3W45 | Genus

Total Genus 64

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	64
sequence length	199
structure length	199
Chain Sequence	MIQVEENEHIQTLVYQLNKEGKSICGDSFFMKADDKELICAVADGLGSGSLANESSAAIKDLVENYASEDVESIIERCNQAMKNKRGATASILKINFEQRQFTYCSVGNVRFILHSPSGESFYPLPISGYLSGKPQKYKTHTATYEKGSKFIIHTDGLNVPDIRSHLKKGQSVEEISNSLKMYTTSRKDDLTYILGQLS

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 199 atoms

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199 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Hydrolase
source organism	Bacillus subtilis
publication title	Structure of the RsbX phosphatase involved in the general stress response of Bacillus subtilis pubmed doi rcsb
molecule keywords	Phosphoserine phosphatase RsbX
total genus	64
structure length	199
sequence length	199
chains with identical sequence	B
ec nomenclature	ec 3.1.3.3: Phosphoserine phosphatase.
pdb deposition date	2013-01-04

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF07228	SpoIIE	Stage II sporulation protein E (SpoIIE)

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.60.40.10	Alpha Beta	4-Layer Sandwich	Phosphatase 2c; domain 1	PPM-type phosphatase domain	3w45A00

3D8KA 2JFSA 2J82A 3F79A 3W40A 4N0GA 4RAFA 4YZHA 4LG5B 3RT0A 3FXMA 3QN1B 4OICB 5JO1B 2PNQA 2PK0A 2ISNA 3W41A 3N3CA 3T91A 3W43A 2JFTA 4YZGA 1A6QA 3T9QA 2J4OA 5JO2B 3EQ2A 2XZVA 2P8EA 3PU9A 4LGAB 3W42A 3NMTB 3ZT9A 2J86A 3KDJB 3UJGB 3RNRA 2Y09A 2JFRA 5ITIA 4LA7B 3JRQA 3NMVB 2CM1A 2I0OA 2POMA 1TXOA 4RAGA 4DS8B 2I44A 3FXOA 3FXLA 5F1MA 3FXJA 3MQ3A 2IQ1A 2POPA 4DA1A 4LGBB 2V06A 5D2UA 2IRMA 3W45A 3NMNB 3UJLB 4RA2A 3W44A 3ES2A 3KE6A 4JNDA 3FXKA 4WVOB 3UJKA 3ZVUB 3KB3B
chains in the Genus database with same CATH superfamily

3D8KA 2JFSA 2J82A 3F79A 3W40A 4N0GA 4RAFA 4YZHA 4LG5B 3RT0A 4IIPA 3FXMA 3QN1B 4IIKA 4OICB 5JO1B 2PNQA 2PK0A 2ISNA 3W41A 3N3CA 3T91A 3W43A 2JFTA 4YZGA 1A6QA 3T9QA 2J4OA 5JO2B 3EQ2A 2XZVA 2P8EA 3PU9A 4LGAB 3W42A 3NMTB 3ZT9A 2J86A 3KDJB 3UJGB 3RNRA 2Y09A 2JFRA 5ITIA 4LA7B 3JRQA 3NMVB 2CM1A 2I0OA 2POMA 1TXOA 4RAGA 4DS8B 2I44A 3FXOA 3FXLA 5F1MA 3FXJA 3MQ3A 2IQ1A 2POPA 4DA1A 4LGBB 2V06A 5D2UA 2IRMA 3W45A 3NMNB 3UJLB 4RA2A 3W44A 3ES2A 3KE6A 4JNDA 3FXKA 4WVOB 3UJKA 3ZVUB 3KB3B
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3D8K A;  2JFS A;  2J82 A;  3F79 A;  3W40 A;  4N0G A;  4RAF A;  4YZH A;  4LG5 B;  3RT0 A;  3FXM A;  3QN1 B;  4OIC B;  5JO1 B;  2PNQ A;  2PK0 A;  2ISN A;  3W41 A;  3N3C A;  3T91 A;  3W43 A;  2JFT A;  4YZG A;  1A6Q A;  3T9Q A;  2J4O A;  5JO2 B;  3EQ2 A;  2XZV A;  2P8E A;  3PU9 A;  4LGA B;  3W42 A;  3NMT B;  3ZT9 A;  2J86 A;  3KDJ B;  3UJG B;  3RNR A;  2Y09 A;  2JFR A;  5ITI A;  4LA7 B;  3JRQ A;  3NMV B;  2CM1 A;  2I0O A;  2POM A;  1TXO A;  4RAG A;  4DS8 B;  2I44 A;  3FXO A;  3FXL A;  5F1M A;  3FXJ A;  3MQ3 A;  2IQ1 A;  2POP A;  4DA1 A;  4LGB B;  2V06 A;  5D2U A;  2IRM A;  3W45 A;  3NMN B;  3UJL B;  4RA2 A;  3W44 A;  3ES2 A;  3KE6 A;  4JND A;  3FXK A;  4WVO B;  3UJK A;  3ZVU B;  3KB3 B; 
#chains in the Genus database with same CATH topology
 3D8K A;  2JFS A;  2J82 A;  3F79 A;  3W40 A;  4N0G A;  4RAF A;  4YZH A;  4LG5 B;  3RT0 A;  4IIP A;  3FXM A;  3QN1 B;  4IIK A;  4OIC B;  5JO1 B;  2PNQ A;  2PK0 A;  2ISN A;  3W41 A;  3N3C A;  3T91 A;  3W43 A;  2JFT A;  4YZG A;  1A6Q A;  3T9Q A;  2J4O A;  5JO2 B;  3EQ2 A;  2XZV A;  2P8E A;  3PU9 A;  4LGA B;  3W42 A;  3NMT B;  3ZT9 A;  2J86 A;  3KDJ B;  3UJG B;  3RNR A;  2Y09 A;  2JFR A;  5ITI A;  4LA7 B;  3JRQ A;  3NMV B;  2CM1 A;  2I0O A;  2POM A;  1TXO A;  4RAG A;  4DS8 B;  2I44 A;  3FXO A;  3FXL A;  5F1M A;  3FXJ A;  3MQ3 A;  2IQ1 A;  2POP A;  4DA1 A;  4LGB B;  2V06 A;  5D2U A;  2IRM A;  3W45 A;  3NMN B;  3UJL B;  4RA2 A;  3W44 A;  3ES2 A;  3KE6 A;  4JND A;  3FXK A;  4WVO B;  3UJK A;  3ZVU B;  3KB3 B; 
#chains in the Genus database with same CATH homology
 3D8K A;  2JFS A;  2J82 A;  3F79 A;  3W40 A;  4N0G A;  4RAF A;  4YZH A;  4LG5 B;  3RT0 A;  3FXM A;  3QN1 B;  4OIC B;  5JO1 B;  2PNQ A;  2PK0 A;  2ISN A;  3W41 A;  3N3C A;  3T91 A;  3W43 A;  2JFT A;  4YZG A;  1A6Q A;  3T9Q A;  2J4O A;  5JO2 B;  3EQ2 A;  2XZV A;  2P8E A;  3PU9 A;  4LGA B;  3W42 A;  3NMT B;  3ZT9 A;  2J86 A;  3KDJ B;  3UJG B;  3RNR A;  2Y09 A;  2JFR A;  5ITI A;  4LA7 B;  3JRQ A;  3NMV B;  2CM1 A;  2I0O A;  2POM A;  1TXO A;  4RAG A;  4DS8 B;  2I44 A;  3FXO A;  3FXL A;  5F1M A;  3FXJ A;  3MQ3 A;  2IQ1 A;  2POP A;  4DA1 A;  4LGB B;  2V06 A;  5D2U A;  2IRM A;  3W45 A;  3NMN B;  3UJL B;  4RA2 A;  3W44 A;  3ES2 A;  3KE6 A;  4JND A;  3FXK A;  4WVO B;  3UJK A;  3ZVU B;  3KB3 B;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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3W45A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations