3W40 | Genus

Total Genus 64

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	64
sequence length	199
structure length	199
Chain Sequence	MIQVEENEHIQTLVYQLNKEGKSICGDSFFMKADDKELICAVADGLGSGSLANESSAAIKDLVENYASEDVESIIERCNQAMKNKRGATASILKINFEQRQFTYCSVGNVRFILHSPSGESFYPLPISGYLSGKPQKYKTHTATYEKGSKFIIHTDGLNVPDIRSHLKKGQSVEEISNSLKMYTTSRKDDLTYILGQLS

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 199 atoms

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199 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Hydrolase
source organism	Bacillus subtilis
publication title	Structure of the RsbX phosphatase involved in the general stress response of Bacillus subtilis pubmed doi rcsb
molecule keywords	Phosphoserine phosphatase RsbX
total genus	64
structure length	199
sequence length	199
chains with identical sequence	B
ec nomenclature	ec 3.1.3.3: Phosphoserine phosphatase.
pdb deposition date	2013-01-04

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF07228	SpoIIE	Stage II sporulation protein E (SpoIIE)

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.60.40.10	Alpha Beta	4-Layer Sandwich	Phosphatase 2c; domain 1	PPM-type phosphatase domain	3w40A00

2POPA 4RA2A 3JRQA 1TXOA 2JFSA 3MQ3A 3RNRA 5JO1B 4DS8B 3W42A 3PU9A 2PNQA 3FXJA 2ISNA 2CM1A 4N0GA 1A6QA 2IRMA 4YZHA 3W44A 3F79A 3NMNB 2XZVA 3KDJB 2V06A 3W41A 4OICB 2JFRA 3ES2A 3T91A 5D2UA 3D8KA 2I44A 2J4OA 4YZGA 3W40A 4LA7B 3UJLB 2I0OA 4LG5B 3FXKA 2P8EA 3ZT9A 3W43A 3ZVUB 2JFTA 3FXMA 3EQ2A 3KE6A 3NMVB 3UJGB 5ITIA 4RAFA 4JNDA 2POMA 2Y09A 3UJKA 5F1MA 2J86A 3FXLA 4LGBB 2IQ1A 5JO2B 4WVOB 3QN1B 3FXOA 3NMTB 3W45A 2PK0A 3N3CA 3KB3B 3RT0A 2J82A 4LGAB 4DA1A 3T9QA 4RAGA
chains in the Genus database with same CATH superfamily

2POPA 4RA2A 3JRQA 1TXOA 2JFSA 3MQ3A 3RNRA 5JO1B 4DS8B 3W42A 3PU9A 2PNQA 3FXJA 2ISNA 2CM1A 4N0GA 1A6QA 2IRMA 4YZHA 3W44A 3F79A 3NMNB 2XZVA 3KDJB 2V06A 3W41A 4OICB 2JFRA 3ES2A 3T91A 5D2UA 3D8KA 2I44A 2J4OA 4YZGA 3W40A 4LA7B 3UJLB 2I0OA 4LG5B 3FXKA 2P8EA 3ZT9A 4IIKA 3W43A 3ZVUB 2JFTA 3FXMA 3EQ2A 3KE6A 3NMVB 3UJGB 5ITIA 4RAFA 4JNDA 2POMA 2Y09A 3UJKA 5F1MA 2J86A 3FXLA 4LGBB 2IQ1A 5JO2B 4WVOB 3QN1B 3FXOA 3NMTB 3W45A 2PK0A 3N3CA 3KB3B 4IIPA 3RT0A 2J82A 4LGAB 4DA1A 3T9QA 4RAGA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 2POP A;  4RA2 A;  3JRQ A;  1TXO A;  2JFS A;  3MQ3 A;  3RNR A;  5JO1 B;  4DS8 B;  3W42 A;  3PU9 A;  2PNQ A;  3FXJ A;  2ISN A;  2CM1 A;  4N0G A;  1A6Q A;  2IRM A;  4YZH A;  3W44 A;  3F79 A;  3NMN B;  2XZV A;  3KDJ B;  2V06 A;  3W41 A;  4OIC B;  2JFR A;  3ES2 A;  3T91 A;  5D2U A;  3D8K A;  2I44 A;  2J4O A;  4YZG A;  3W40 A;  4LA7 B;  3UJL B;  2I0O A;  4LG5 B;  3FXK A;  2P8E A;  3ZT9 A;  3W43 A;  3ZVU B;  2JFT A;  3FXM A;  3EQ2 A;  3KE6 A;  3NMV B;  3UJG B;  5ITI A;  4RAF A;  4JND A;  2POM A;  2Y09 A;  3UJK A;  5F1M A;  2J86 A;  3FXL A;  4LGB B;  2IQ1 A;  5JO2 B;  4WVO B;  3QN1 B;  3FXO A;  3NMT B;  3W45 A;  2PK0 A;  3N3C A;  3KB3 B;  3RT0 A;  2J82 A;  4LGA B;  4DA1 A;  3T9Q A;  4RAG A; 
#chains in the Genus database with same CATH topology
 2POP A;  4RA2 A;  3JRQ A;  1TXO A;  2JFS A;  3MQ3 A;  3RNR A;  5JO1 B;  4DS8 B;  3W42 A;  3PU9 A;  2PNQ A;  3FXJ A;  2ISN A;  2CM1 A;  4N0G A;  1A6Q A;  2IRM A;  4YZH A;  3W44 A;  3F79 A;  3NMN B;  2XZV A;  3KDJ B;  2V06 A;  3W41 A;  4OIC B;  2JFR A;  3ES2 A;  3T91 A;  5D2U A;  3D8K A;  2I44 A;  2J4O A;  4YZG A;  3W40 A;  4LA7 B;  3UJL B;  2I0O A;  4LG5 B;  3FXK A;  2P8E A;  3ZT9 A;  4IIK A;  3W43 A;  3ZVU B;  2JFT A;  3FXM A;  3EQ2 A;  3KE6 A;  3NMV B;  3UJG B;  5ITI A;  4RAF A;  4JND A;  2POM A;  2Y09 A;  3UJK A;  5F1M A;  2J86 A;  3FXL A;  4LGB B;  2IQ1 A;  5JO2 B;  4WVO B;  3QN1 B;  3FXO A;  3NMT B;  3W45 A;  2PK0 A;  3N3C A;  3KB3 B;  4IIP A;  3RT0 A;  2J82 A;  4LGA B;  4DA1 A;  3T9Q A;  4RAG A; 
#chains in the Genus database with same CATH homology
 2POP A;  4RA2 A;  3JRQ A;  1TXO A;  2JFS A;  3MQ3 A;  3RNR A;  5JO1 B;  4DS8 B;  3W42 A;  3PU9 A;  2PNQ A;  3FXJ A;  2ISN A;  2CM1 A;  4N0G A;  1A6Q A;  2IRM A;  4YZH A;  3W44 A;  3F79 A;  3NMN B;  2XZV A;  3KDJ B;  2V06 A;  3W41 A;  4OIC B;  2JFR A;  3ES2 A;  3T91 A;  5D2U A;  3D8K A;  2I44 A;  2J4O A;  4YZG A;  3W40 A;  4LA7 B;  3UJL B;  2I0O A;  4LG5 B;  3FXK A;  2P8E A;  3ZT9 A;  3W43 A;  3ZVU B;  2JFT A;  3FXM A;  3EQ2 A;  3KE6 A;  3NMV B;  3UJG B;  5ITI A;  4RAF A;  4JND A;  2POM A;  2Y09 A;  3UJK A;  5F1M A;  2J86 A;  3FXL A;  4LGB B;  2IQ1 A;  5JO2 B;  4WVO B;  3QN1 B;  3FXO A;  3NMT B;  3W45 A;  2PK0 A;  3N3C A;  3KB3 B;  3RT0 A;  2J82 A;  4LGA B;  4DA1 A;  3T9Q A;  4RAG A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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3W40A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations