3OEIE

Crystal structure of mycobacterium tuberculosis reljk (rv3357-rv3358-relbe3)
Total Genus 22
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
22
sequence length
86
structure length
81
Chain Sequence
SISASEARQRLFPLIEQVNTDHQPVRITSRAGDAVLMSADDYDAWQETVYLLRSPENARRLMEAVARDAFTKSVDELREMA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of Mycobacterium tuberculosis RelJK (Rv3357-Rv3358-RelBE3)
rcsb
molecule tags Toxin, protein binding
source organism Mycobacterium tuberculosis
molecule keywords RelJ (Antitoxin Rv3357)
total genus 22
structure length 81
sequence length 86
chains with identical sequence F
ec nomenclature
pdb deposition date 2010-08-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
E PF02604 PhdYeFM_antitox Antitoxin Phd_YefM, type II toxin-antitoxin system
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1620.10 Alpha Beta 3-Layer(aba) Sandwich YefM-like fold YefM-like domain 3oeiE01
3OEIE 3CTOA 3KH2E 3D55A 3HRYA 2ODKA 2A6QA 3K33B 4ZLXA 4ZM0A 4ZM2A 3OEIA 3G5OA 3K6QA 3HS2A
chains in the Genus database with same CATH superfamily
4L0TC 4UI4C 5C5RC 4KZQC 4HLKC 2A6QA 4HLHC 4HKNC 4L09C 4L2KC 2ZIXB 4L33C 4L10C 4UI5C 4ZM2A 4HLGC 3OEIE 3G5OA 3HS2A 4UVPB 5ADSB 3D55A 2ODKA 4L2FC 4L0BC 4L0VC 4L0SC 4UI3C 5ADTB 4ZLXA 4KZLC 4KZUC 3OEIA 4ZM0A 4L0IC 3CTOA 4UI6C 4HL5C 3KH2E 4L34C 4L2GC 4HLFC 3HJ6A 4HKKB 4HLMC 4UI7C 5C5PC 5ADQB 4L31C 4UI8C 4HMHC 5ADRB 3HRYA 5C5QC 4HKIC 4L32C 5FPFC 3K6QA 3K33B
chains in the Genus database with same CATH topology
3OEIE 3CTOA 3KH2E 3D55A 3HRYA 2ODKA 2A6QA 3K33B 4ZLXA 4ZM0A 4ZM2A 3OEIA 3G5OA 3K6QA 3HS2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3OEI E;  3CTO A;  3KH2 E;  3D55 A;  3HRY A;  2ODK A;  2A6Q A;  3K33 B;  4ZLX A;  4ZM0 A;  4ZM2 A;  3OEI A;  3G5O A;  3K6Q A;  3HS2 A; 
#chains in the Genus database with same CATH topology
 4L0T C;  4UI4 C;  5C5R C;  4KZQ C;  4HLK C;  2A6Q A;  4HLH C;  4HKN C;  4L09 C;  4L2K C;  2ZIX B;  4L33 C;  4L10 C;  4UI5 C;  4ZM2 A;  4HLG C;  3OEI E;  3G5O A;  3HS2 A;  4UVP B;  5ADS B;  3D55 A;  2ODK A;  4L2F C;  4L0B C;  4L0V C;  4L0S C;  4UI3 C;  5ADT B;  4ZLX A;  4KZL C;  4KZU C;  3OEI A;  4ZM0 A;  4L0I C;  3CTO A;  4UI6 C;  4HL5 C;  3KH2 E;  4L34 C;  4L2G C;  4HLF C;  3HJ6 A;  4HKK B;  4HLM C;  4UI7 C;  5C5P C;  5ADQ B;  4L31 C;  4UI8 C;  4HMH C;  5ADR B;  3HRY A;  5C5Q C;  4HKI C;  4L32 C;  5FPF C;  3K6Q A;  3K33 B; 
#chains in the Genus database with same CATH homology
 3OEI E;  3CTO A;  3KH2 E;  3D55 A;  3HRY A;  2ODK A;  2A6Q A;  3K33 B;  4ZLX A;  4ZM0 A;  4ZM2 A;  3OEI A;  3G5O A;  3K6Q A;  3HS2 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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