3RT0 | Genus

Total Genus 102

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	102
sequence length	331
structure length	328
Chain Sequence	SVYELDCIPLWGTVSIQGNRSEMEDAFAVSPHFLKLPIKMLMGDHEGMSTHLTGHFFGVYDGHGGHKVADYCRDRLHFALAEEIERIKDELSKRNTGEGRQVQWDKVFTSCFLTVDGEIEGKIGRAVVGSSDKVLEAVASETVGSTAVVALVCSSHIVVSNCGDSRAVLFRGKEAMPLSVDHKPDREDEYARIENAGGKVIQWQGARVFGVLAMSRSIGDRYLKPYVIPEPEVTFMPRSREDECLILASDGLWDVMNNQEVCEIARRRILMWHKKNGAPPLAERGKGIDPACQAAADYLSMLALQKGSKDNISIIVIDLKAQRKFKTR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 328 atoms

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328 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Hydrolase/hydrolase inhibitor
source organism	Arabidopsis thaliana
publication title	The Molecular Basis of ABA-Independent Inhibition of PP2Cs by a Subclass of PYL Proteins pubmed doi rcsb
molecule keywords	Protein phosphatase 2C 16
total genus	102
structure length	328
sequence length	331
chains with identical sequence	B
ec nomenclature	ec 3.1.3.16: Protein-serine/threonine phosphatase.
pdb deposition date	2011-05-02

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00481	PP2C	Protein phosphatase 2C

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.60.40.10	Alpha Beta	4-Layer Sandwich	Phosphatase 2c; domain 1	PPM-type phosphatase domain	3rt0A00

4RAGA 5ITIA 3UJKA 3UJGB 3ZT9A 2PK0A 2JFSA 2V06A 3W41A 4WVOB 1A6QA 3KE6A 3D8KA 2P8EA 3FXOA 3NMTB 4JNDA 3W43A 2I0OA 4DA1A 3RNRA 2IQ1A 3ZVUB 3KB3B 2Y09A 2XZVA 4N0GA 3W40A 3NMVB 4LGBB 2J4OA 1TXOA 2CM1A 4LGAB 3NMNB 2JFRA 3QN1B 3W44A 2J82A 2POMA 4LG5B 2POPA 5D2UA 3JRQA 3FXJA 4RAFA 2I44A 3FXLA 4LA7B 3UJLB 3FXMA 4OICB 3T91A 4DS8B 2IRMA 3MQ3A 3KDJB 5JO1B 2JFTA 3ES2A 4YZGA 3RT0A 3F79A 2ISNA 5JO2B 4RA2A 3W45A 3W42A 5F1MA 3FXKA 3T9QA 3N3CA 3PU9A 2PNQA 4YZHA 2J86A 3EQ2A
chains in the Genus database with same CATH superfamily

4RAGA 5ITIA 3UJKA 3UJGB 3ZT9A 2PK0A 2JFSA 2V06A 4IIPA 3W41A 4WVOB 4IIKA 1A6QA 3KE6A 3D8KA 2P8EA 3FXOA 3NMTB 4JNDA 3W43A 2I0OA 4DA1A 3RNRA 2IQ1A 3ZVUB 3KB3B 2Y09A 2XZVA 4N0GA 3W40A 3NMVB 4LGBB 2J4OA 1TXOA 2CM1A 4LGAB 3NMNB 2JFRA 3QN1B 3W44A 2J82A 2POMA 4LG5B 2POPA 5D2UA 3JRQA 3FXJA 4RAFA 2I44A 3FXLA 4LA7B 3UJLB 3FXMA 4OICB 3T91A 4DS8B 2IRMA 3MQ3A 3KDJB 5JO1B 2JFTA 3ES2A 4YZGA 3RT0A 3F79A 2ISNA 5JO2B 4RA2A 3W45A 3W42A 5F1MA 3FXKA 3T9QA 3N3CA 3PU9A 2PNQA 4YZHA 2J86A 3EQ2A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 4RAG A;  5ITI A;  3UJK A;  3UJG B;  3ZT9 A;  2PK0 A;  2JFS A;  2V06 A;  3W41 A;  4WVO B;  1A6Q A;  3KE6 A;  3D8K A;  2P8E A;  3FXO A;  3NMT B;  4JND A;  3W43 A;  2I0O A;  4DA1 A;  3RNR A;  2IQ1 A;  3ZVU B;  3KB3 B;  2Y09 A;  2XZV A;  4N0G A;  3W40 A;  3NMV B;  4LGB B;  2J4O A;  1TXO A;  2CM1 A;  4LGA B;  3NMN B;  2JFR A;  3QN1 B;  3W44 A;  2J82 A;  2POM A;  4LG5 B;  2POP A;  5D2U A;  3JRQ A;  3FXJ A;  4RAF A;  2I44 A;  3FXL A;  4LA7 B;  3UJL B;  3FXM A;  4OIC B;  3T91 A;  4DS8 B;  2IRM A;  3MQ3 A;  3KDJ B;  5JO1 B;  2JFT A;  3ES2 A;  4YZG A;  3RT0 A;  3F79 A;  2ISN A;  5JO2 B;  4RA2 A;  3W45 A;  3W42 A;  5F1M A;  3FXK A;  3T9Q A;  3N3C A;  3PU9 A;  2PNQ A;  4YZH A;  2J86 A;  3EQ2 A; 
#chains in the Genus database with same CATH topology
 4RAG A;  5ITI A;  3UJK A;  3UJG B;  3ZT9 A;  2PK0 A;  2JFS A;  2V06 A;  4IIP A;  3W41 A;  4WVO B;  4IIK A;  1A6Q A;  3KE6 A;  3D8K A;  2P8E A;  3FXO A;  3NMT B;  4JND A;  3W43 A;  2I0O A;  4DA1 A;  3RNR A;  2IQ1 A;  3ZVU B;  3KB3 B;  2Y09 A;  2XZV A;  4N0G A;  3W40 A;  3NMV B;  4LGB B;  2J4O A;  1TXO A;  2CM1 A;  4LGA B;  3NMN B;  2JFR A;  3QN1 B;  3W44 A;  2J82 A;  2POM A;  4LG5 B;  2POP A;  5D2U A;  3JRQ A;  3FXJ A;  4RAF A;  2I44 A;  3FXL A;  4LA7 B;  3UJL B;  3FXM A;  4OIC B;  3T91 A;  4DS8 B;  2IRM A;  3MQ3 A;  3KDJ B;  5JO1 B;  2JFT A;  3ES2 A;  4YZG A;  3RT0 A;  3F79 A;  2ISN A;  5JO2 B;  4RA2 A;  3W45 A;  3W42 A;  5F1M A;  3FXK A;  3T9Q A;  3N3C A;  3PU9 A;  2PNQ A;  4YZH A;  2J86 A;  3EQ2 A; 
#chains in the Genus database with same CATH homology
 4RAG A;  5ITI A;  3UJK A;  3UJG B;  3ZT9 A;  2PK0 A;  2JFS A;  2V06 A;  3W41 A;  4WVO B;  1A6Q A;  3KE6 A;  3D8K A;  2P8E A;  3FXO A;  3NMT B;  4JND A;  3W43 A;  2I0O A;  4DA1 A;  3RNR A;  2IQ1 A;  3ZVU B;  3KB3 B;  2Y09 A;  2XZV A;  4N0G A;  3W40 A;  3NMV B;  4LGB B;  2J4O A;  1TXO A;  2CM1 A;  4LGA B;  3NMN B;  2JFR A;  3QN1 B;  3W44 A;  2J82 A;  2POM A;  4LG5 B;  2POP A;  5D2U A;  3JRQ A;  3FXJ A;  4RAF A;  2I44 A;  3FXL A;  4LA7 B;  3UJL B;  3FXM A;  4OIC B;  3T91 A;  4DS8 B;  2IRM A;  3MQ3 A;  3KDJ B;  5JO1 B;  2JFT A;  3ES2 A;  4YZG A;  3RT0 A;  3F79 A;  2ISN A;  5JO2 B;  4RA2 A;  3W45 A;  3W42 A;  5F1M A;  3FXK A;  3T9Q A;  3N3C A;  3PU9 A;  2PNQ A;  4YZH A;  2J86 A;  3EQ2 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3RT0A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations