E;  1SMY E;  4Y52 F;  2R93 F;  5C3E F;  3HOZ F;  4A3G F;  4OIP E;  5M3M F;  2A6H E;  1TWC F;  3EQL E;  3H3V G;  5C4J F;  3GTJ F;  3GTP F;  3M3Y F;  3S2H F;  4MQ9 E;  1ZYR E;  4A3L F;  2O5J E;  3HOX F;  4KN7 E;  1R9T F;  1TWG F;  3S17 F;  4KN4 E;  2E2J F;  3DXJ E;  3WOD E;  4C3I F;  3CQZ F;  5D4D E;  4A3J F;  1QKL A;  1TWA F;  4XLP E;  2R92 F;  4Q4Z E;  1TWH F;  4MEY E;  3S1M F;  2NVX F;  2Y0S I;  3M4O F;  2NVQ F;  5IYB F;  2O5I E;  3I4M F;  4A3K F;  1SFO F;  1YNJ K;  4X6A F;  4BY7 F;  2A68 E;  4OIO E;  4G7Z E;  3FKI F;  4BXX F;  3RZD F;  4A3I F;  1IW7 E;  3PO3 F;  4A3C F;  2WAQ K;  5IPL E;  2E2H F;  5C4X F;  4A3M F;  4G7O E;  4YFK E;  2PMZ K;  3S1N F;  4C3J F;  1YNN K;  1I6H F;  3GTG F;  5TMC E;  2CW0 E;  1Y1V F;  4A3E F;  5E17 E;  2A6E E;  4A3F F;  5IP9 F;  3GTK F;  3GTM F;  5FLM F;  5C44 F;  3GTL F;  2JA6 F;  4BBS F;  3S1Q F;  3HOV F;  3S15 F;  3GTO F;  5E18 E;  3HOW F;  4OIN E;  2BE5 E;  3H0G F; 
#chains in the Genus database with same CATH topology
 3S17 E;  4LJZ E;  2E2J E;  5IYD F;  4LK0 E;  4C3I E;  3GTG E;  3GTQ F;  1TWF F;  3CQZ E;  4A3J E;  3S16 F;  1HQM E;  4A3B F;  1TWA E;  5D4C E;  1I6V E;  1WCM F;  2PPB E;  4XSX E;  1TWH E;  5M5Y F;  2R92 E;  4JK1 E;  1Y1W F;  3S1M E;  2NVX E;  3HKZ K;  3RZO F;  5FLM E;  4Y7N F;  2JA7 F;  5FJ8 F;  2A69 E;  4AYB K;  4YFX E;  5IYB E;  2JA6 E;  2NVQ E;  3I4M E;  4A3K E;  4X6A E;  4BY7 E;  4A3D F;  3HOW E;  2WB1 I;  3FKI E;  3RZD E;  3HOU F;  4BXX E;  4GZY E;  5M5W F;  4A3I E;  4XLN E;  2NVY F;  3PO3 E;  5TMF E;  2JA5 F;  2VUM F;  2Y0S H;  4A3C E;  3S16 E;  5D4E E;  3S1R F;  3PO2 F;  4KMU E;  5M5X F;  1I50 F;  2YU9 F;  4A3B E;  4BY1 F;  4MEX E;  1WCM E;  5C4X E;  4C2M F;  4Q5S E;  4A3M E;  1K83 F;  4LLG E;  4XSZ E;  3S1N E;  4C3J E;  3S14 F;  4A93 F;  1I6H E;  4YG2 E;  4ZH4 E;  1Y1V E;  4A3E E;  4A3F E;  2E2I F;  5IP9 E;  3K7A F;  3I4N F;  5IP7 F;  2B63 F;  2NVT F;  3GTM E;  3GTK E;  3S2D F;  3HOY F;  4BBR F;  2R7Z F;  5C44 E;  4OIQ E;  4OIR E;  3GTL E;  4C3H F;  5IYC F;  5BYH E;  4BBS E;  2JA8 F;  3S1Q E;  5M5X E;  1I50 E;  3HOV E;  1I3Q F;  3S15 E;  5M3F F;  4BY1 E;  4C2M E;  4YFN E;  4LK1 E;  4G7H E;  1SMY E;  4QIW H;  3H0G E;  4Y52 F;  5C3E F;  3GTO E;  3HOZ F;  4A3G F;  2R93 F;  3S14 E;  4OIP E;  5IYD E;  2A6H E;  5M3M F;  1TWC F;  1TWF E;  3EQL E;  3GTQ E;  3H3V G;  5C4J F;  3GTJ F;  3GTP F;  2E2I E;  3M3Y F;  3S2H F;  5M5Y E;  1EIK A;  4MQ9 E;  1Y1W E;  2WAQ H;  3S2D E;  3RZO E;  1ZYR E;  4A3L F;  2O5J E;  4Y7N E;  2JA7 E;  3HOX F;  4KN7 E;  2R7Z E;  1R9T F;  5FJ8 E;  1TWG F;  3HKZ H;  2JA8 E;  3S17 F;  2PMZ H;  4KN4 E;  2E2J F;  3DXJ E;  3WOD E;  4C3I F;  4A3D E;  3CQZ F;  5D4D E;  4AYB H;  4A3J F;  3HOU E;  1QKL A;  1TWA F;  5M5W E;  4XLP E;  2R92 F;  4Q4Z E;  4Y52 E;  1TWH F;  3HOZ E;  2NVY E;  4MEY E;  3S1M F;  2NVX F;  2JA5 E;  2VUM E;  2Y0S I;  3S1R E;  3PO2 E;  2YU9 E;  3M4O F;  2NVQ F;  5IYB F;  3GTP E;  3S2H E;  2O5I E;  3I4M F;  4A3K F;  1K83 E;  1YNJ K;  4QIW K;  1SFO F;  4BY7 F;  2A68 E;  4X6A F;  4OIO E;  4G7Z E;  2WB1 H;  3FKI F;  3RZD F;  4BXX F;  4A93 E;  4A3I F;  1TWG E;  3H3V F;  2KRX A;  1IW7 E;  3PO3 F;  4A3C F;  2WAQ K;  3K7A E;  3I4N E;  5IP7 E;  2B63 E;  2NVT E;  5IPL E;  2E2H F;  3HOY E;  5C4X F;  4BBR E;  4A3M F;  4G7O E;  5IYC E;  4C3H E;  4YFK E;  2PMZ K;  3S1N F;  4C3J F;  1I3Q E;  1YNN K;  1I6H F;  5M3F E;  3GTG F;  5TMC E;  3M4O E;  2CW0 E;  1Y1V F;  4A3E F;  1SFO E;  5E17 E;  2A6E E;  4A3F F;  5IP9 F;  2R93 E;  5C3E E;  4A3G E;  3GTK F;  3GTM F;  5M3M E;  5FLM F;  1TWC E;  5C44 F;  3GTL F;  5C4J E;  3GTJ E;  3M3Y E;  2JA6 F;  4BBS F;  3S1Q F;  3HOV F;  3S15 F;  2E2H E;  3GTO F;  5E18 E;  3HOW F;  4A3L E;  1DZF A;  3HOX E;  4OIN E;  1R9T E;  2BE5 E;  3H0G F; 
#chains in the Genus database with same CATH homology
 4LJZ E;  5IYD F;  4LK0 E;  3GTQ F;  1TWF F;  3S16 F;  1HQM E;  4A3B F;  5D4C E;  1WCM F;  1I6V E;  2PPB E;  4XSX E;  5M5Y F;  4JK1 E;  1Y1W F;  3HKZ K;  3RZO F;  4Y7N F;  2JA7 F;  5FJ8 F;  2A69 E;  4AYB K;  4YFX E;  4A3D F;  2WB1 I;  3HOU F;  4GZY E;  5M5W F;  4XLN E;  2NVY F;  5TMF E;  2JA5 F;  2VUM F;  5D4E E;  3S1R F;  3PO2 F;  4KMU E;  5M5X F;  1I50 F;  2YU9 F;  4BY1 F;  4MEX E;  4C2M F;  4Q5S E;  1K83 F;  4LLG E;  4XSZ E;  3S14 F;  4A93 F;  4YG2 E;  4ZH4 E;  2E2I F;  3K7A F;  3I4N F;  5IP7 F;  2B63 F;  2NVT F;  3S2D F;  3HOY F;  4BBR F;  2R7Z F;  4OIQ E;  4OIR E;  4C3H F;  5IYC F;  5BYH E;  2JA8 F;  1I3Q F;  5M3F F;  4YFN E;  4LK1 E;  4G7H E;  1SMY E;  4Y52 F;  2R93 F;  5C3E F;  3HOZ F;  4A3G F;  4OIP E;  5M3M F;  2A6H E;  1TWC F;  3EQL E;  3H3V G;  5C4J F;  3GTJ F;  3GTP F;  3M3Y F;  3S2H F;  4MQ9 E;  1ZYR E;  4A3L F;  2O5J E;  3HOX F;  4KN7 E;  1R9T F;  1TWG F;  3S17 F;  4KN4 E;  2E2J F;  3DXJ E;  3WOD E;  4C3I F;  3CQZ F;  5D4D E;  4A3J F;  1QKL A;  1TWA F;  4XLP E;  2R92 F;  4Q4Z E;  1TWH F;  4MEY E;  3S1M F;  2NVX F;  2Y0S I;  3M4O F;  2NVQ F;  5IYB F;  2O5I E;  3I4M F;  4A3K F;  4QIW K;  1YNJ K;  1SFO F;  4X6A F;  4BY7 F;  2A68 E;  4OIO E;  4G7Z E;  3FKI F;  4BXX F;  3RZD F;  4A3I F;  2KRX A;  1IW7 E;  3PO3 F;  4A3C F;  2WAQ K;  5IPL E;  2E2H F;  5C4X F;  4A3M F;  4G7O E;  4YFK E;  2PMZ K;  3S1N F;  4C3J F;  1YNN K;  1I6H F;  3GTG F;  5TMC E;  2CW0 E;  1Y1V F;  4A3E F;  5E17 E;  2A6E E;  4A3F F;  5IP9 F;  3GTK F;  3GTM F;  5FLM F;  5C44 F;  3GTL F;  2JA6 F;  4BBS F;  3S1Q F;  3HOV F;  3S15 F;  3GTO F;  5E18 E;  3HOW F;  4OIN E;  2BE5 E;  3H0G F; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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