The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
51
|
sequence length |
264
|
structure length |
264
|
Chain Sequence |
VTHAFDDATALSFDGRQFHGQVKAEYYNMVGPFGGITAATMLKAAMSHPERLGQPLALTVNFAAPAKVAPFVIEAVPVRTNRSTQHFTLTMMQDGEVVTTATAVFGIRRESWSHTEAVMPDVPPPADVPRFVAPAPLPWMQWYHVRLIRGSAFDEVQDATTYQWMRDDPPRPLDHAALAALCDTFVPRVYVKLKRPVPIGTVTFTVYFLADPETIFRQGTNELLGVARATGFSHGYFDQIGEVWSQDGDLLATTTQLVYMKAPV
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Structural genomics, unknown function
|
| molecule keywords |
Uncharacterized protein
|
| publication title |
Crystal Structure of Conserved Protein of Unknown Function with Hot_dog Fold from Alicyclobacillus acidocaldarius
rcsb |
| source organism |
Alicyclobacillus acidocaldarius subsp. acidocaldarius
|
| total genus |
51
|
| structure length |
264
|
| sequence length |
264
|
| chains with identical sequence |
B
|
| ec nomenclature | |
| pdb deposition date | 2011-04-28 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF13622 | 4HBT_3 | Thioesterase-like superfamily |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | Roll | Thiol Ester Dehydrase; Chain A | Thiol Ester Dehydrase; Chain A |
#chains in the Genus database with same CATH superfamily 3CJY A; 3RQB A; 3BBJ A; 4R4U A; 3RD7 A; 4QFW A; 3U0A A; 4R9Z A; #chains in the Genus database with same CATH topology 1Y7U A; 2PIM A; 4MTU A; 3EXZ A; 5BUX A; 4K4B A; 2HLJ A; 3AZB A; 3DP2 A; 3E8P A; 4QD8 A; 5CPG A; 4K4C A; 5DM5 A; 2B3M A; 1S9C A; 3DP3 A; 1NJK A; 2Q78 A; 1VPM A; 2GLV A; 3LZ7 A; 2XEM A; 5HD6 A; 3NWZ A; 1ZKI A; 2VZ9 A; 4MZQ A; 2EGJ A; 2OKH A; 4QD9 A; 4RLW B; 4E3E A; 3ZH6 A; 2GLM A; 1SBK A; 5EGL A; 4AE8 A; 2F41 A; 4W78 B; 5BP2 A; 5F6R A; 3B7K A; 4QFW A; 4AE7 A; 3ZH5 A; 4FFU A; 1Q4S A; 2FUJ A; 3E29 A; 4R9Z A; 4RV2 B; 1BVQ A; 3B7J A; 3DP0 A; 4QDB A; 4ZW0 A; 3EL6 A; 4ORD A; 3AZ8 A; 2GLL A; 3KG8 A; 4RMM A; 4CL6 A; 1TBU A; 5T07 A; 4KC5 A; 4MOB A; 3DKZ A; 2EGR A; 5HMC A; 3U0A A; 3LBB A; 3P3F A; 4QDA A; 5T02 A; 2B6E A; 4RLJ A; 3KV7 A; 4GAH A; 4ZJB A; 3KVI A; 3R36 A; 5HZ4 A; 1Q4T A; 2C2I A; 3DOZ A; 3QOO A; 4HZO A; 4RLT B; 5EO2 A; 4MOC A; 3F5O A; 3R37 A; 3R3F A; 1Q4U A; 3K67 A; 3KHP A; 4WNB A; 4ZRB A; 2GLP A; 3BBJ A; 5BP3 A; 2QQP A; 3ESI A; 2QQ2 A; 3IR3 A; 3R87 A; 1WM6 A; 2PFC A; 4B0B A; 4I45 A; 3TEA A; 4K4A A; 2VZ8 A; 3P2Q A; 2GVH A; 4NCP A; 2QWZ A; 2CY9 A; 2Q2B A; 3HRR A; 2O6T A; 5EP5 A; 4A0X A; 3D6L A; 4RLW A; 2CWZ A; 4OOC A; 5BUW A; 1OHF A; 4XY5 A; 3CJY A; 3HM0 A; 4M20 A; 2W3X A; 2O5U A; 3E1E A; 3KW1 A; 4W78 A; 3WEW A; 5BUY A; 1PSU A; 1VI8 A; 2V1O A; 1MKA A; 4I82 A; 3CF9 A; 1U1Z A; 2PZH A; 4RV2 A; 3B18 A; 2CYE A; 3BJK A; 3KG7 A; 3HDU A; 2VKZ G; 3BNV A; 1YOC A; 4RLU B; 5KL9 A; 3AZ9 A; 3P2R A; 3FRN A; 3LW3 A; 1VH5 A; 4XY6 A; 3RD7 A; 5HWF A; 1S5U A; 1WLV A; 1LO8 A; 1PN2 A; 2OWN A; 1LO7 A; 1Q6W A; 2PRX A; 3LMB A; 3R3C A; 2O6B A; 3R3B A; 4LN9 A; 4A12 A; 4ZRF A; 3KG9 A; 1C8U A; 2H4U A; 3S6P A; 3KX8 A; 3ZH7 B; 3QY3 A; 3DP1 A; 3R32 A; 1MKB A; 3P3I A; 4B0I A; 3KVU A; 3KX7 A; 3R35 A; 2HX5 A; 2F0X A; 5SZZ A; 4ZV3 A; 3D04 A; 4HZN A; 2EIS A; 4R4U A; 1SC0 A; 2EGI A; 3D6X A; 4HZP A; 2ESS A; 2DSL A; 5EGK A; 3SPS A; 3KV8 A; 1ZHG A; 4YBV A; 1IXL A; 2UV8 G; 2OIW A; 5E1V A; 3ED0 A; 1Z54 A; 3R3A A; 4GAK A; 5EO4 A; 4B0C A; 3OML A; 4I83 A; 4K4D A; 4K02 A; 3KG6 A; 1J1Y A; 4I4J A; 2OAF A; 2OV9 A; 5EGJ A; 3R34 A; 4KEH A; 1YLI A; 4FQ9 A; 5SZU A; 4A0Y A; 4QD7 A; 3Q62 A; 2NUJ A; 3KVZ A; 5DIO A; 4RLU A; 3LBE A; 5HMB A; 2F3X A; 2HBO A; 3P2S A; 4U3V A; 3R3D A; 5T06 A; 3KUW A; 5BYU A; 2GF6 A; 4RLT A; 4A0Z A; 3KUV A; 3LWG A; 3HRQ A; 3HMJ G; 3KH8 A; 1T82 A; 3CF8 A; 4K00 A; 1IQ6 A; 2BI0 A; 1WN3 A; 1SH8 A; 2O6U A; 3ZH7 A; 5SZV A; 1PN4 A; 3DOY A; 1LO9 A; 5KKU A; 1VH9 A; 3F1T A; 2AV9 A; 2XFL A; 1WLU A; 4RLJ B; 5SZY A; 4B0J A; 1Z6B A; 3RQB A; 4B8U A; 3AZA A; 4H4G A; 4OOB A; 2OKI A; 3S4K A; 4K49 A; 2FS2 A; 4IEN A; 3GEK A; 3CK1 A; 4WNB B; #chains in the Genus database with same CATH homology 2VKZ G; 3KG6 A; 3FRN A; 3RD7 A; 4LN9 A; 3KG9 A; 3BBJ A; 3S6P A; 3ZH7 B; 5BP3 A; 2QQP A; 2VZ9 A; 2PFC A; 4U3V A; 3ZH6 A; 2VZ8 A; 3HRQ A; 3HMJ G; 5BP2 A; 4R4U A; 3ZH7 A; 4QFW A; 3HRR A; 3ZH5 A; 5KKU A; 4R9Z A; 4OOC A; 1OHF A; 3EL6 A; 3CJY A; 3KG8 A; 3RQB A; 2UV8 G; 4KC5 A; 5E1V A; 3U0A A; 3B18 A; 3KG7 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
