3RNR | Genus

Total Genus 50

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	50
sequence length	211
structure length	206
Chain Sequence	SNAVGTGGDKAYCVVVDGMGGMIRGDEAAQRALSASVGVLDAGGSPLDAVLAAQAAVHRWASQGGILGRTGATMAVAAVNLRDGTLEWASVGDCRVYLFKGGRLSRLSLDHNVSSEMVLLGRGPVPGPAGEMITSFIGIENLTEISTSEAPLPLEAGEGVLVVSDLHEDRIAMALSRGSDARGILQEVEAQGRPYQDNATLALVIL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 206 atoms

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Structural genomics, unknown function
source organism	Thermanaerovibrio acidaminovorans
publication title	Crystal Structure of Stage II Sporulation E Family Protein from Thermanaerovibrio acidaminovorans rcsb
molecule keywords	Stage II sporulation E family protein
total genus	50
structure length	206
sequence length	211
chains with identical sequence	B
ec nomenclature
pdb deposition date	2011-04-22

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF07228	SpoIIE	Stage II sporulation protein E (SpoIIE)

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.60.40.10	Alpha Beta	4-Layer Sandwich	Phosphatase 2c; domain 1	PPM-type phosphatase domain	3rnrA00

3W45A 3ES2A 2I0OA 3FXJA 4RAGA 2JFTA 3W44A 3KE6A 4RAFA 3FXLA 2I44A 2JFSA 4N0GA 3FXOA 1TXOA 4DS8B 2POMA 4YZHA 3D8KA 5F1MA 3JRQA 5JO2B 3FXKA 3ZVUB 3FXMA 2JFRA 3MQ3A 4DA1A 2XZVA 3W40A 3W41A 5ITIA 4LG5B 3QN1B 4LA7B 2J86A 1A6QA 2IRMA 4YZGA 3UJLB 3KDJB 3T9QA 2IQ1A 3NMTB 3F79A 2Y09A 3UJGB 3KB3B 2PNQA 2P8EA 4OICB 4LGAB 2J4OA 5D2UA 4LGBB 4WVOB 3NMNB 2ISNA 3N3CA 3RT0A 5JO1B 3UJKA 4RA2A 3W42A 2PK0A 2J82A 3RNRA 3EQ2A 2CM1A 3NMVB 2V06A 4JNDA 3ZT9A 3W43A 2POPA 3T91A 3PU9A
chains in the Genus database with same CATH superfamily

3W45A 3ES2A 2I0OA 3FXJA 4RAGA 2JFTA 3W44A 3KE6A 4RAFA 3FXLA 2I44A 2JFSA 4N0GA 4IIPA 3FXOA 1TXOA 4DS8B 2POMA 4YZHA 3D8KA 5F1MA 3JRQA 5JO2B 3FXKA 3ZVUB 3FXMA 2JFRA 3MQ3A 4DA1A 2XZVA 3W40A 3W41A 5ITIA 4LG5B 3QN1B 4LA7B 2J86A 1A6QA 2IRMA 4YZGA 3UJLB 3KDJB 3T9QA 2IQ1A 3NMTB 3F79A 2Y09A 3UJGB 3KB3B 2PNQA 2P8EA 4OICB 4LGAB 2J4OA 5D2UA 4LGBB 4WVOB 3NMNB 2ISNA 3N3CA 3RT0A 5JO1B 3UJKA 4RA2A 4IIKA 3W42A 2PK0A 2J82A 3RNRA 3EQ2A 2CM1A 3NMVB 2V06A 4JNDA 3ZT9A 3W43A 2POPA 3T91A 3PU9A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3W45 A;  3ES2 A;  2I0O A;  3FXJ A;  4RAG A;  2JFT A;  3W44 A;  3KE6 A;  4RAF A;  3FXL A;  2I44 A;  2JFS A;  4N0G A;  3FXO A;  1TXO A;  4DS8 B;  2POM A;  4YZH A;  3D8K A;  5F1M A;  3JRQ A;  5JO2 B;  3FXK A;  3ZVU B;  3FXM A;  2JFR A;  3MQ3 A;  4DA1 A;  2XZV A;  3W40 A;  3W41 A;  5ITI A;  4LG5 B;  3QN1 B;  4LA7 B;  2J86 A;  1A6Q A;  2IRM A;  4YZG A;  3UJL B;  3KDJ B;  3T9Q A;  2IQ1 A;  3NMT B;  3F79 A;  2Y09 A;  3UJG B;  3KB3 B;  2PNQ A;  2P8E A;  4OIC B;  4LGA B;  2J4O A;  5D2U A;  4LGB B;  4WVO B;  3NMN B;  2ISN A;  3N3C A;  3RT0 A;  5JO1 B;  3UJK A;  4RA2 A;  3W42 A;  2PK0 A;  2J82 A;  3RNR A;  3EQ2 A;  2CM1 A;  3NMV B;  2V06 A;  4JND A;  3ZT9 A;  3W43 A;  2POP A;  3T91 A;  3PU9 A; 
#chains in the Genus database with same CATH topology
 3W45 A;  3ES2 A;  2I0O A;  3FXJ A;  4RAG A;  2JFT A;  3W44 A;  3KE6 A;  4RAF A;  3FXL A;  2I44 A;  2JFS A;  4N0G A;  4IIP A;  3FXO A;  1TXO A;  4DS8 B;  2POM A;  4YZH A;  3D8K A;  5F1M A;  3JRQ A;  5JO2 B;  3FXK A;  3ZVU B;  3FXM A;  2JFR A;  3MQ3 A;  4DA1 A;  2XZV A;  3W40 A;  3W41 A;  5ITI A;  4LG5 B;  3QN1 B;  4LA7 B;  2J86 A;  1A6Q A;  2IRM A;  4YZG A;  3UJL B;  3KDJ B;  3T9Q A;  2IQ1 A;  3NMT B;  3F79 A;  2Y09 A;  3UJG B;  3KB3 B;  2PNQ A;  2P8E A;  4OIC B;  4LGA B;  2J4O A;  5D2U A;  4LGB B;  4WVO B;  3NMN B;  2ISN A;  3N3C A;  3RT0 A;  5JO1 B;  3UJK A;  4RA2 A;  4IIK A;  3W42 A;  2PK0 A;  2J82 A;  3RNR A;  3EQ2 A;  2CM1 A;  3NMV B;  2V06 A;  4JND A;  3ZT9 A;  3W43 A;  2POP A;  3T91 A;  3PU9 A; 
#chains in the Genus database with same CATH homology
 3W45 A;  3ES2 A;  2I0O A;  3FXJ A;  4RAG A;  2JFT A;  3W44 A;  3KE6 A;  4RAF A;  3FXL A;  2I44 A;  2JFS A;  4N0G A;  3FXO A;  1TXO A;  4DS8 B;  2POM A;  4YZH A;  3D8K A;  5F1M A;  3JRQ A;  5JO2 B;  3FXK A;  3ZVU B;  3FXM A;  2JFR A;  3MQ3 A;  4DA1 A;  2XZV A;  3W40 A;  3W41 A;  5ITI A;  4LG5 B;  3QN1 B;  4LA7 B;  2J86 A;  1A6Q A;  2IRM A;  4YZG A;  3UJL B;  3KDJ B;  3T9Q A;  2IQ1 A;  3NMT B;  3F79 A;  2Y09 A;  3UJG B;  3KB3 B;  2PNQ A;  2P8E A;  4OIC B;  4LGA B;  2J4O A;  5D2U A;  4LGB B;  4WVO B;  3NMN B;  2ISN A;  3N3C A;  3RT0 A;  5JO1 B;  3UJK A;  4RA2 A;  3W42 A;  2PK0 A;  2J82 A;  3RNR A;  3EQ2 A;  2CM1 A;  3NMV B;  2V06 A;  4JND A;  3ZT9 A;  3W43 A;  2POP A;  3T91 A;  3PU9 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3RNRA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations