3W43 | Genus

Total Genus 64

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	64
sequence length	199
structure length	199
Chain Sequence	MIQVEENEHIQTLVYQLNKEGKSICGDSFFMKADDKELICAVADGLGSGSLANESSAAIKDLVENYASEDVESIIERCNQAMKNKRGATASILKINFEQRQFTYCSVGNVRFILHSPSGESFYPLPISGYLSGKPQKYKTHTATYEKGSKFIIHTDGLNVPDIRSHLKKGQSVEEISNSLKMYTTSRKDDLTYILGQLS

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 199 atoms

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199 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Hydrolase
source organism	Bacillus subtilis
publication title	Structure of the RsbX phosphatase involved in the general stress response of Bacillus subtilis pubmed doi rcsb
molecule keywords	Phosphoserine phosphatase RsbX
total genus	64
structure length	199
sequence length	199
ec nomenclature	ec 3.1.3.3: Phosphoserine phosphatase.
pdb deposition date	2013-01-04

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF07228	SpoIIE	Stage II sporulation protein E (SpoIIE)

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.60.40.10	Alpha Beta	4-Layer Sandwich	Phosphatase 2c; domain 1	PPM-type phosphatase domain	3w43A00

3W41A 3NMVB 3W40A 3ES2A 3UJKA 3NMTB 2CM1A 4WVOB 3FXLA 4LG5B 4LGAB 3UJLB 4RAGA 5JO2B 4YZGA 3FXMA 2JFSA 3JRQA 5ITIA 2POMA 2JFTA 3QN1B 3W43A 3W42A 3KDJB 3T9QA 2J82A 4JNDA 1TXOA 2POPA 5D2UA 2PK0A 3KE6A 1A6QA 4LGBB 2J86A 3RT0A 3NMNB 3MQ3A 4N0GA 2IQ1A 3ZT9A 2IRMA 2PNQA 3F79A 3EQ2A 4OICB 3KB3B 5JO1B 3D8KA 3T91A 2P8EA 2I44A 3N3CA 2V06A 4YZHA 2J4OA 3FXOA 4RAFA 2Y09A 4RA2A 3W45A 4DA1A 2XZVA 3FXJA 2I0OA 2JFRA 4LA7B 3ZVUB 4DS8B 3RNRA 3UJGB 3W44A 5F1MA 3PU9A 2ISNA 3FXKA
chains in the Genus database with same CATH superfamily

3W41A 3NMVB 3W40A 3ES2A 3UJKA 3NMTB 2CM1A 4WVOB 3FXLA 4LG5B 4LGAB 3UJLB 4RAGA 5JO2B 4YZGA 3FXMA 2JFSA 3JRQA 5ITIA 2POMA 2JFTA 3QN1B 3W43A 3W42A 3KDJB 3T9QA 2J82A 4JNDA 1TXOA 2POPA 4IIKA 5D2UA 2PK0A 3KE6A 1A6QA 4LGBB 2J86A 3RT0A 3NMNB 3MQ3A 4N0GA 2IQ1A 3ZT9A 2IRMA 2PNQA 3F79A 3EQ2A 4OICB 3KB3B 5JO1B 3D8KA 3T91A 2P8EA 2I44A 3N3CA 2V06A 4YZHA 2J4OA 3FXOA 4RAFA 2Y09A 4RA2A 3W45A 4DA1A 2XZVA 3FXJA 2I0OA 2JFRA 4IIPA 4LA7B 3ZVUB 4DS8B 3RNRA 3UJGB 3W44A 5F1MA 3PU9A 2ISNA 3FXKA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3W41 A;  3NMV B;  3W40 A;  3ES2 A;  3UJK A;  3NMT B;  2CM1 A;  4WVO B;  3FXL A;  4LG5 B;  4LGA B;  3UJL B;  4RAG A;  5JO2 B;  4YZG A;  3FXM A;  2JFS A;  3JRQ A;  5ITI A;  2POM A;  2JFT A;  3QN1 B;  3W43 A;  3W42 A;  3KDJ B;  3T9Q A;  2J82 A;  4JND A;  1TXO A;  2POP A;  5D2U A;  2PK0 A;  3KE6 A;  1A6Q A;  4LGB B;  2J86 A;  3RT0 A;  3NMN B;  3MQ3 A;  4N0G A;  2IQ1 A;  3ZT9 A;  2IRM A;  2PNQ A;  3F79 A;  3EQ2 A;  4OIC B;  3KB3 B;  5JO1 B;  3D8K A;  3T91 A;  2P8E A;  2I44 A;  3N3C A;  2V06 A;  4YZH A;  2J4O A;  3FXO A;  4RAF A;  2Y09 A;  4RA2 A;  3W45 A;  4DA1 A;  2XZV A;  3FXJ A;  2I0O A;  2JFR A;  4LA7 B;  3ZVU B;  4DS8 B;  3RNR A;  3UJG B;  3W44 A;  5F1M A;  3PU9 A;  2ISN A;  3FXK A; 
#chains in the Genus database with same CATH topology
 3W41 A;  3NMV B;  3W40 A;  3ES2 A;  3UJK A;  3NMT B;  2CM1 A;  4WVO B;  3FXL A;  4LG5 B;  4LGA B;  3UJL B;  4RAG A;  5JO2 B;  4YZG A;  3FXM A;  2JFS A;  3JRQ A;  5ITI A;  2POM A;  2JFT A;  3QN1 B;  3W43 A;  3W42 A;  3KDJ B;  3T9Q A;  2J82 A;  4JND A;  1TXO A;  2POP A;  4IIK A;  5D2U A;  2PK0 A;  3KE6 A;  1A6Q A;  4LGB B;  2J86 A;  3RT0 A;  3NMN B;  3MQ3 A;  4N0G A;  2IQ1 A;  3ZT9 A;  2IRM A;  2PNQ A;  3F79 A;  3EQ2 A;  4OIC B;  3KB3 B;  5JO1 B;  3D8K A;  3T91 A;  2P8E A;  2I44 A;  3N3C A;  2V06 A;  4YZH A;  2J4O A;  3FXO A;  4RAF A;  2Y09 A;  4RA2 A;  3W45 A;  4DA1 A;  2XZV A;  3FXJ A;  2I0O A;  2JFR A;  4IIP A;  4LA7 B;  3ZVU B;  4DS8 B;  3RNR A;  3UJG B;  3W44 A;  5F1M A;  3PU9 A;  2ISN A;  3FXK A; 
#chains in the Genus database with same CATH homology
 3W41 A;  3NMV B;  3W40 A;  3ES2 A;  3UJK A;  3NMT B;  2CM1 A;  4WVO B;  3FXL A;  4LG5 B;  4LGA B;  3UJL B;  4RAG A;  5JO2 B;  4YZG A;  3FXM A;  2JFS A;  3JRQ A;  5ITI A;  2POM A;  2JFT A;  3QN1 B;  3W43 A;  3W42 A;  3KDJ B;  3T9Q A;  2J82 A;  4JND A;  1TXO A;  2POP A;  5D2U A;  2PK0 A;  3KE6 A;  1A6Q A;  4LGB B;  2J86 A;  3RT0 A;  3NMN B;  3MQ3 A;  4N0G A;  2IQ1 A;  3ZT9 A;  2IRM A;  2PNQ A;  3F79 A;  3EQ2 A;  4OIC B;  3KB3 B;  5JO1 B;  3D8K A;  3T91 A;  2P8E A;  2I44 A;  3N3C A;  2V06 A;  4YZH A;  2J4O A;  3FXO A;  4RAF A;  2Y09 A;  4RA2 A;  3W45 A;  4DA1 A;  2XZV A;  3FXJ A;  2I0O A;  2JFR A;  4LA7 B;  3ZVU B;  4DS8 B;  3RNR A;  3UJG B;  3W44 A;  5F1M A;  3PU9 A;  2ISN A;  3FXK A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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3W43A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations