3OEIA

Crystal structure of mycobacterium tuberculosis reljk (rv3357-rv3358-relbe3)
Total Genus 27
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
87
structure length
87
Chain Sequence
SISASEARQRLFPLIEQVNTDHQPVRITSRAGDAVLMSADDYDAWQETVYLLRSPENARRLMEAVARDKAGHSAFTKSVDELREMAG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of Mycobacterium tuberculosis RelJK (Rv3357-Rv3358-RelBE3)
rcsb
molecule tags Toxin, protein binding
source organism Mycobacterium tuberculosis
molecule keywords RelJ (Antitoxin Rv3357)
total genus 27
structure length 87
sequence length 87
chains with identical sequence B, I, J, M, N
ec nomenclature
pdb deposition date 2010-08-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02604 PhdYeFM_antitox Antitoxin Phd_YefM, type II toxin-antitoxin system
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1620.10 Alpha Beta 3-Layer(aba) Sandwich YefM-like fold YefM-like domain 3oeiA01
3CTOA 3OEIE 4ZM0A 4ZM2A 3G5OA 3KH2E 2ODKA 3D55A 4ZLXA 3HS2A 3K33B 2A6QA 3HRYA 3K6QA 3OEIA
chains in the Genus database with same CATH superfamily
5C5PC 4UVPB 4HLFC 4L32C 4ZM0A 4L2GC 3HJ6A 3HS2A 3K33B 4UI3C 4UI5C 4HKNC 4L0IC 3KH2E 3K6QA 4UI4C 3OEIE 4HL5C 4KZUC 4L34C 4L31C 2ODKA 4UI7C 4L0TC 3HRYA 4HLGC 4L0VC 3CTOA 4HLMC 4HLKC 4L33C 4L0BC 4UI6C 4UI8C 5FPFC 3G5OA 4HKKB 5C5RC 4ZLXA 4L10C 5ADQB 5ADSB 4HMHC 4L09C 4KZQC 5ADTB 4ZM2A 5C5QC 4L2FC 5ADRB 4HLHC 4HKIC 3D55A 2ZIXB 2A6QA 4L0SC 4KZLC 4L2KC 3OEIA
chains in the Genus database with same CATH topology
3CTOA 3OEIE 4ZM0A 4ZM2A 3G5OA 3KH2E 2ODKA 3D55A 4ZLXA 3HS2A 3K33B 2A6QA 3HRYA 3K6QA 3OEIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3CTO A;  3OEI E;  4ZM0 A;  4ZM2 A;  3G5O A;  3KH2 E;  2ODK A;  3D55 A;  4ZLX A;  3HS2 A;  3K33 B;  2A6Q A;  3HRY A;  3K6Q A;  3OEI A; 
#chains in the Genus database with same CATH topology
 5C5P C;  4UVP B;  4HLF C;  4L32 C;  4ZM0 A;  4L2G C;  3HJ6 A;  3HS2 A;  3K33 B;  4UI3 C;  4UI5 C;  4HKN C;  4L0I C;  3KH2 E;  3K6Q A;  4UI4 C;  3OEI E;  4HL5 C;  4KZU C;  4L34 C;  4L31 C;  2ODK A;  4UI7 C;  4L0T C;  3HRY A;  4HLG C;  4L0V C;  3CTO A;  4HLM C;  4HLK C;  4L33 C;  4L0B C;  4UI6 C;  4UI8 C;  5FPF C;  3G5O A;  4HKK B;  5C5R C;  4ZLX A;  4L10 C;  5ADQ B;  5ADS B;  4HMH C;  4L09 C;  4KZQ C;  5ADT B;  4ZM2 A;  5C5Q C;  4L2F C;  5ADR B;  4HLH C;  4HKI C;  3D55 A;  2ZIX B;  2A6Q A;  4L0S C;  4KZL C;  4L2K C;  3OEI A; 
#chains in the Genus database with same CATH homology
 3CTO A;  3OEI E;  4ZM0 A;  4ZM2 A;  3G5O A;  3KH2 E;  2ODK A;  3D55 A;  4ZLX A;  3HS2 A;  3K33 B;  2A6Q A;  3HRY A;  3K6Q A;  3OEI A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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