3VX7 | Genus

Total Genus 39

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	39
sequence length	151
structure length	151
Chain Sequence	PLGSMLTLPEYNEQIPNVRSLLTKWAKVERIQDVQDGLQLDVRLKTDTLLELHIYYDHVYHVPSIKFRLWSLDTEEDISSLRLLTLSDSELRSILNLGTFSVTLSTDMEMKSVYYYINNCDTDANVGSDVEHYLTRWISLYIRIFDLNFVP

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Non-canonical recognition and ambiguous Ubl-loading of two distinct E2s by autophagy-essential E1, Atg7 rcsb
molecule keywords	E1
molecule tags	Ligase
source organism	Kluyveromyces marxianus
total genus	39
structure length	151
sequence length	151
ec nomenclature
pdb deposition date	2012-09-11

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
B	PF03987	Autophagy_act_C	Autophagocytosis associated protein, active-site domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.1460.50	Alpha Beta	2-Layer Sandwich	Yope Regulator; Chain: A,	Yope Regulator; Chain: A,	3vx7B00

3VX8B 4GSLC 2DYTA 2LPUA 4EBRA 3VX7B
chains in the Genus database with same CATH superfamily

2P9KD 2P9NF 2P9UD 1RY9A 4JD2F 1TYQD 2OD0A 2P9ID 2P9PD 1JYOA 2KC5A 2P9PF 3DXMF 3UKRF 4JD2D 2FM8A 1K3SA 3VX8B 4GF3A 4H5BA 3ULEF 1K8KF 2MQDA 2P9ND 2DYTA 1JYAA 1L2WA 2BHOA 3DXMD 3KXYA 3TU3A 3UKRD 3ULED 4GSLC 1K8KD 1N5BA 1U2VF 2P9SF 1TTWA 2BSIA 2P9IF 3UKUF 1XKPB 2PLGA 3DWLF 2LPUA 4G6TA 3RSEF 4EBRA 1K6ZA 2BSHA 2P9LF 3DXKF 3CXJA 1XKPC 1U2VD 1S28A 3VX7B 4JMFB 4XEIF 2P9SD 4AKXA 3DWLD 3UKUD 2P9LD 2XGAA 2P9KF 3RSED 2P9UF 3DXKD 2BSJA 1TYQF 3EPUA 4XEID 1K3EA
chains in the Genus database with same CATH topology

2P9KD 2P9NF 2P9UD 1RY9A 4JD2F 1TYQD 2P9ID 2P9PD 1JYOA 2KC5A 2P9PF 3DXMF 3UKRF 4JD2D 2FM8A 1K3SA 3VX8B 4GF3A 4H5BA 3ULEF 1K8KF 2MQDA 2P9ND 2DYTA 1JYAA 1L2WA 2BHOA 3DXMD 3KXYA 3TU3A 3UKRD 3ULED 4GSLC 1K8KD 1N5BA 1U2VF 2P9SF 1TTWA 2BSIA 2P9IF 3UKUF 1XKPB 2PLGA 3DWLF 2LPUA 4G6TA 3RSEF 4EBRA 1K6ZA 2BSHA 2P9LF 3DXKF 3CXJA 1XKPC 1U2VD 1S28A 3VX7B 4JMFB 4XEIF 2P9SD 4AKXA 3DWLD 3UKUD 2P9LD 2XGAA 2P9KF 3RSED 2P9UF 3DXKD 2BSJA 1TYQF 3EPUA 4XEID 1K3EA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 3VX8 B;  4GSL C;  2DYT A;  2LPU A;  4EBR A;  3VX7 B; 
#chains in the Genus database with same CATH topology
 2P9K D;  2P9N F;  2P9U D;  1RY9 A;  4JD2 F;  1TYQ D;  2OD0 A;  2P9I D;  2P9P D;  1JYO A;  2KC5 A;  2P9P F;  3DXM F;  3UKR F;  4JD2 D;  2FM8 A;  1K3S A;  3VX8 B;  4GF3 A;  4H5B A;  3ULE F;  1K8K F;  2MQD A;  2P9N D;  2DYT A;  1JYA A;  1L2W A;  2BHO A;  3DXM D;  3KXY A;  3TU3 A;  3UKR D;  3ULE D;  4GSL C;  1K8K D;  1N5B A;  1U2V F;  2P9S F;  1TTW A;  2BSI A;  2P9I F;  3UKU F;  1XKP B;  2PLG A;  3DWL F;  2LPU A;  4G6T A;  3RSE F;  4EBR A;  1K6Z A;  2BSH A;  2P9L F;  3DXK F;  3CXJ A;  1XKP C;  1U2V D;  1S28 A;  3VX7 B;  4JMF B;  4XEI F;  2P9S D;  4AKX A;  3DWL D;  3UKU D;  2P9L D;  2XGA A;  2P9K F;  3RSE D;  2P9U F;  3DXK D;  2BSJ A;  1TYQ F;  3EPU A;  4XEI D;  1K3E A; 
#chains in the Genus database with same CATH homology
 2P9K D;  2P9N F;  2P9U D;  1RY9 A;  4JD2 F;  1TYQ D;  2P9I D;  2P9P D;  1JYO A;  2KC5 A;  2P9P F;  3DXM F;  3UKR F;  4JD2 D;  2FM8 A;  1K3S A;  3VX8 B;  4GF3 A;  4H5B A;  3ULE F;  1K8K F;  2MQD A;  2P9N D;  2DYT A;  1JYA A;  1L2W A;  2BHO A;  3DXM D;  3KXY A;  3TU3 A;  3UKR D;  3ULE D;  4GSL C;  1K8K D;  1N5B A;  1U2V F;  2P9S F;  1TTW A;  2BSI A;  2P9I F;  3UKU F;  1XKP B;  2PLG A;  3DWL F;  2LPU A;  4G6T A;  3RSE F;  4EBR A;  1K6Z A;  2BSH A;  2P9L F;  3DXK F;  3CXJ A;  1XKP C;  1U2V D;  1S28 A;  3VX7 B;  4JMF B;  4XEI F;  2P9S D;  4AKX A;  3DWL D;  3UKU D;  2P9L D;  2XGA A;  2P9K F;  3RSE D;  2P9U F;  3DXK D;  2BSJ A;  1TYQ F;  3EPU A;  4XEI D;  1K3E A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3VX7B

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations