3QN1 | Genus

Total Genus 87

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	87
sequence length	321
structure length	295
Chain Sequence	DCIPLWGTVSIQGNRSEMEDAFAVSPHFLKLPIKMLMTHLTGHFFGVYDGHGGHKVADYCRDRLHFALAEEIERIKQVQWDKVFTSCFLTVDGEIEGKIGRAVVGSSDKVLEAVASETVGSTAVVALVCSSHIVVSNCGDSRAVLFRGKEAMPLSVDHKPDREDEYARIENAGGKVIQWQGARVFGVLAMSRSIGDRYLKPYVIPEPEVTFMPRSREDECLILASDGLWDVMNNQEVCEIARRRILMWHKKNGAPRGKGIDPACQAAADYLSMLALQKGSKDNISIIVIDLKAQR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 295 atoms

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1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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295 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Protein binding
source organism	Arabidopsis thaliana
publication title	Modulation of Abscisic Acid Signaling in Vivo by an Engineered Receptor-Insensitive Protein Phosphatase Type 2C Allele. pubmed doi rcsb
molecule keywords	Abscisic acid receptor PYR1
total genus	87
structure length	295
sequence length	321
ec nomenclature	ec 3.1.3.16: Protein-serine/threonine phosphatase.
pdb deposition date	2011-02-07

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
B	PF00481	PP2C	Protein phosphatase 2C

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.60.40.10	Alpha Beta	4-Layer Sandwich	Phosphatase 2c; domain 1	PPM-type phosphatase domain	3qn1B00

3NMNB 2J4OA 2V06A 3KE6A 2JFRA 3EQ2A 4LG5B 4LA7B 4RA2A 2XZVA 3MQ3A 1A6QA 3UJLB 4N0GA 2PNQA 2CM1A 3ZVUB 2POMA 3QN1B 3W42A 4WVOB 2JFSA 3W43A 3W44A 3FXKA 5D2UA 3ES2A 3FXOA 3F79A 2IQ1A 3NMTB 3W40A 3T9QA 3KB3B 3PU9A 2J82A 5F1MA 3T91A 5ITIA 3KDJB 4JNDA 4DA1A 2PK0A 2JFTA 2I0OA 1TXOA 3ZT9A 3D8KA 3FXMA 2ISNA 4YZGA 4DS8B 4LGBB 3W41A 3RNRA 2P8EA 2I44A 3W45A 2POPA 4OICB 5JO2B 4YZHA 2Y09A 4RAFA 4RAGA 3UJGB 3N3CA 2J86A 3NMVB 3FXJA 2IRMA 3JRQA 5JO1B 3RT0A 3UJKA 4LGAB 3FXLA
chains in the Genus database with same CATH superfamily

3NMNB 2J4OA 2V06A 3KE6A 2JFRA 3EQ2A 4LG5B 4LA7B 4RA2A 2XZVA 3MQ3A 1A6QA 3UJLB 4N0GA 2PNQA 2CM1A 3ZVUB 2POMA 3QN1B 3W42A 4WVOB 2JFSA 3W43A 3W44A 3FXKA 5D2UA 3ES2A 3FXOA 3F79A 2IQ1A 3NMTB 3W40A 4IIKA 3T9QA 3KB3B 3PU9A 2J82A 5F1MA 3T91A 5ITIA 3KDJB 4JNDA 4DA1A 2PK0A 2JFTA 2I0OA 1TXOA 3ZT9A 3D8KA 3FXMA 2ISNA 4YZGA 4DS8B 4LGBB 3W41A 3RNRA 2P8EA 2I44A 3W45A 4IIPA 2POPA 4OICB 5JO2B 4YZHA 2Y09A 4RAFA 4RAGA 3UJGB 3N3CA 2J86A 3NMVB 3FXJA 2IRMA 3JRQA 5JO1B 3RT0A 3UJKA 4LGAB 3FXLA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3NMN B;  2J4O A;  2V06 A;  3KE6 A;  2JFR A;  3EQ2 A;  4LG5 B;  4LA7 B;  4RA2 A;  2XZV A;  3MQ3 A;  1A6Q A;  3UJL B;  4N0G A;  2PNQ A;  2CM1 A;  3ZVU B;  2POM A;  3QN1 B;  3W42 A;  4WVO B;  2JFS A;  3W43 A;  3W44 A;  3FXK A;  5D2U A;  3ES2 A;  3FXO A;  3F79 A;  2IQ1 A;  3NMT B;  3W40 A;  3T9Q A;  3KB3 B;  3PU9 A;  2J82 A;  5F1M A;  3T91 A;  5ITI A;  3KDJ B;  4JND A;  4DA1 A;  2PK0 A;  2JFT A;  2I0O A;  1TXO A;  3ZT9 A;  3D8K A;  3FXM A;  2ISN A;  4YZG A;  4DS8 B;  4LGB B;  3W41 A;  3RNR A;  2P8E A;  2I44 A;  3W45 A;  2POP A;  4OIC B;  5JO2 B;  4YZH A;  2Y09 A;  4RAF A;  4RAG A;  3UJG B;  3N3C A;  2J86 A;  3NMV B;  3FXJ A;  2IRM A;  3JRQ A;  5JO1 B;  3RT0 A;  3UJK A;  4LGA B;  3FXL A; 
#chains in the Genus database with same CATH topology
 3NMN B;  2J4O A;  2V06 A;  3KE6 A;  2JFR A;  3EQ2 A;  4LG5 B;  4LA7 B;  4RA2 A;  2XZV A;  3MQ3 A;  1A6Q A;  3UJL B;  4N0G A;  2PNQ A;  2CM1 A;  3ZVU B;  2POM A;  3QN1 B;  3W42 A;  4WVO B;  2JFS A;  3W43 A;  3W44 A;  3FXK A;  5D2U A;  3ES2 A;  3FXO A;  3F79 A;  2IQ1 A;  3NMT B;  3W40 A;  4IIK A;  3T9Q A;  3KB3 B;  3PU9 A;  2J82 A;  5F1M A;  3T91 A;  5ITI A;  3KDJ B;  4JND A;  4DA1 A;  2PK0 A;  2JFT A;  2I0O A;  1TXO A;  3ZT9 A;  3D8K A;  3FXM A;  2ISN A;  4YZG A;  4DS8 B;  4LGB B;  3W41 A;  3RNR A;  2P8E A;  2I44 A;  3W45 A;  4IIP A;  2POP A;  4OIC B;  5JO2 B;  4YZH A;  2Y09 A;  4RAF A;  4RAG A;  3UJG B;  3N3C A;  2J86 A;  3NMV B;  3FXJ A;  2IRM A;  3JRQ A;  5JO1 B;  3RT0 A;  3UJK A;  4LGA B;  3FXL A; 
#chains in the Genus database with same CATH homology
 3NMN B;  2J4O A;  2V06 A;  3KE6 A;  2JFR A;  3EQ2 A;  4LG5 B;  4LA7 B;  4RA2 A;  2XZV A;  3MQ3 A;  1A6Q A;  3UJL B;  4N0G A;  2PNQ A;  2CM1 A;  3ZVU B;  2POM A;  3QN1 B;  3W42 A;  4WVO B;  2JFS A;  3W43 A;  3W44 A;  3FXK A;  5D2U A;  3ES2 A;  3FXO A;  3F79 A;  2IQ1 A;  3NMT B;  3W40 A;  3T9Q A;  3KB3 B;  3PU9 A;  2J82 A;  5F1M A;  3T91 A;  5ITI A;  3KDJ B;  4JND A;  4DA1 A;  2PK0 A;  2JFT A;  2I0O A;  1TXO A;  3ZT9 A;  3D8K A;  3FXM A;  2ISN A;  4YZG A;  4DS8 B;  4LGB B;  3W41 A;  3RNR A;  2P8E A;  2I44 A;  3W45 A;  2POP A;  4OIC B;  5JO2 B;  4YZH A;  2Y09 A;  4RAF A;  4RAG A;  3UJG B;  3N3C A;  2J86 A;  3NMV B;  3FXJ A;  2IRM A;  3JRQ A;  5JO1 B;  3RT0 A;  3UJK A;  4LGA B;  3FXL A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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3QN1B

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations