3RQB | Genus

Total Genus 51

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	51
sequence length	264
structure length	264
Chain Sequence	VTHAFDDATALSFDGRQFHGQVKAEYYNMVGPFGGITAATMLKAAMSHPERLGQPLALTVNFAAPAKVAPFVIEAVPVRTNRSTQHFTLTMMQDGEVVTTATAVFGIRRESWSHTEAVMPDVPPPADVPRFVAPAPLPWMQWYHVRLIRGSAFDEVQDATTYQWMRDDPPRPLDHAALAALCDTFVPRVYVKLKRPVPIGTVTFTVYFLADPETIFRQGTNELLGVARATGFSHGYFDQIGEVWSQDGDLLATTTQLVYMKAPV

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 264 atoms

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264 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Structural genomics, unknown function
source organism	Alicyclobacillus acidocaldarius subsp. acidocaldarius
publication title	Crystal Structure of Conserved Protein of Unknown Function with Hot_dog Fold from Alicyclobacillus acidocaldarius rcsb
molecule keywords	Uncharacterized protein
total genus	51
structure length	264
sequence length	264
chains with identical sequence	B
ec nomenclature
pdb deposition date	2011-04-28

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF13622	4HBT_3	Thioesterase-like superfamily

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.10.129.90	Alpha Beta	Roll	Thiol Ester Dehydrase; Chain A	Thiol Ester Dehydrase; Chain A	3rqbA00

4R9ZA 4QFWA 3BBJA 4R4UA 3RQBA 3RD7A 3U0AA 3CJYA
chains in the Genus database with same CATH superfamily

4R9ZA 3LMBA 2B3MA 2GF6A 4I83A 1PN2A 2BI0A 2OAFA 2DSLA 3BNVA 3D04A 4GAKA 2VZ9A 4RLTA 4WNBB 3TEAA 3HDUA 5HMCA 5BUXA 3S6PA 3FRNA 3KUVA 3DP3A 4B0BA 1C8UA 3CF9A 2EGRA 5HD6A 4GAHA 1VI8A 4RLUB 1ZKIA 4K4BA 4RLWB 3GEKA 3R37A 2W3XA 3B7JA 3P2QA 4I45A 4A0ZA 3KG7A 1VH5A 3HMJG 1OHFA 2V1OA 3B18A 3DOYA 4H4GA 1WLVA 4K4CA 5CPGA 1WM6A 2OKHA 3BJKA 3KG9A 3K67A 4RLJB 3Q62A 3KVUA 3ESIA 3ZH5A 1Q6WA 3E1EA 3HM0A 3HRRA 2GLVA 4HZPA 3EL6A 4ZJBA 1SH8A 1U1ZA 4K49A 4OOCA 4QFWA 3ZH7B 4W78B 4A0XA 4RV2B 4A0YA 2O5UA 3LBEA 1Q4TA 2PRXA 2HLJA 4QD9A 4AE7A 1BVQA 3AZAA 2OV9A 2FUJA 3ED0A 3NWZA 2HX5A 5EP5A 5T06A 3R3FA 4K00A 3DOZA 3P2RA 3D6XA 4A12A 3P2SA 4CL6A 5EGLA 1YOCA 5KL9A 5BUYA 2OIWA 2QWZA 2O6BA 2VZ8A 3R3DA 4ZRBA 4R4UA 3F1TA 1LO8A 3LW3A 4OOBA 3RQBA 1Q4UA 3KH8A 4HZOA 1PN4A 2OWNA 2QQ2A 3IR3A 3KG8A 3KV7A 5BP3A 3KHPA 2GLPA 3R3AA 2Q78A 4QD8A 3DP0A 5DIOA 4B0CA 5T02A 3WEWA 3S4KA 2ESSA 3D6LA 2NUJA 1IXLA 1T82A 1Y7UA 3R3CA 4FQ9A 4ORDA 4K4DA 3KG6A 2GLMA 4K02A 3LZ7A 4YBVA 3R87A 4QDAA 5EGJA 3KVZA 4MTUA 3U0AA 5KKUA 3DP2A 4RLUA 2GVHA 1MKAA 3KX8A 4RLWA 2EGJA 1S5UA 5DM5A 2XEMA 3AZ9A 3EXZA 3F5OA 3LWGA 4ZV3A 5E1VA 2B6EA 5SZZA 2HBOA 4B0IA 1LO9A 2UV8G 4K4AA 4KC5A 1VPMA 4IENA 4HZNA 4RLJA 4RLTB 4ZRFA 4B8UA 5HZ4A 2GLLA 4MOBA 3KVIA 2EGIA 2FS2A 1LO7A 5BUWA 5BP2A 2CY9A 2QQPA 3AZ8A 2Q2BA 2O6TA 2F41A 4QDBA 4XY5A 3QY3A 1WLUA 1Z6BA 3ZH7A 1PSUA 4RMMA 3DKZA 3R32A 4AE8A 4M20A 4RV2A 5BYUA 1NJKA 5HMBA 5HWFA 2AV9A 2F3XA 3R3BA 3SPSA 5SZYA 5EO4A 2PIMA 4ZW0A 5SZUA 2C2IA 3R35A 4B0JA 2F0XA 4FFUA 3HRQA 4WNBA 1WN3A 3BBJA 2XFLA 2EISA 2CYEA 2PZHA 2OKIA 3KUWA 1ZHGA 4NCPA 1Q4SA 1SBKA 3CJYA 2VKZG 4KEHA 5SZVA 1S9CA 2O6UA 3E8PA 3KW1A 1TBUA 1VH9A 3AZBA 4XY6A 5T07A 4LN9A 1Z54A 3CF8A 2H4UA 3KV8A 3KX7A 4I82A 1J1YA 2PFCA 5EGKA 3B7KA 3R34A 4MZQA 3DP1A 4I4JA 4U3VA 4MOCA 3LBBA 3QOOA 4QD7A 1YLIA 5EO2A 3RD7A 1IQ6A 3E29A 3P3FA 2CWZA 5F6RA 1SC0A 3ZH6A 1MKBA 3OMLA 3CK1A 4W78A 4E3EA 3R36A 3P3IA
chains in the Genus database with same CATH topology

4QFWA 3KG6A 4OOCA 4R9ZA 3ZH7B 3HRQA 3BBJA 3U0AA 3CJYA 2VKZG 5KKUA 2VZ9A 3S6PA 3FRNA 5E1VA 4LN9A 2UV8G 4KC5A 2PFCA 2VZ8A 4U3VA 4R4UA 2QQPA 5BP2A 3RQBA 3KG7A 3RD7A 3HMJG 3KG8A 1OHFA 3B18A 3ZH6A 5BP3A 3ZH7A 3KG9A 3ZH5A 3HRRA 3EL6A
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 4R9Z A;  4QFW A;  3BBJ A;  4R4U A;  3RQB A;  3RD7 A;  3U0A A;  3CJY A; 
#chains in the Genus database with same CATH topology
 4R9Z A;  3LMB A;  2B3M A;  2GF6 A;  4I83 A;  1PN2 A;  2BI0 A;  2OAF A;  2DSL A;  3BNV A;  3D04 A;  4GAK A;  2VZ9 A;  4RLT A;  4WNB B;  3TEA A;  3HDU A;  5HMC A;  5BUX A;  3S6P A;  3FRN A;  3KUV A;  3DP3 A;  4B0B A;  1C8U A;  3CF9 A;  2EGR A;  5HD6 A;  4GAH A;  1VI8 A;  4RLU B;  1ZKI A;  4K4B A;  4RLW B;  3GEK A;  3R37 A;  2W3X A;  3B7J A;  3P2Q A;  4I45 A;  4A0Z A;  3KG7 A;  1VH5 A;  3HMJ G;  1OHF A;  2V1O A;  3B18 A;  3DOY A;  4H4G A;  1WLV A;  4K4C A;  5CPG A;  1WM6 A;  2OKH A;  3BJK A;  3KG9 A;  3K67 A;  4RLJ B;  3Q62 A;  3KVU A;  3ESI A;  3ZH5 A;  1Q6W A;  3E1E A;  3HM0 A;  3HRR A;  2GLV A;  4HZP A;  3EL6 A;  4ZJB A;  1SH8 A;  1U1Z A;  4K49 A;  4OOC A;  4QFW A;  3ZH7 B;  4W78 B;  4A0X A;  4RV2 B;  4A0Y A;  2O5U A;  3LBE A;  1Q4T A;  2PRX A;  2HLJ A;  4QD9 A;  4AE7 A;  1BVQ A;  3AZA A;  2OV9 A;  2FUJ A;  3ED0 A;  3NWZ A;  2HX5 A;  5EP5 A;  5T06 A;  3R3F A;  4K00 A;  3DOZ A;  3P2R A;  3D6X A;  4A12 A;  3P2S A;  4CL6 A;  5EGL A;  1YOC A;  5KL9 A;  5BUY A;  2OIW A;  2QWZ A;  2O6B A;  2VZ8 A;  3R3D A;  4ZRB A;  4R4U A;  3F1T A;  1LO8 A;  3LW3 A;  4OOB A;  3RQB A;  1Q4U A;  3KH8 A;  4HZO A;  1PN4 A;  2OWN A;  2QQ2 A;  3IR3 A;  3KG8 A;  3KV7 A;  5BP3 A;  3KHP A;  2GLP A;  3R3A A;  2Q78 A;  4QD8 A;  3DP0 A;  5DIO A;  4B0C A;  5T02 A;  3WEW A;  3S4K A;  2ESS A;  3D6L A;  2NUJ A;  1IXL A;  1T82 A;  1Y7U A;  3R3C A;  4FQ9 A;  4ORD A;  4K4D A;  3KG6 A;  2GLM A;  4K02 A;  3LZ7 A;  4YBV A;  3R87 A;  4QDA A;  5EGJ A;  3KVZ A;  4MTU A;  3U0A A;  5KKU A;  3DP2 A;  4RLU A;  2GVH A;  1MKA A;  3KX8 A;  4RLW A;  2EGJ A;  1S5U A;  5DM5 A;  2XEM A;  3AZ9 A;  3EXZ A;  3F5O A;  3LWG A;  4ZV3 A;  5E1V A;  2B6E A;  5SZZ A;  2HBO A;  4B0I A;  1LO9 A;  2UV8 G;  4K4A A;  4KC5 A;  1VPM A;  4IEN A;  4HZN A;  4RLJ A;  4RLT B;  4ZRF A;  4B8U A;  5HZ4 A;  2GLL A;  4MOB A;  3KVI A;  2EGI A;  2FS2 A;  1LO7 A;  5BUW A;  5BP2 A;  2CY9 A;  2QQP A;  3AZ8 A;  2Q2B A;  2O6T A;  2F41 A;  4QDB A;  4XY5 A;  3QY3 A;  1WLU A;  1Z6B A;  3ZH7 A;  1PSU A;  4RMM A;  3DKZ A;  3R32 A;  4AE8 A;  4M20 A;  4RV2 A;  5BYU A;  1NJK A;  5HMB A;  5HWF A;  2AV9 A;  2F3X A;  3R3B A;  3SPS A;  5SZY A;  5EO4 A;  2PIM A;  4ZW0 A;  5SZU A;  2C2I A;  3R35 A;  4B0J A;  2F0X A;  4FFU A;  3HRQ A;  4WNB A;  1WN3 A;  3BBJ A;  2XFL A;  2EIS A;  2CYE A;  2PZH A;  2OKI A;  3KUW A;  1ZHG A;  4NCP A;  1Q4S A;  1SBK A;  3CJY A;  2VKZ G;  4KEH A;  5SZV A;  1S9C A;  2O6U A;  3E8P A;  3KW1 A;  1TBU A;  1VH9 A;  3AZB A;  4XY6 A;  5T07 A;  4LN9 A;  1Z54 A;  3CF8 A;  2H4U A;  3KV8 A;  3KX7 A;  4I82 A;  1J1Y A;  2PFC A;  5EGK A;  3B7K A;  3R34 A;  4MZQ A;  3DP1 A;  4I4J A;  4U3V A;  4MOC A;  3LBB A;  3QOO A;  4QD7 A;  1YLI A;  5EO2 A;  3RD7 A;  1IQ6 A;  3E29 A;  3P3F A;  2CWZ A;  5F6R A;  1SC0 A;  3ZH6 A;  1MKB A;  3OML A;  3CK1 A;  4W78 A;  4E3E A;  3R36 A;  3P3I A; 
#chains in the Genus database with same CATH homology
 4QFW A;  3KG6 A;  4OOC A;  4R9Z A;  3ZH7 B;  3HRQ A;  3BBJ A;  3U0A A;  3CJY A;  2VKZ G;  5KKU A;  2VZ9 A;  3S6P A;  3FRN A;  5E1V A;  4LN9 A;  2UV8 G;  4KC5 A;  2PFC A;  2VZ8 A;  4U3V A;  4R4U A;  2QQP A;  5BP2 A;  3RQB A;  3KG7 A;  3RD7 A;  3HMJ G;  3KG8 A;  1OHF A;  3B18 A;  3ZH6 A;  5BP3 A;  3ZH7 A;  3KG9 A;  3ZH5 A;  3HRR A;  3EL6 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3RQBA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations