3NINA

The structure of ubr box (rlges)
Total Genus 16

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
16
sequence length
80
structure length
80
Chain Sequence
VHKHTGRNCGRKFKIGEPLYRCHECGCDDTCVLCIHCFNPKDHVNHHVCTDICTEFTSGICDCGDEEAWNSPLHCKAEEQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Metal binding protein
source organism Saccharomyces cerevisiae
publication title Structural basis for the recognition of N-end rule substrates by the UBR box of ubiquitin ligases
pubmed doi rcsb
molecule keywords E3 ubiquitin-protein ligase UBR1
total genus 16
structure length 80
sequence length 80
chains with identical sequence B
ec nomenclature ec 2.3.2.27: RING-type E3 ubiquitin transferase.
pdb deposition date 2010-06-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02207 zf-UBR Putative zinc finger in N-recognin (UBR box)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.110.30 Mainly Beta Ribbon Cysteine Rich Protein Cysteine Rich Protein 3ninA01
3NILA 3NIHA 3NIMA 3NIJA 3NISA 3NINA 3NIKA
chains in the Genus database with same CATH superfamily
1G47A 1M3VA 2DLOA 4JCJA 3NIHA 1A7IA 1X61A 4UF0B 5FY0A 3AVRA 4EZHA 3MMKA 2MIUA 1X62A 2XJZA 5A1LA 3ZLIA 2CUQA 1X6AA 1X3HA 2EHEA 5FXZA 2MBVA 5FXVA 3NILA 2O13A 1U5SB 1X4LA 2D8XA 2CO8A 2DARA 5LKXA 5FXXA 5LKUA 2KBXB 1NYPA 2YPAC 3NISA 1WIGA 1V6GA 4EYUA 2JTNA 2CU8A 4HI9B 1RUTX 3NIMA 3NIJA 5FYMA 2L6YB 3IXEB 1WYHA 1J2OA 5FP3A 2L4ZA 2LXDA 2XQNT 4HI8B 1X64A 4UF0A 5FXWA 5LKZA 2IYBE 4BHWA 2DFYC 1IBIA 2DJ7A 3F6QB 3AVSA 2XUEA 4EZ4A 1X63A 5FY1A 2CUPA 1IMLA 3NINA 2O10A 2CORA 1CXXA 4ASKA 2L6ZC 3NIKA 5FY7A 1B8TA 3ZPOA 2D8ZA 2EGQA 2D8YA 2XJYA 1X68A 2CURA 4KFZA 5LKTA 2LZUA 1CTLA 1QLIA
chains in the Genus database with same CATH topology
1G47A 1M3VA 2DLOA 4JCJA 3NIHA 1A7IA 1X61A 4UF0B 5FY0A 3AVRA 4EZHA 3MMKA 2MIUA 1X62A 2XJZA 5A1LA 3ZLIA 2CUQA 1X6AA 1X3HA 2EHEA 5FXZA 2MBVA 5FXVA 3NILA 2O13A 1U5SB 1X4LA 2D8XA 2CO8A 2DARA 5LKXA 5FXXA 5LKUA 2KBXB 1NYPA 2YPAC 3NISA 1WIGA 1V6GA 4EYUA 2JTNA 2CU8A 4HI9B 1RUTX 3NIMA 3NIJA 5FYMA 2L6YB 3IXEB 1WYHA 1J2OA 5FP3A 2L4ZA 2LXDA 2XQNT 4HI8B 1X64A 4UF0A 5FXWA 5LKZA 2IYBE 4BHWA 2DFYC 1IBIA 2DJ7A 3F6QB 3AVSA 2XUEA 4EZ4A 1X63A 5FY1A 2CUPA 1IMLA 3NINA 2O10A 2CORA 1CXXA 4ASKA 2L6ZC 3NIKA 5FY7A 1B8TA 3ZPOA 2D8ZA 2EGQA 2D8YA 2XJYA 1X68A 2CURA 4KFZA 5LKTA 2LZUA 1CTLA 1QLIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3NIL A;  3NIH A;  3NIM A;  3NIJ A;  3NIS A;  3NIN A;  3NIK A; 
#chains in the Genus database with same CATH topology
 1G47 A;  1M3V A;  2DLO A;  4JCJ A;  3NIH A;  1A7I A;  1X61 A;  4UF0 B;  5FY0 A;  3AVR A;  4EZH A;  3MMK A;  2MIU A;  1X62 A;  2XJZ A;  5A1L A;  3ZLI A;  2CUQ A;  1X6A A;  1X3H A;  2EHE A;  5FXZ A;  2MBV A;  5FXV A;  3NIL A;  2O13 A;  1U5S B;  1X4L A;  2D8X A;  2CO8 A;  2DAR A;  5LKX A;  5FXX A;  5LKU A;  2KBX B;  1NYP A;  2YPA C;  3NIS A;  1WIG A;  1V6G A;  4EYU A;  2JTN A;  2CU8 A;  4HI9 B;  1RUT X;  3NIM A;  3NIJ A;  5FYM A;  2L6Y B;  3IXE B;  1WYH A;  1J2O A;  5FP3 A;  2L4Z A;  2LXD A;  2XQN T;  4HI8 B;  1X64 A;  4UF0 A;  5FXW A;  5LKZ A;  2IYB E;  4BHW A;  2DFY C;  1IBI A;  2DJ7 A;  3F6Q B;  3AVS A;  2XUE A;  4EZ4 A;  1X63 A;  5FY1 A;  2CUP A;  1IML A;  3NIN A;  2O10 A;  2COR A;  1CXX A;  4ASK A;  2L6Z C;  3NIK A;  5FY7 A;  1B8T A;  3ZPO A;  2D8Z A;  2EGQ A;  2D8Y A;  2XJY A;  1X68 A;  2CUR A;  4KFZ A;  5LKT A;  2LZU A;  1CTL A;  1QLI A; 
#chains in the Genus database with same CATH homology
 1G47 A;  1M3V A;  2DLO A;  4JCJ A;  3NIH A;  1A7I A;  1X61 A;  4UF0 B;  5FY0 A;  3AVR A;  4EZH A;  3MMK A;  2MIU A;  1X62 A;  2XJZ A;  5A1L A;  3ZLI A;  2CUQ A;  1X6A A;  1X3H A;  2EHE A;  5FXZ A;  2MBV A;  5FXV A;  3NIL A;  2O13 A;  1U5S B;  1X4L A;  2D8X A;  2CO8 A;  2DAR A;  5LKX A;  5FXX A;  5LKU A;  2KBX B;  1NYP A;  2YPA C;  3NIS A;  1WIG A;  1V6G A;  4EYU A;  2JTN A;  2CU8 A;  4HI9 B;  1RUT X;  3NIM A;  3NIJ A;  5FYM A;  2L6Y B;  3IXE B;  1WYH A;  1J2O A;  5FP3 A;  2L4Z A;  2LXD A;  2XQN T;  4HI8 B;  1X64 A;  4UF0 A;  5FXW A;  5LKZ A;  2IYB E;  4BHW A;  2DFY C;  1IBI A;  2DJ7 A;  3F6Q B;  3AVS A;  2XUE A;  4EZ4 A;  1X63 A;  5FY1 A;  2CUP A;  1IML A;  3NIN A;  2O10 A;  2COR A;  1CXX A;  4ASK A;  2L6Z C;  3NIK A;  5FY7 A;  1B8T A;  3ZPO A;  2D8Z A;  2EGQ A;  2D8Y A;  2XJY A;  1X68 A;  2CUR A;  4KFZ A;  5LKT A;  2LZU A;  1CTL A;  1QLI A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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