3OEIE

Crystal structure of mycobacterium tuberculosis reljk (rv3357-rv3358-relbe3)
Total Genus 22
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
22
sequence length
86
structure length
81
Chain Sequence
SISASEARQRLFPLIEQVNTDHQPVRITSRAGDAVLMSADDYDAWQETVYLLRSPENARRLMEAVARDAFTKSVDELREMA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of Mycobacterium tuberculosis RelJK (Rv3357-Rv3358-RelBE3)
rcsb
molecule tags Toxin, protein binding
source organism Mycobacterium tuberculosis
molecule keywords RelJ (Antitoxin Rv3357)
total genus 22
structure length 81
sequence length 86
chains with identical sequence F
ec nomenclature
pdb deposition date 2010-08-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
E PF02604 PhdYeFM_antitox Antitoxin Phd_YefM, type II toxin-antitoxin system
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1620.10 Alpha Beta 3-Layer(aba) Sandwich YefM-like fold YefM-like domain 3oeiE01
3KH2E 4ZM0A 3G5OA 3OEIA 4ZLXA 3HS2A 2A6QA 3K6QA 3HRYA 3CTOA 3OEIE 4ZM2A 3K33B 3D55A 2ODKA
chains in the Genus database with same CATH superfamily
4L34C 4KZQC 4L10C 2ZIXB 5C5RC 5FPFC 3HS2A 3OEIE 4KZLC 3HRYA 5ADTB 5C5PC 5C5QC 4L09C 4L2KC 2A6QA 4L0VC 4L2FC 3KH2E 4UI4C 4UI5C 5ADQB 3G5OA 3CTOA 4L32C 4ZM2A 5ADSB 3K6QA 3D55A 4UI7C 4HLHC 4HLGC 4HMHC 4HLFC 4L0TC 3HJ6A 3OEIA 4HLMC 4HKIC 4L0BC 4L0IC 4L31C 4L0SC 4UI3C 4UI8C 4HLKC 4KZUC 4HKKB 4HKNC 4UI6C 5ADRB 4L2GC 4UVPB 4ZM0A 4ZLXA 4L33C 3K33B 4HL5C 2ODKA
chains in the Genus database with same CATH topology
3KH2E 4ZM0A 3G5OA 3OEIA 4ZLXA 3HS2A 2A6QA 3K6QA 3HRYA 3CTOA 3OEIE 4ZM2A 3K33B 3D55A 2ODKA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3KH2 E;  4ZM0 A;  3G5O A;  3OEI A;  4ZLX A;  3HS2 A;  2A6Q A;  3K6Q A;  3HRY A;  3CTO A;  3OEI E;  4ZM2 A;  3K33 B;  3D55 A;  2ODK A; 
#chains in the Genus database with same CATH topology
 4L34 C;  4KZQ C;  4L10 C;  2ZIX B;  5C5R C;  5FPF C;  3HS2 A;  3OEI E;  4KZL C;  3HRY A;  5ADT B;  5C5P C;  5C5Q C;  4L09 C;  4L2K C;  2A6Q A;  4L0V C;  4L2F C;  3KH2 E;  4UI4 C;  4UI5 C;  5ADQ B;  3G5O A;  3CTO A;  4L32 C;  4ZM2 A;  5ADS B;  3K6Q A;  3D55 A;  4UI7 C;  4HLH C;  4HLG C;  4HMH C;  4HLF C;  4L0T C;  3HJ6 A;  3OEI A;  4HLM C;  4HKI C;  4L0B C;  4L0I C;  4L31 C;  4L0S C;  4UI3 C;  4UI8 C;  4HLK C;  4KZU C;  4HKK B;  4HKN C;  4UI6 C;  5ADR B;  4L2G C;  4UVP B;  4ZM0 A;  4ZLX A;  4L33 C;  3K33 B;  4HL5 C;  2ODK A; 
#chains in the Genus database with same CATH homology
 3KH2 E;  4ZM0 A;  3G5O A;  3OEI A;  4ZLX A;  3HS2 A;  2A6Q A;  3K6Q A;  3HRY A;  3CTO A;  3OEI E;  4ZM2 A;  3K33 B;  3D55 A;  2ODK A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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