3MQ3 | Genus

Total Genus 117

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	117
sequence length	453
structure length	378
Chain Sequence	PPQVNSILKANEYSFKVPEFDGKNVSSVLGFDSNQLPANAPIEDRRSAATCLQTRGMLLGVFDGHAGCACSQAVSERLFYYIAVSLLPHETLLEIENALLPILQWHKHPNDYFSKEASKLYFNSLRTYWQELIDIDVKEALINAFKRLDNDISLEAQVGDPNSFLNYLVLRVAFSGATACVAHVDGVDLHVANTGDSRAMLGVQEEDGSWSAVTLSNDHNAQNEREVERLKLEHPKNEAKSVVKQDRLLGLLMPFRAFGDVKFKWSIDLQKRVIEKFIPPNYYTPPYLTAEPEVTYHRLRPQDKFLVLATDGLWETMHRQDVVRIVGEYLTGMQNAATHLIRHAVKMLSLPEELARMYRDDITIIVVQFNSHVVGAYQ

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 378 atoms

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378 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Hydrolase
source organism	Bos taurus
publication title	Crystal Structure of Catalytic Subunit of Bovine Pyruvate Dehydrogenase Phophatase rcsb
molecule keywords	Pyruvate dehydrogenase phosphatase 1
total genus	117
structure length	378
sequence length	453
ec nomenclature	ec 3.1.3.43: [Pyruvate dehydrogenase (acetyl-transferring)]-phosphatase.
pdb deposition date	2010-04-27

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00481	PP2C	Protein phosphatase 2C

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.60.40.10	Alpha Beta	4-Layer Sandwich	Phosphatase 2c; domain 1	PPM-type phosphatase domain	3mq3A00

3FXKA 3T9QA 3FXOA 3EQ2A 3ES2A 4N0GA 4LA7B 2PK0A 3QN1B 4RA2A 4RAFA 3F79A 3FXLA 3UJLB 2J86A 3KDJB 4DS8B 5JO2B 4YZGA 3N3CA 2I0OA 2Y09A 4WVOB 2P8EA 3W41A 5JO1B 2XZVA 4OICB 4LGBB 4YZHA 2PNQA 4RAGA 3W43A 2J4OA 3T91A 2IRMA 5F1MA 2POMA 2POPA 3KB3B 3PU9A 4LGAB 3W40A 2J82A 4JNDA 4DA1A 3UJGB 3KE6A 2JFRA 2I44A 3NMVB 3JRQA 3MQ3A 1TXOA 3RNRA 2CM1A 3ZT9A 3W44A 3W42A 3D8KA 3FXJA 3ZVUB 4LG5B 3W45A 3NMTB 2JFSA 3UJKA 2JFTA 5D2UA 1A6QA 2V06A 2IQ1A 3RT0A 3FXMA 5ITIA 3NMNB 2ISNA
chains in the Genus database with same CATH superfamily

3FXKA 3T9QA 3FXOA 3EQ2A 3ES2A 4IIKA 4N0GA 4LA7B 2PK0A 3QN1B 4RA2A 4RAFA 3F79A 3FXLA 3UJLB 2J86A 3KDJB 4DS8B 5JO2B 4YZGA 3N3CA 2I0OA 2Y09A 4WVOB 2P8EA 3W41A 5JO1B 2XZVA 4OICB 4LGBB 4YZHA 2PNQA 4RAGA 3W43A 2J4OA 3T91A 2IRMA 5F1MA 2POMA 2POPA 3KB3B 3PU9A 4LGAB 3W40A 2J82A 4JNDA 4DA1A 3UJGB 3KE6A 2JFRA 2I44A 3NMVB 3JRQA 3MQ3A 1TXOA 3RNRA 2CM1A 3ZT9A 3W44A 3W42A 3D8KA 3FXJA 3ZVUB 4LG5B 4IIPA 3W45A 3NMTB 2JFSA 3UJKA 2JFTA 5D2UA 1A6QA 2V06A 2IQ1A 3RT0A 3FXMA 5ITIA 3NMNB 2ISNA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3FXK A;  3T9Q A;  3FXO A;  3EQ2 A;  3ES2 A;  4N0G A;  4LA7 B;  2PK0 A;  3QN1 B;  4RA2 A;  4RAF A;  3F79 A;  3FXL A;  3UJL B;  2J86 A;  3KDJ B;  4DS8 B;  5JO2 B;  4YZG A;  3N3C A;  2I0O A;  2Y09 A;  4WVO B;  2P8E A;  3W41 A;  5JO1 B;  2XZV A;  4OIC B;  4LGB B;  4YZH A;  2PNQ A;  4RAG A;  3W43 A;  2J4O A;  3T91 A;  2IRM A;  5F1M A;  2POM A;  2POP A;  3KB3 B;  3PU9 A;  4LGA B;  3W40 A;  2J82 A;  4JND A;  4DA1 A;  3UJG B;  3KE6 A;  2JFR A;  2I44 A;  3NMV B;  3JRQ A;  3MQ3 A;  1TXO A;  3RNR A;  2CM1 A;  3ZT9 A;  3W44 A;  3W42 A;  3D8K A;  3FXJ A;  3ZVU B;  4LG5 B;  3W45 A;  3NMT B;  2JFS A;  3UJK A;  2JFT A;  5D2U A;  1A6Q A;  2V06 A;  2IQ1 A;  3RT0 A;  3FXM A;  5ITI A;  3NMN B;  2ISN A; 
#chains in the Genus database with same CATH topology
 3FXK A;  3T9Q A;  3FXO A;  3EQ2 A;  3ES2 A;  4IIK A;  4N0G A;  4LA7 B;  2PK0 A;  3QN1 B;  4RA2 A;  4RAF A;  3F79 A;  3FXL A;  3UJL B;  2J86 A;  3KDJ B;  4DS8 B;  5JO2 B;  4YZG A;  3N3C A;  2I0O A;  2Y09 A;  4WVO B;  2P8E A;  3W41 A;  5JO1 B;  2XZV A;  4OIC B;  4LGB B;  4YZH A;  2PNQ A;  4RAG A;  3W43 A;  2J4O A;  3T91 A;  2IRM A;  5F1M A;  2POM A;  2POP A;  3KB3 B;  3PU9 A;  4LGA B;  3W40 A;  2J82 A;  4JND A;  4DA1 A;  3UJG B;  3KE6 A;  2JFR A;  2I44 A;  3NMV B;  3JRQ A;  3MQ3 A;  1TXO A;  3RNR A;  2CM1 A;  3ZT9 A;  3W44 A;  3W42 A;  3D8K A;  3FXJ A;  3ZVU B;  4LG5 B;  4IIP A;  3W45 A;  3NMT B;  2JFS A;  3UJK A;  2JFT A;  5D2U A;  1A6Q A;  2V06 A;  2IQ1 A;  3RT0 A;  3FXM A;  5ITI A;  3NMN B;  2ISN A; 
#chains in the Genus database with same CATH homology
 3FXK A;  3T9Q A;  3FXO A;  3EQ2 A;  3ES2 A;  4N0G A;  4LA7 B;  2PK0 A;  3QN1 B;  4RA2 A;  4RAF A;  3F79 A;  3FXL A;  3UJL B;  2J86 A;  3KDJ B;  4DS8 B;  5JO2 B;  4YZG A;  3N3C A;  2I0O A;  2Y09 A;  4WVO B;  2P8E A;  3W41 A;  5JO1 B;  2XZV A;  4OIC B;  4LGB B;  4YZH A;  2PNQ A;  4RAG A;  3W43 A;  2J4O A;  3T91 A;  2IRM A;  5F1M A;  2POM A;  2POP A;  3KB3 B;  3PU9 A;  4LGA B;  3W40 A;  2J82 A;  4JND A;  4DA1 A;  3UJG B;  3KE6 A;  2JFR A;  2I44 A;  3NMV B;  3JRQ A;  3MQ3 A;  1TXO A;  3RNR A;  2CM1 A;  3ZT9 A;  3W44 A;  3W42 A;  3D8K A;  3FXJ A;  3ZVU B;  4LG5 B;  3W45 A;  3NMT B;  2JFS A;  3UJK A;  2JFT A;  5D2U A;  1A6Q A;  2V06 A;  2IQ1 A;  3RT0 A;  3FXM A;  5ITI A;  3NMN B;  2ISN A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3MQ3A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations