3W44 | Genus

Total Genus 56

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	56
sequence length	199
structure length	199
Chain Sequence	MIQVEENEHIQTLVYQLNKEGKSICGDSFFMKADDKELICAVADGLGSGSLANESSAAIKDLVENYASEDVESIIERCNQAMKNKRGATASILKINFEQRQFTYCSVGNVRFILHSPSGESFYPLPISGYLSGKPQKYKTHTATYEKGSKFIIHTDGLNVPDIRSHLKKGQSVEEISNSLKMYTTSRKDDLTYILGQLS

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 199 atoms

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199 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Hydrolase
source organism	Bacillus subtilis
publication title	Structure of the RsbX phosphatase involved in the general stress response of Bacillus subtilis pubmed doi rcsb
molecule keywords	Phosphoserine phosphatase RsbX
total genus	56
structure length	199
sequence length	199
chains with identical sequence	B
ec nomenclature	ec 3.1.3.3: Phosphoserine phosphatase.
pdb deposition date	2013-01-04

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF07228	SpoIIE	Stage II sporulation protein E (SpoIIE)

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.60.40.10	Alpha Beta	4-Layer Sandwich	Phosphatase 2c; domain 1	PPM-type phosphatase domain	3w44A00

3D8KA 3W42A 2J4OA 2J82A 3T91A 3UJLB 3EQ2A 5JO1B 3ZT9A 2POPA 4WVOB 3MQ3A 2I44A 4RAGA 3KB3B 2IRMA 4LG5B 4OICB 4LGAB 3FXMA 2POMA 3KDJB 4DS8B 3PU9A 3RT0A 4N0GA 2PNQA 3W44A 3FXKA 4YZHA 3UJKA 2P8EA 4LGBB 3F79A 3NMNB 3RNRA 3W45A 3ES2A 3NMTB 3UJGB 3KE6A 4YZGA 3ZVUB 3W43A 5ITIA 2CM1A 3T9QA 2J86A 2JFTA 4LA7B 4DA1A 2I0OA 1TXOA 2JFSA 1A6QA 2XZVA 2JFRA 3FXJA 5F1MA 5D2UA 2Y09A 3JRQA 2ISNA 3FXOA 4RA2A 4RAFA 4JNDA 5JO2B 2V06A 2IQ1A 3QN1B 3FXLA 3N3CA 3W40A 3W41A 3NMVB 2PK0A
chains in the Genus database with same CATH superfamily

3D8KA 3W42A 2J4OA 2J82A 3T91A 3UJLB 3EQ2A 5JO1B 3ZT9A 2POPA 4WVOB 3MQ3A 2I44A 4RAGA 3KB3B 2IRMA 4LG5B 4OICB 4LGAB 3FXMA 2POMA 3KDJB 4DS8B 3PU9A 3RT0A 4N0GA 2PNQA 3W44A 3FXKA 4YZHA 3UJKA 2P8EA 4LGBB 3F79A 3NMNB 3RNRA 3W45A 3ES2A 3NMTB 3UJGB 3KE6A 4IIKA 4YZGA 3ZVUB 3W43A 5ITIA 2CM1A 3T9QA 2J86A 2JFTA 4LA7B 4DA1A 2I0OA 1TXOA 2JFSA 1A6QA 2XZVA 2JFRA 3FXJA 5F1MA 5D2UA 2Y09A 3JRQA 2ISNA 3FXOA 4RA2A 4RAFA 4JNDA 5JO2B 2V06A 2IQ1A 3QN1B 3FXLA 3N3CA 4IIPA 3W40A 3W41A 3NMVB 2PK0A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3D8K A;  3W42 A;  2J4O A;  2J82 A;  3T91 A;  3UJL B;  3EQ2 A;  5JO1 B;  3ZT9 A;  2POP A;  4WVO B;  3MQ3 A;  2I44 A;  4RAG A;  3KB3 B;  2IRM A;  4LG5 B;  4OIC B;  4LGA B;  3FXM A;  2POM A;  3KDJ B;  4DS8 B;  3PU9 A;  3RT0 A;  4N0G A;  2PNQ A;  3W44 A;  3FXK A;  4YZH A;  3UJK A;  2P8E A;  4LGB B;  3F79 A;  3NMN B;  3RNR A;  3W45 A;  3ES2 A;  3NMT B;  3UJG B;  3KE6 A;  4YZG A;  3ZVU B;  3W43 A;  5ITI A;  2CM1 A;  3T9Q A;  2J86 A;  2JFT A;  4LA7 B;  4DA1 A;  2I0O A;  1TXO A;  2JFS A;  1A6Q A;  2XZV A;  2JFR A;  3FXJ A;  5F1M A;  5D2U A;  2Y09 A;  3JRQ A;  2ISN A;  3FXO A;  4RA2 A;  4RAF A;  4JND A;  5JO2 B;  2V06 A;  2IQ1 A;  3QN1 B;  3FXL A;  3N3C A;  3W40 A;  3W41 A;  3NMV B;  2PK0 A; 
#chains in the Genus database with same CATH topology
 3D8K A;  3W42 A;  2J4O A;  2J82 A;  3T91 A;  3UJL B;  3EQ2 A;  5JO1 B;  3ZT9 A;  2POP A;  4WVO B;  3MQ3 A;  2I44 A;  4RAG A;  3KB3 B;  2IRM A;  4LG5 B;  4OIC B;  4LGA B;  3FXM A;  2POM A;  3KDJ B;  4DS8 B;  3PU9 A;  3RT0 A;  4N0G A;  2PNQ A;  3W44 A;  3FXK A;  4YZH A;  3UJK A;  2P8E A;  4LGB B;  3F79 A;  3NMN B;  3RNR A;  3W45 A;  3ES2 A;  3NMT B;  3UJG B;  3KE6 A;  4IIK A;  4YZG A;  3ZVU B;  3W43 A;  5ITI A;  2CM1 A;  3T9Q A;  2J86 A;  2JFT A;  4LA7 B;  4DA1 A;  2I0O A;  1TXO A;  2JFS A;  1A6Q A;  2XZV A;  2JFR A;  3FXJ A;  5F1M A;  5D2U A;  2Y09 A;  3JRQ A;  2ISN A;  3FXO A;  4RA2 A;  4RAF A;  4JND A;  5JO2 B;  2V06 A;  2IQ1 A;  3QN1 B;  3FXL A;  3N3C A;  4IIP A;  3W40 A;  3W41 A;  3NMV B;  2PK0 A; 
#chains in the Genus database with same CATH homology
 3D8K A;  3W42 A;  2J4O A;  2J82 A;  3T91 A;  3UJL B;  3EQ2 A;  5JO1 B;  3ZT9 A;  2POP A;  4WVO B;  3MQ3 A;  2I44 A;  4RAG A;  3KB3 B;  2IRM A;  4LG5 B;  4OIC B;  4LGA B;  3FXM A;  2POM A;  3KDJ B;  4DS8 B;  3PU9 A;  3RT0 A;  4N0G A;  2PNQ A;  3W44 A;  3FXK A;  4YZH A;  3UJK A;  2P8E A;  4LGB B;  3F79 A;  3NMN B;  3RNR A;  3W45 A;  3ES2 A;  3NMT B;  3UJG B;  3KE6 A;  4YZG A;  3ZVU B;  3W43 A;  5ITI A;  2CM1 A;  3T9Q A;  2J86 A;  2JFT A;  4LA7 B;  4DA1 A;  2I0O A;  1TXO A;  2JFS A;  1A6Q A;  2XZV A;  2JFR A;  3FXJ A;  5F1M A;  5D2U A;  2Y09 A;  3JRQ A;  2ISN A;  3FXO A;  4RA2 A;  4RAF A;  4JND A;  5JO2 B;  2V06 A;  2IQ1 A;  3QN1 B;  3FXL A;  3N3C A;  3W40 A;  3W41 A;  3NMV B;  2PK0 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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3W44A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations