3NIKA

The structure of ubr box (reaa)
Total Genus 18

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
18
sequence length
82
structure length
82
Chain Sequence
GSVHKHTGRNCGRKFKIGEPLYRCHECGCDDTCVLCIHCFNPKDHVNHHVCTDICTEFTSGICDCGDEEAWNSPLHCKAEEQ

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Structural basis for the recognition of N-end rule substrates by the UBR box of ubiquitin ligases
pubmed doi rcsb
molecule keywords E3 ubiquitin-protein ligase UBR1
molecule tags Metal binding protein
source organism Saccharomyces cerevisiae
total genus 18
structure length 82
sequence length 82
chains with identical sequence B, D, F
ec nomenclature ec 2.3.2.27: RING-type E3 ubiquitin transferase.
pdb deposition date 2010-06-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02207 zf-UBR Putative zinc finger in N-recognin (UBR box)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.110.30 Mainly Beta Ribbon Cysteine Rich Protein Cysteine Rich Protein 3nikA01
3NILA 3NIHA 3NIKA 3NIMA 3NISA 3NIJA 3NINA
chains in the Genus database with same CATH superfamily
2XUEA 1IBIA 1X4LA 3AVSA 1B8TA 1IMLA 2CURA 4UF0A 2D8XA 4UF0B 1QLIA 2XQNT 1V6GA 5FP3A 3NISA 2L6YB 2LZUA 5FXZA 4JCJA 1U5SB 2DJ7A 2CUQA 2JTNA 5A1LA 1J2OA 2D8ZA 5FXVA 2DFYC 3ZPOA 3NILA 2MBVA 3NIHA 1X61A 2IYBE 1X68A 5FY7A 2DLOA 3IXEB 4ASKA 1X62A 2O13A 4HI9B 1CTLA 2LXDA 3MMKA 4EZ4A 2O10A 2D8YA 3ZLIA 5LKTA 2CU8A 1WYHA 1RUTX 3AVRA 2XJYA 4EZHA 5LKXA 4BHWA 2MIUA 1G47A 1A7IA 2CORA 1CXXA 3NINA 5FY0A 2KBXB 2L6ZC 2EHEA 3NIJA 2DARA 1X63A 5FXWA 3NIMA 4KFZA 4HI8B 1NYPA 1X64A 1M3VA 2YPAC 1X6AA 5FXXA 5LKZA 5FY1A 1WIGA 2XJZA 2CO8A 3F6QB 5LKUA 5FYMA 2CUPA 2L4ZA 1X3HA 3NIKA 4EYUA 2EGQA
chains in the Genus database with same CATH topology
2XUEA 1IBIA 1X4LA 3AVSA 1B8TA 1IMLA 2CURA 4UF0A 2D8XA 4UF0B 1QLIA 2XQNT 1V6GA 5FP3A 3NISA 2L6YB 2LZUA 5FXZA 4JCJA 1U5SB 2DJ7A 2CUQA 2JTNA 5A1LA 1J2OA 2D8ZA 5FXVA 2DFYC 3ZPOA 3NILA 2MBVA 3NIHA 1X61A 2IYBE 1X68A 5FY7A 2DLOA 3IXEB 4ASKA 1X62A 2O13A 4HI9B 1CTLA 2LXDA 3MMKA 4EZ4A 2O10A 2D8YA 3ZLIA 5LKTA 2CU8A 1WYHA 1RUTX 3AVRA 2XJYA 4EZHA 5LKXA 4BHWA 2MIUA 1G47A 1A7IA 2CORA 1CXXA 3NINA 5FY0A 2KBXB 2L6ZC 2EHEA 3NIJA 2DARA 1X63A 5FXWA 3NIMA 4KFZA 4HI8B 1NYPA 1X64A 1M3VA 2YPAC 1X6AA 5FXXA 5LKZA 5FY1A 1WIGA 2XJZA 2CO8A 3F6QB 5LKUA 5FYMA 2CUPA 2L4ZA 1X3HA 3NIKA 4EYUA 2EGQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3NIL A;  3NIH A;  3NIK A;  3NIM A;  3NIS A;  3NIJ A;  3NIN A; 
#chains in the Genus database with same CATH topology
 2XUE A;  1IBI A;  1X4L A;  3AVS A;  1B8T A;  1IML A;  2CUR A;  4UF0 A;  2D8X A;  4UF0 B;  1QLI A;  2XQN T;  1V6G A;  5FP3 A;  3NIS A;  2L6Y B;  2LZU A;  5FXZ A;  4JCJ A;  1U5S B;  2DJ7 A;  2CUQ A;  2JTN A;  5A1L A;  1J2O A;  2D8Z A;  5FXV A;  2DFY C;  3ZPO A;  3NIL A;  2MBV A;  3NIH A;  1X61 A;  2IYB E;  1X68 A;  5FY7 A;  2DLO A;  3IXE B;  4ASK A;  1X62 A;  2O13 A;  4HI9 B;  1CTL A;  2LXD A;  3MMK A;  4EZ4 A;  2O10 A;  2D8Y A;  3ZLI A;  5LKT A;  2CU8 A;  1WYH A;  1RUT X;  3AVR A;  2XJY A;  4EZH A;  5LKX A;  4BHW A;  2MIU A;  1G47 A;  1A7I A;  2COR A;  1CXX A;  3NIN A;  5FY0 A;  2KBX B;  2L6Z C;  2EHE A;  3NIJ A;  2DAR A;  1X63 A;  5FXW A;  3NIM A;  4KFZ A;  4HI8 B;  1NYP A;  1X64 A;  1M3V A;  2YPA C;  1X6A A;  5FXX A;  5LKZ A;  5FY1 A;  1WIG A;  2XJZ A;  2CO8 A;  3F6Q B;  5LKU A;  5FYM A;  2CUP A;  2L4Z A;  1X3H A;  3NIK A;  4EYU A;  2EGQ A; 
#chains in the Genus database with same CATH homology
 2XUE A;  1IBI A;  1X4L A;  3AVS A;  1B8T A;  1IML A;  2CUR A;  4UF0 A;  2D8X A;  4UF0 B;  1QLI A;  2XQN T;  1V6G A;  5FP3 A;  3NIS A;  2L6Y B;  2LZU A;  5FXZ A;  4JCJ A;  1U5S B;  2DJ7 A;  2CUQ A;  2JTN A;  5A1L A;  1J2O A;  2D8Z A;  5FXV A;  2DFY C;  3ZPO A;  3NIL A;  2MBV A;  3NIH A;  1X61 A;  2IYB E;  1X68 A;  5FY7 A;  2DLO A;  3IXE B;  4ASK A;  1X62 A;  2O13 A;  4HI9 B;  1CTL A;  2LXD A;  3MMK A;  4EZ4 A;  2O10 A;  2D8Y A;  3ZLI A;  5LKT A;  2CU8 A;  1WYH A;  1RUT X;  3AVR A;  2XJY A;  4EZH A;  5LKX A;  4BHW A;  2MIU A;  1G47 A;  1A7I A;  2COR A;  1CXX A;  3NIN A;  5FY0 A;  2KBX B;  2L6Z C;  2EHE A;  3NIJ A;  2DAR A;  1X63 A;  5FXW A;  3NIM A;  4KFZ A;  4HI8 B;  1NYP A;  1X64 A;  1M3V A;  2YPA C;  1X6A A;  5FXX A;  5LKZ A;  5FY1 A;  1WIG A;  2XJZ A;  2CO8 A;  3F6Q B;  5LKU A;  5FYM A;  2CUP A;  2L4Z A;  1X3H A;  3NIK A;  4EYU A;  2EGQ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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