3QN1 | Genus

Total Genus 87

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	87
sequence length	321
structure length	295
Chain Sequence	DCIPLWGTVSIQGNRSEMEDAFAVSPHFLKLPIKMLMTHLTGHFFGVYDGHGGHKVADYCRDRLHFALAEEIERIKQVQWDKVFTSCFLTVDGEIEGKIGRAVVGSSDKVLEAVASETVGSTAVVALVCSSHIVVSNCGDSRAVLFRGKEAMPLSVDHKPDREDEYARIENAGGKVIQWQGARVFGVLAMSRSIGDRYLKPYVIPEPEVTFMPRSREDECLILASDGLWDVMNNQEVCEIARRRILMWHKKNGAPRGKGIDPACQAAADYLSMLALQKGSKDNISIIVIDLKAQR

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Protein binding
source organism	Arabidopsis thaliana
publication title	Modulation of Abscisic Acid Signaling in Vivo by an Engineered Receptor-Insensitive Protein Phosphatase Type 2C Allele. pubmed doi rcsb
molecule keywords	Abscisic acid receptor PYR1
total genus	87
structure length	295
sequence length	321
ec nomenclature	ec 3.1.3.16: Protein-serine/threonine phosphatase.
pdb deposition date	2011-02-07

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
B	PF00481	PP2C	Protein phosphatase 2C

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.60.40.10	Alpha Beta	4-Layer Sandwich	Phosphatase 2c; domain 1	PPM-type phosphatase domain	3qn1B00

5JO1B 2I44A 3KB3B 3UJKA 2IRMA 3UJGB 3N3CA 3W42A 3EQ2A 4JNDA 4RAFA 2JFTA 2V06A 2PNQA 4YZGA 3NMNB 3MQ3A 4DS8B 4RA2A 2IQ1A 5F1MA 2POPA 3FXLA 5D2UA 3W40A 3T91A 2J86A 4DA1A 5ITIA 2JFSA 3FXKA 3JRQA 4LG5B 4RAGA 3W45A 2JFRA 3ZT9A 3W44A 3FXMA 3PU9A 4OICB 3FXJA 3KE6A 3ES2A 2P8EA 2POMA 3KDJB 3RNRA 2CM1A 2XZVA 3UJLB 3ZVUB 2J4OA 3F79A 4YZHA 2ISNA 3QN1B 4LA7B 2J82A 3NMVB 4N0GA 4WVOB 3RT0A 4LGAB 2I0OA 1TXOA 2PK0A 4LGBB 3W43A 1A6QA 2Y09A 3W41A 3NMTB 5JO2B 3FXOA 3D8KA 3T9QA
chains in the Genus database with same CATH superfamily

5JO1B 2I44A 3KB3B 3UJKA 2IRMA 3UJGB 3N3CA 3W42A 3EQ2A 4JNDA 4RAFA 2JFTA 2V06A 2PNQA 4YZGA 3NMNB 3MQ3A 4DS8B 4RA2A 2IQ1A 5F1MA 2POPA 3FXLA 5D2UA 3W40A 3T91A 2J86A 4DA1A 5ITIA 2JFSA 3FXKA 3JRQA 4LG5B 4RAGA 3W45A 2JFRA 3ZT9A 3W44A 3FXMA 3PU9A 4OICB 3FXJA 3KE6A 3ES2A 2P8EA 2POMA 3KDJB 3RNRA 2CM1A 2XZVA 3UJLB 3ZVUB 2J4OA 3F79A 4YZHA 2ISNA 3QN1B 4LA7B 2J82A 3NMVB 4N0GA 4WVOB 3RT0A 4LGAB 2I0OA 1TXOA 2PK0A 4LGBB 3W43A 1A6QA 2Y09A 4IIPA 3W41A 3NMTB 5JO2B 3FXOA 4IIKA 3D8KA 3T9QA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 5JO1 B;  2I44 A;  3KB3 B;  3UJK A;  2IRM A;  3UJG B;  3N3C A;  3W42 A;  3EQ2 A;  4JND A;  4RAF A;  2JFT A;  2V06 A;  2PNQ A;  4YZG A;  3NMN B;  3MQ3 A;  4DS8 B;  4RA2 A;  2IQ1 A;  5F1M A;  2POP A;  3FXL A;  5D2U A;  3W40 A;  3T91 A;  2J86 A;  4DA1 A;  5ITI A;  2JFS A;  3FXK A;  3JRQ A;  4LG5 B;  4RAG A;  3W45 A;  2JFR A;  3ZT9 A;  3W44 A;  3FXM A;  3PU9 A;  4OIC B;  3FXJ A;  3KE6 A;  3ES2 A;  2P8E A;  2POM A;  3KDJ B;  3RNR A;  2CM1 A;  2XZV A;  3UJL B;  3ZVU B;  2J4O A;  3F79 A;  4YZH A;  2ISN A;  3QN1 B;  4LA7 B;  2J82 A;  3NMV B;  4N0G A;  4WVO B;  3RT0 A;  4LGA B;  2I0O A;  1TXO A;  2PK0 A;  4LGB B;  3W43 A;  1A6Q A;  2Y09 A;  3W41 A;  3NMT B;  5JO2 B;  3FXO A;  3D8K A;  3T9Q A; 
#chains in the Genus database with same CATH topology
 5JO1 B;  2I44 A;  3KB3 B;  3UJK A;  2IRM A;  3UJG B;  3N3C A;  3W42 A;  3EQ2 A;  4JND A;  4RAF A;  2JFT A;  2V06 A;  2PNQ A;  4YZG A;  3NMN B;  3MQ3 A;  4DS8 B;  4RA2 A;  2IQ1 A;  5F1M A;  2POP A;  3FXL A;  5D2U A;  3W40 A;  3T91 A;  2J86 A;  4DA1 A;  5ITI A;  2JFS A;  3FXK A;  3JRQ A;  4LG5 B;  4RAG A;  3W45 A;  2JFR A;  3ZT9 A;  3W44 A;  3FXM A;  3PU9 A;  4OIC B;  3FXJ A;  3KE6 A;  3ES2 A;  2P8E A;  2POM A;  3KDJ B;  3RNR A;  2CM1 A;  2XZV A;  3UJL B;  3ZVU B;  2J4O A;  3F79 A;  4YZH A;  2ISN A;  3QN1 B;  4LA7 B;  2J82 A;  3NMV B;  4N0G A;  4WVO B;  3RT0 A;  4LGA B;  2I0O A;  1TXO A;  2PK0 A;  4LGB B;  3W43 A;  1A6Q A;  2Y09 A;  4IIP A;  3W41 A;  3NMT B;  5JO2 B;  3FXO A;  4IIK A;  3D8K A;  3T9Q A; 
#chains in the Genus database with same CATH homology
 5JO1 B;  2I44 A;  3KB3 B;  3UJK A;  2IRM A;  3UJG B;  3N3C A;  3W42 A;  3EQ2 A;  4JND A;  4RAF A;  2JFT A;  2V06 A;  2PNQ A;  4YZG A;  3NMN B;  3MQ3 A;  4DS8 B;  4RA2 A;  2IQ1 A;  5F1M A;  2POP A;  3FXL A;  5D2U A;  3W40 A;  3T91 A;  2J86 A;  4DA1 A;  5ITI A;  2JFS A;  3FXK A;  3JRQ A;  4LG5 B;  4RAG A;  3W45 A;  2JFR A;  3ZT9 A;  3W44 A;  3FXM A;  3PU9 A;  4OIC B;  3FXJ A;  3KE6 A;  3ES2 A;  2P8E A;  2POM A;  3KDJ B;  3RNR A;  2CM1 A;  2XZV A;  3UJL B;  3ZVU B;  2J4O A;  3F79 A;  4YZH A;  2ISN A;  3QN1 B;  4LA7 B;  2J82 A;  3NMV B;  4N0G A;  4WVO B;  3RT0 A;  4LGA B;  2I0O A;  1TXO A;  2PK0 A;  4LGB B;  3W43 A;  1A6Q A;  2Y09 A;  3W41 A;  3NMT B;  5JO2 B;  3FXO A;  3D8K A;  3T9Q A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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3QN1B

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations