3VX7B

Crystal structure of kluyveromyces marxianus atg7ntd-atg10 complex
Total Genus 39
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
39
sequence length
151
structure length
151
Chain Sequence
PLGSMLTLPEYNEQIPNVRSLLTKWAKVERIQDVQDGLQLDVRLKTDTLLELHIYYDHVYHVPSIKFRLWSLDTEEDISSLRLLTLSDSELRSILNLGTFSVTLSTDMEMKSVYYYINNCDTDANVGSDVEHYLTRWISLYIRIFDLNFVP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Non-canonical recognition and ambiguous Ubl-loading of two distinct E2s by autophagy-essential E1, Atg7
rcsb
molecule tags Ligase
source organism Kluyveromyces marxianus
molecule keywords E1
total genus 39
structure length 151
sequence length 151
ec nomenclature
pdb deposition date 2012-09-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF03987 Autophagy_act_C Autophagocytosis associated protein, active-site domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1460.50 Alpha Beta 2-Layer Sandwich Yope Regulator; Chain: A, Yope Regulator; Chain: A, 3vx7B00
2LPUA 2DYTA 4GSLC 3VX7B 4EBRA 3VX8B
chains in the Genus database with same CATH superfamily
3EPUA 4AKXA 1K8KD 1K6ZA 3VX7B 2P9ND 2P9LD 3ULED 3UKUF 3VX8B 2P9SD 3DXMD 1K3EA 4G6TA 4GF3A 2P9PF 1XKPC 3TU3A 2XGAA 2P9UF 4XEID 1JYAA 1TTWA 1U2VD 2DYTA 4GSLC 3RSEF 1JYOA 4EBRA 2P9KD 2KC5A 4JD2D 1S28A 1K8KF 4H5BA 2P9NF 3ULEF 1N5BA 2BSJA 3DWLD 2BSHA 2P9SF 2P9LF 2MQDA 3DXKD 3DXMF 2BHOA 1TYQD 2P9ID 3UKRD 1K3SA 4XEIF 1U2VF 3CXJA 2OD0A 1L2WA 2PLGA 2P9KF 4JMFB 3UKUD 1RY9A 2LPUA 4JD2F 3KXYA 1XKPB 3DWLF 2P9PD 2P9UD 3DXKF 3RSED 2BSIA 3UKRF 1TYQF 2P9IF 2FM8A
chains in the Genus database with same CATH topology
3EPUA 4AKXA 1K8KD 1K6ZA 3VX7B 2P9ND 2P9LD 3ULED 3UKUF 3VX8B 2P9SD 3DXMD 1K3EA 4G6TA 4GF3A 2P9PF 1XKPC 3TU3A 2XGAA 2P9UF 4XEID 1JYAA 1TTWA 1U2VD 2DYTA 4GSLC 3RSEF 1JYOA 4EBRA 2P9KD 2KC5A 4JD2D 1S28A 1K8KF 4H5BA 2P9NF 3ULEF 1N5BA 2BSJA 3DWLD 2BSHA 2P9SF 2P9LF 2MQDA 3DXKD 3DXMF 2BHOA 1TYQD 2P9ID 3UKRD 1K3SA 4XEIF 1U2VF 3CXJA 2PLGA 1L2WA 4JMFB 2P9KF 3UKUD 1RY9A 2LPUA 4JD2F 3KXYA 1XKPB 3DWLF 2P9PD 2P9UD 3DXKF 3RSED 2BSIA 3UKRF 1TYQF 2P9IF 2FM8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2LPU A;  2DYT A;  4GSL C;  3VX7 B;  4EBR A;  3VX8 B; 
#chains in the Genus database with same CATH topology
 3EPU A;  4AKX A;  1K8K D;  1K6Z A;  3VX7 B;  2P9N D;  2P9L D;  3ULE D;  3UKU F;  3VX8 B;  2P9S D;  3DXM D;  1K3E A;  4G6T A;  4GF3 A;  2P9P F;  1XKP C;  3TU3 A;  2XGA A;  2P9U F;  4XEI D;  1JYA A;  1TTW A;  1U2V D;  2DYT A;  4GSL C;  3RSE F;  1JYO A;  4EBR A;  2P9K D;  2KC5 A;  4JD2 D;  1S28 A;  1K8K F;  4H5B A;  2P9N F;  3ULE F;  1N5B A;  2BSJ A;  3DWL D;  2BSH A;  2P9S F;  2P9L F;  2MQD A;  3DXK D;  3DXM F;  2BHO A;  1TYQ D;  2P9I D;  3UKR D;  1K3S A;  4XEI F;  1U2V F;  3CXJ A;  2OD0 A;  1L2W A;  2PLG A;  2P9K F;  4JMF B;  3UKU D;  1RY9 A;  2LPU A;  4JD2 F;  3KXY A;  1XKP B;  3DWL F;  2P9P D;  2P9U D;  3DXK F;  3RSE D;  2BSI A;  3UKR F;  1TYQ F;  2P9I F;  2FM8 A; 
#chains in the Genus database with same CATH homology
 3EPU A;  4AKX A;  1K8K D;  1K6Z A;  3VX7 B;  2P9N D;  2P9L D;  3ULE D;  3UKU F;  3VX8 B;  2P9S D;  3DXM D;  1K3E A;  4G6T A;  4GF3 A;  2P9P F;  1XKP C;  3TU3 A;  2XGA A;  2P9U F;  4XEI D;  1JYA A;  1TTW A;  1U2V D;  2DYT A;  4GSL C;  3RSE F;  1JYO A;  4EBR A;  2P9K D;  2KC5 A;  4JD2 D;  1S28 A;  1K8K F;  4H5B A;  2P9N F;  3ULE F;  1N5B A;  2BSJ A;  3DWL D;  2BSH A;  2P9S F;  2P9L F;  2MQD A;  3DXK D;  3DXM F;  2BHO A;  1TYQ D;  2P9I D;  3UKR D;  1K3S A;  4XEI F;  1U2V F;  3CXJ A;  2PLG A;  1L2W A;  4JMF B;  2P9K F;  3UKU D;  1RY9 A;  2LPU A;  4JD2 F;  3KXY A;  1XKP B;  3DWL F;  2P9P D;  2P9U D;  3DXK F;  3RSE D;  2BSI A;  3UKR F;  1TYQ F;  2P9I F;  2FM8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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