3NISA

The structure of ubr box (native2)
Total Genus 15

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
15
sequence length
82
structure length
82
Chain Sequence
GSVHKHTGRNCGRKFKIGEPLYRCHECGCDDTCVLCIHCFNPKDHVNHHVCTDICTEFTSGICDCGDEEAWNSPLHCKAEEQ

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Structural basis for the recognition of N-end rule substrates by the UBR box of ubiquitin ligases
pubmed doi rcsb
molecule keywords E3 ubiquitin-protein ligase UBR1
molecule tags Metal binding protein
source organism Saccharomyces cerevisiae
total genus 15
structure length 82
sequence length 82
chains with identical sequence B, D, F
ec nomenclature ec 2.3.2.27: RING-type E3 ubiquitin transferase.
pdb deposition date 2010-06-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02207 zf-UBR Putative zinc finger in N-recognin (UBR box)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.110.30 Mainly Beta Ribbon Cysteine Rich Protein Cysteine Rich Protein 3nisA01
3NIJA 3NISA 3NIMA 3NIHA 3NINA 3NIKA 3NILA
chains in the Genus database with same CATH superfamily
5FYMA 2YPAC 4HI9B 2EHEA 4UF0A 3NIHA 3NIKA 2XJZA 2D8XA 1NYPA 5FXXA 1X6AA 5FXZA 2CORA 1X64A 2IYBE 1X61A 5FXWA 1X63A 3AVRA 1X4LA 1X68A 2MIUA 5FP3A 2O13A 1M3VA 3NISA 5LKZA 2LXDA 2CU8A 1IBIA 2CURA 5LKTA 1WYHA 1RUTX 1CTLA 3ZLIA 5FY1A 2O10A 2DJ7A 1G47A 3NIJA 3F6QB 1IMLA 3IXEB 3ZPOA 1X3HA 2KBXB 4ASKA 1X62A 5A1LA 5FY0A 4HI8B 2CO8A 3NILA 4UF0B 1B8TA 2CUQA 2DFYC 5FXVA 1A7IA 3NINA 2L6YB 2JTNA 4KFZA 2LZUA 5FY7A 2D8YA 1V6GA 1J2OA 2DLOA 2XQNT 4BHWA 2EGQA 5LKUA 2L6ZC 1WIGA 3AVSA 4JCJA 2XJYA 4EZHA 2D8ZA 1U5SB 2CUPA 3MMKA 3NIMA 2MBVA 1QLIA 5LKXA 2L4ZA 2XUEA 4EZ4A 4EYUA 1CXXA 2DARA
chains in the Genus database with same CATH topology
5FYMA 2YPAC 4HI9B 2EHEA 4UF0A 3NIHA 3NIKA 2XJZA 2D8XA 1NYPA 5FXXA 1X6AA 5FXZA 2CORA 1X64A 2IYBE 1X61A 5FXWA 1X63A 3AVRA 1X4LA 1X68A 2MIUA 5FP3A 2O13A 1M3VA 3NISA 5LKZA 2LXDA 2CU8A 1IBIA 2CURA 5LKTA 1WYHA 1RUTX 1CTLA 3ZLIA 5FY1A 2O10A 2DJ7A 1G47A 3NIJA 3F6QB 1IMLA 3IXEB 3ZPOA 1X3HA 2KBXB 4ASKA 1X62A 5A1LA 5FY0A 4HI8B 2CO8A 3NILA 4UF0B 1B8TA 2CUQA 2DFYC 5FXVA 1A7IA 3NINA 2L6YB 2JTNA 4KFZA 2LZUA 5FY7A 2D8YA 1V6GA 1J2OA 2DLOA 2XQNT 4BHWA 2EGQA 5LKUA 2L6ZC 1WIGA 3AVSA 4JCJA 2XJYA 4EZHA 2D8ZA 1U5SB 2CUPA 3MMKA 3NIMA 2MBVA 1QLIA 5LKXA 2L4ZA 2XUEA 4EZ4A 4EYUA 1CXXA 2DARA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3NIJ A;  3NIS A;  3NIM A;  3NIH A;  3NIN A;  3NIK A;  3NIL A; 
#chains in the Genus database with same CATH topology
 5FYM A;  2YPA C;  4HI9 B;  2EHE A;  4UF0 A;  3NIH A;  3NIK A;  2XJZ A;  2D8X A;  1NYP A;  5FXX A;  1X6A A;  5FXZ A;  2COR A;  1X64 A;  2IYB E;  1X61 A;  5FXW A;  1X63 A;  3AVR A;  1X4L A;  1X68 A;  2MIU A;  5FP3 A;  2O13 A;  1M3V A;  3NIS A;  5LKZ A;  2LXD A;  2CU8 A;  1IBI A;  2CUR A;  5LKT A;  1WYH A;  1RUT X;  1CTL A;  3ZLI A;  5FY1 A;  2O10 A;  2DJ7 A;  1G47 A;  3NIJ A;  3F6Q B;  1IML A;  3IXE B;  3ZPO A;  1X3H A;  2KBX B;  4ASK A;  1X62 A;  5A1L A;  5FY0 A;  4HI8 B;  2CO8 A;  3NIL A;  4UF0 B;  1B8T A;  2CUQ A;  2DFY C;  5FXV A;  1A7I A;  3NIN A;  2L6Y B;  2JTN A;  4KFZ A;  2LZU A;  5FY7 A;  2D8Y A;  1V6G A;  1J2O A;  2DLO A;  2XQN T;  4BHW A;  2EGQ A;  5LKU A;  2L6Z C;  1WIG A;  3AVS A;  4JCJ A;  2XJY A;  4EZH A;  2D8Z A;  1U5S B;  2CUP A;  3MMK A;  3NIM A;  2MBV A;  1QLI A;  5LKX A;  2L4Z A;  2XUE A;  4EZ4 A;  4EYU A;  1CXX A;  2DAR A; 
#chains in the Genus database with same CATH homology
 5FYM A;  2YPA C;  4HI9 B;  2EHE A;  4UF0 A;  3NIH A;  3NIK A;  2XJZ A;  2D8X A;  1NYP A;  5FXX A;  1X6A A;  5FXZ A;  2COR A;  1X64 A;  2IYB E;  1X61 A;  5FXW A;  1X63 A;  3AVR A;  1X4L A;  1X68 A;  2MIU A;  5FP3 A;  2O13 A;  1M3V A;  3NIS A;  5LKZ A;  2LXD A;  2CU8 A;  1IBI A;  2CUR A;  5LKT A;  1WYH A;  1RUT X;  1CTL A;  3ZLI A;  5FY1 A;  2O10 A;  2DJ7 A;  1G47 A;  3NIJ A;  3F6Q B;  1IML A;  3IXE B;  3ZPO A;  1X3H A;  2KBX B;  4ASK A;  1X62 A;  5A1L A;  5FY0 A;  4HI8 B;  2CO8 A;  3NIL A;  4UF0 B;  1B8T A;  2CUQ A;  2DFY C;  5FXV A;  1A7I A;  3NIN A;  2L6Y B;  2JTN A;  4KFZ A;  2LZU A;  5FY7 A;  2D8Y A;  1V6G A;  1J2O A;  2DLO A;  2XQN T;  4BHW A;  2EGQ A;  5LKU A;  2L6Z C;  1WIG A;  3AVS A;  4JCJ A;  2XJY A;  4EZH A;  2D8Z A;  1U5S B;  2CUP A;  3MMK A;  3NIM A;  2MBV A;  1QLI A;  5LKX A;  2L4Z A;  2XUE A;  4EZ4 A;  4EYU A;  1CXX A;  2DAR A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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