3W44 | Genus

Total Genus 56

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	56
sequence length	199
structure length	199
Chain Sequence	MIQVEENEHIQTLVYQLNKEGKSICGDSFFMKADDKELICAVADGLGSGSLANESSAAIKDLVENYASEDVESIIERCNQAMKNKRGATASILKINFEQRQFTYCSVGNVRFILHSPSGESFYPLPISGYLSGKPQKYKTHTATYEKGSKFIIHTDGLNVPDIRSHLKKGQSVEEISNSLKMYTTSRKDDLTYILGQLS

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 199 atoms

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199 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Hydrolase
source organism	Bacillus subtilis
publication title	Structure of the RsbX phosphatase involved in the general stress response of Bacillus subtilis pubmed doi rcsb
molecule keywords	Phosphoserine phosphatase RsbX
total genus	56
structure length	199
sequence length	199
chains with identical sequence	B
ec nomenclature	ec 3.1.3.3: Phosphoserine phosphatase.
pdb deposition date	2013-01-04

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF07228	SpoIIE	Stage II sporulation protein E (SpoIIE)

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.60.40.10	Alpha Beta	4-Layer Sandwich	Phosphatase 2c; domain 1	PPM-type phosphatase domain	3w44A00

3FXMA 4JNDA 3ZT9A 3KB3B 3D8KA 4DS8B 2POPA 3NMVB 3W41A 3T9QA 3W43A 3W42A 5ITIA 2I0OA 3MQ3A 5F1MA 2IQ1A 4LG5B 3W44A 4RAGA 3FXKA 3F79A 3PU9A 2XZVA 2Y09A 3KDJB 3NMNB 3UJLB 2J82A 3W40A 3FXJA 4YZGA 3RNRA 3T91A 3EQ2A 2JFTA 4WVOB 2J86A 2CM1A 4YZHA 3FXLA 4LGAB 3QN1B 1TXOA 3JRQA 4RA2A 3UJGB 3KE6A 2J4OA 3N3CA 2PK0A 4RAFA 4OICB 4LA7B 2JFRA 3ES2A 2IRMA 2V06A 2JFSA 2I44A 3FXOA 2P8EA 2POMA 1A6QA 3ZVUB 3W45A 5D2UA 3RT0A 4LGBB 2ISNA 4DA1A 4N0GA 3UJKA 2PNQA 5JO1B 3NMTB 5JO2B
chains in the Genus database with same CATH superfamily

4IIPA 3FXMA 4JNDA 3ZT9A 3KB3B 3D8KA 4DS8B 2POPA 3NMVB 3W41A 3T9QA 4IIKA 3W43A 3W42A 5ITIA 2I0OA 3MQ3A 5F1MA 2IQ1A 4LG5B 3W44A 4RAGA 3FXKA 3F79A 3PU9A 2XZVA 2Y09A 3KDJB 3NMNB 3UJLB 2J82A 3W40A 3FXJA 4YZGA 3RNRA 3T91A 3EQ2A 2JFTA 4WVOB 2J86A 2CM1A 4YZHA 3FXLA 4LGAB 3QN1B 1TXOA 3JRQA 4RA2A 3UJGB 3KE6A 2J4OA 3N3CA 2PK0A 4RAFA 4OICB 4LA7B 2JFRA 3ES2A 2IRMA 2V06A 2JFSA 2I44A 3FXOA 2P8EA 2POMA 1A6QA 3ZVUB 3W45A 5D2UA 3RT0A 4LGBB 2ISNA 4DA1A 4N0GA 3UJKA 2PNQA 5JO1B 3NMTB 5JO2B
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3FXM A;  4JND A;  3ZT9 A;  3KB3 B;  3D8K A;  4DS8 B;  2POP A;  3NMV B;  3W41 A;  3T9Q A;  3W43 A;  3W42 A;  5ITI A;  2I0O A;  3MQ3 A;  5F1M A;  2IQ1 A;  4LG5 B;  3W44 A;  4RAG A;  3FXK A;  3F79 A;  3PU9 A;  2XZV A;  2Y09 A;  3KDJ B;  3NMN B;  3UJL B;  2J82 A;  3W40 A;  3FXJ A;  4YZG A;  3RNR A;  3T91 A;  3EQ2 A;  2JFT A;  4WVO B;  2J86 A;  2CM1 A;  4YZH A;  3FXL A;  4LGA B;  3QN1 B;  1TXO A;  3JRQ A;  4RA2 A;  3UJG B;  3KE6 A;  2J4O A;  3N3C A;  2PK0 A;  4RAF A;  4OIC B;  4LA7 B;  2JFR A;  3ES2 A;  2IRM A;  2V06 A;  2JFS A;  2I44 A;  3FXO A;  2P8E A;  2POM A;  1A6Q A;  3ZVU B;  3W45 A;  5D2U A;  3RT0 A;  4LGB B;  2ISN A;  4DA1 A;  4N0G A;  3UJK A;  2PNQ A;  5JO1 B;  3NMT B;  5JO2 B; 
#chains in the Genus database with same CATH topology
 4IIP A;  3FXM A;  4JND A;  3ZT9 A;  3KB3 B;  3D8K A;  4DS8 B;  2POP A;  3NMV B;  3W41 A;  3T9Q A;  4IIK A;  3W43 A;  3W42 A;  5ITI A;  2I0O A;  3MQ3 A;  5F1M A;  2IQ1 A;  4LG5 B;  3W44 A;  4RAG A;  3FXK A;  3F79 A;  3PU9 A;  2XZV A;  2Y09 A;  3KDJ B;  3NMN B;  3UJL B;  2J82 A;  3W40 A;  3FXJ A;  4YZG A;  3RNR A;  3T91 A;  3EQ2 A;  2JFT A;  4WVO B;  2J86 A;  2CM1 A;  4YZH A;  3FXL A;  4LGA B;  3QN1 B;  1TXO A;  3JRQ A;  4RA2 A;  3UJG B;  3KE6 A;  2J4O A;  3N3C A;  2PK0 A;  4RAF A;  4OIC B;  4LA7 B;  2JFR A;  3ES2 A;  2IRM A;  2V06 A;  2JFS A;  2I44 A;  3FXO A;  2P8E A;  2POM A;  1A6Q A;  3ZVU B;  3W45 A;  5D2U A;  3RT0 A;  4LGB B;  2ISN A;  4DA1 A;  4N0G A;  3UJK A;  2PNQ A;  5JO1 B;  3NMT B;  5JO2 B; 
#chains in the Genus database with same CATH homology
 3FXM A;  4JND A;  3ZT9 A;  3KB3 B;  3D8K A;  4DS8 B;  2POP A;  3NMV B;  3W41 A;  3T9Q A;  3W43 A;  3W42 A;  5ITI A;  2I0O A;  3MQ3 A;  5F1M A;  2IQ1 A;  4LG5 B;  3W44 A;  4RAG A;  3FXK A;  3F79 A;  3PU9 A;  2XZV A;  2Y09 A;  3KDJ B;  3NMN B;  3UJL B;  2J82 A;  3W40 A;  3FXJ A;  4YZG A;  3RNR A;  3T91 A;  3EQ2 A;  2JFT A;  4WVO B;  2J86 A;  2CM1 A;  4YZH A;  3FXL A;  4LGA B;  3QN1 B;  1TXO A;  3JRQ A;  4RA2 A;  3UJG B;  3KE6 A;  2J4O A;  3N3C A;  2PK0 A;  4RAF A;  4OIC B;  4LA7 B;  2JFR A;  3ES2 A;  2IRM A;  2V06 A;  2JFS A;  2I44 A;  3FXO A;  2P8E A;  2POM A;  1A6Q A;  3ZVU B;  3W45 A;  5D2U A;  3RT0 A;  4LGB B;  2ISN A;  4DA1 A;  4N0G A;  3UJK A;  2PNQ A;  5JO1 B;  3NMT B;  5JO2 B;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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3W44A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations