3WODE

Rna polymerase-gp39 complex
Total Genus 18

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
18
sequence length
95
structure length
95
Chain Sequence
AEPGIDKLFGMVDSKYRLTVVVAKRAQQLLRHGFKNTVLEPEERPKMQTLEGLFDDPNAETWAMKELLTGRLVFGENLVPEDRLQKEMERIYPGE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (6-11)TIV1 (3-6)EMPTYAH2 (16-33)TIV6 (76-79)AH3 (60-69)TIV2 (34-37)TVIII2 (38-41)TIV3 (35-38)TI1 (53-56)TIV4 (49-52)AH4 (82-92)TVIII1 (13-16)Updating...
connected with : NaN
molecule tags Transferase/transcription
source organism Thermus phage p23-45
publication title Structural basis for promoter specificity switching of RNA polymerase by a phage factor.
pubmed doi rcsb
molecule keywords DNA-directed RNA polymerase subunit alpha
total genus 18
structure length 95
sequence length 95
ec nomenclature ec 2.7.7.6: DNA-directed RNA polymerase.
pdb deposition date 2013-12-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
E PF01192 RNA_pol_Rpb6 RNA polymerase Rpb6
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.940.10 Alpha Beta Alpha-Beta Complex Eukaryotic RPB6 RNA polymerase subunit Eukaryotic RPB6 RNA polymerase subunit 3wodE00
3CQZF 2R93F 4XSZE 4MEYE 5C3EF 2VUMF 2WAQK 3DXJE 4G7HE 2YU9F 4JK1E 3FKIF 5IP9F 2A69E 5M5XF 3GTJF 5M5WF 1TWAF 2NVTF 4C3HF 4LJZE 1I3QF 5D4DE 1WCMF 4BY1F 5D4CE 5M3FF 3S1RF 3GTLF 3S1MF 4YFXE 1YNJK 1Y1VF 4OIRE 2R92F 1R9TF 2NVYF 2O5JE 4Q5SE 4ZH4E 5TMFE 3WODE 2NVQF 3GTPF 4A3LF 4A3BF 5E18E 4G7ZE 3I4MF 4G7OE 5IYDF 1TWHF 2JA8F 2A68E 1I6HF 2B63F 4MEXE 4XSXE 1YNNK 3RZOF 4GZYE 5IP7F 4OIOE 5TMCE 2BE5E 5FLMF 3GTOF 3PO2F 5FJ8F 4A3GF 1I6VE 5IPLE 3H3VG 1ZYRE 4A3IF 5IYBF 3GTKF 4Y7NF 4A3CF 2PMZK 4A3KF 1TWCF 4XLNE 4A3JF 3HKZK 2E2HF 2PPBE 4OIQE 4BXXF 3GTQF 4LK0E 4KN7E 4OINE 2CW0E 2NVXF 2JA7F 3S15F 4X6AF 1QKLA 4MQ9E 3GTMF 3HOVF 4YG2E 4KN4E 1IW7E 3HOWF 2E2JF 4KMUE 4Y52F 4YFNE 5IYCF 4Q4ZE 3GTGF 1SMYE 5M3MF 2JA5F 3HOXF 5C44F 4A3EF 1I50F 4LLGE 3HOYF 2JA6F 4AYBK 3S1QF 5C4JF 4C2MF 5C4XF 5E17E 5BYHE 2R7ZF 2A6EE 2WB1I 3HOUF 3S2HF 1TWFF 3EQLE 3H0GF 3S1NF 4A3DF 3HOZF 3M4OF 2Y0SI 1TWGF 3S2DF 1HQME 3S17F 3S14F 3RZDF 1K83F 2E2IF 3M3YF 4C3IF 4A3FF 4C3JF 1SFOF 4A93F 3S16F 5D4EE 3PO3F 2A6HE 3K7AF 4LK1E 4BBRF 4XLPE 4YFKE 1Y1WF 3I4NF 2O5IE 4OIPE 5M5YF 4A3MF 4BY7F 4BBSF
chains in the Genus database with same CATH superfamily
3CQZF 2R93F 2NVQE 3GTPE 4A3LE 4XSZE 4MEYE 5C3EF 2VUMF 2WAQK 4A3BE 3DXJE 4G7HE 2YU9F 4JK1E 3FKIF 3I4ME 5IP9F 5IYDE 2A69E 5M5XF 3GTJF 5M5WF 1TWHE 1TWAF 2JA8E 2NVTF 4C3HF 2B63E 4LJZE 1I3QF 3RZOE 5D4DE 1WCMF 4BY1F 5D4CE 5M3FF 5IP7E 2WAQH 3S1RF 3GTLF 3S1MF 4YFXE 1YNJK 5FLME 1Y1VF 4OIRE 3GTOE 2R92F 1R9TF 2NVYF 3PO2E 2O5JE 4Q5SE 5FJ8E 4ZH4E 5TMFE 3WODE 4A3GE 3S1ME 2NVQF 3GTPF 4A3LF 4A3IE 4A3BF 5IYBE 5E18E 3GTKE 4Y7NE 4A3CE 4A3KE 1TWCE 4A3JE 4G7ZE 3I4MF 4G7OE 5IYDF 2E2HE 1TWHF 2JA8F 2A68E 1I6HF 2B63F 4MEXE 3GTQE 4XSXE 1YNNK 4BXXE 3RZOF 2NVXE 4GZYE 5IP7F 2JA7E 3S15E 4OIOE 4X6AE 5TMCE 2BE5E 5FLMF 3GTME 3GTOF 3HOVE 1I6HE 3PO2F 2WB1H 5FJ8F 3HOWE 4A3GF 1I6VE 2E2JE 5IPLE 3H3VG 4Y52E 1ZYRE 4A3IF 5IYCE 5IYBF 3GTGE 3GTKF 4Y7NF 2Y0SH 5M3ME 2PMZK 3HOXE 5C44E 1TWCF 4XLNE 4A3JF 4A3KF 4A3EE 1I50E 2JA5E 3HKZK 2E2HF 3HOYE 2JA6E 2PPBE 4OIQE 4BXXF 3GTQF 4LK0E 3S1QE 4KN7E 5C4JE 4OINE 2CW0E 2NVXF 4C2ME 5C4XE 2JA7F 3S15F 4AYBH 2R7ZE 4X6AF 1QKLA 4MQ9E 2PMZH 3GTMF 3HOVF 4YG2E 4QIWK 3HOUE 3S2HE 4KN4E 1TWFE 1IW7E 3H0GE 3HKZH 3HOWF 3S1NE 2E2JF 4A3DE 4KMUE 3HOZE 3M4OE 4Y52F 1TWGE 4YFNE 3S2DE 3S17E 5IYCF 4Q4ZE 3GTGF 3H3VF 3S14E 1SMYE 5M3MF 3RZDE 3HOXF 5C44F 1K83E 4A3EF 2E2IE 4QIWH 2JA5F 1I50F 4LLGE 3M3YE 3HOYF 4C3IE 4A3FE 2JA6F 4C3JE 1SFOE 4AYBK 4A93E 3S16E 3S1QF 5C4JF 3PO3E 3K7AE 4BBRE 4C2MF 5C4XF 5E17E 5BYHE 1Y1WE 2R7ZF 2A6EE 2KRXA 2WB1I 5M5YE 3HOUF 3S2HF 1TWFF 4A3ME 3EQLE 3H0GF 3I4NE 4BY7E 4BBSE 3S1NF 4A3DF 3CQZE 3HOZF 3M4OF 2R93E 1EIKA 2Y0SI 1DZFA 1TWGF 5C3EE 1HQME 2VUME 3S17F 3S2DF 2YU9E 3S14F 3RZDF 1K83F 3FKIE 2E2IF 5IP9E 3M3YF 5M5XE 4C3IF 5M5WE 3GTJE 4C3JF 1TWAE 4A3FF 2NVTE 4C3HE 1SFOF 4A93F 3S16F 5D4EE 1I3QE 3PO3F 2A6HE 3K7AF 4LK1E 1WCME 4BBRF 4XLPE 5M3FE 4BY1E 4YFKE 3S1RE 1Y1WF 3I4NF 2O5IE 3GTLE 4OIPE 1Y1VE 5M5YF 4A3CF 2R92E 4A3MF 1R9TE 2NVYE 4BY7F 4BBSF
chains in the Genus database with same CATH topology
3CQZF 2R93F 4XSZE 4MEYE 5C3EF 2VUMF 2WAQK 3DXJE 4G7HE 2YU9F 4JK1E 3FKIF 5IP9F 2A69E 5M5XF 3GTJF 5M5WF 1TWAF 2NVTF 4C3HF 4LJZE 1I3QF 5D4DE 1WCMF 4BY1F 5D4CE 5M3FF 3S1RF 3GTLF 3S1MF 4YFXE 1YNJK 1Y1VF 4OIRE 2R92F 1R9TF 2NVYF 2O5JE 4Q5SE 4ZH4E 5TMFE 3WODE 2NVQF 3GTPF 4A3LF 4A3BF 5E18E 4G7ZE 3I4MF 4G7OE 5IYDF 1TWHF 2JA8F 2A68E 1I6HF 2B63F 4MEXE 4XSXE 1YNNK 3RZOF 4GZYE 5IP7F 4OIOE 5TMCE 2BE5E 5FLMF 3GTOF 3PO2F 5FJ8F 4A3GF 1I6VE 5IPLE 3H3VG 1ZYRE 4A3IF 5IYBF 3GTKF 4Y7NF 4A3CF 2PMZK 4A3KF 1TWCF 4XLNE 4A3JF 3HKZK 2E2HF 2PPBE 4OIQE 4BXXF 3GTQF 4LK0E 4KN7E 4OINE 2CW0E 2NVXF 2JA7F 3S15F 4X6AF 1QKLA 4MQ9E 3GTMF 3HOVF 4YG2E 4QIWK 4KN4E 1IW7E 3HOWF 2E2JF 4KMUE 4Y52F 4YFNE 5IYCF 4Q4ZE 3GTGF 1SMYE 5M3MF 2JA5F 3HOXF 5C44F 4A3EF 1I50F 4LLGE 3HOYF 2JA6F 4AYBK 3S1QF 5C4JF 4C2MF 5C4XF 5E17E 5BYHE 2R7ZF 2A6EE 2KRXA 2WB1I 3HOUF 3S2HF 1TWFF 3EQLE 3H0GF 3S1NF 4A3DF 3HOZF 3M4OF 2Y0SI 1TWGF 3S2DF 1HQME 3S17F 3S14F 3RZDF 1K83F 2E2IF 3M3YF 4C3IF 4A3FF 4C3JF 1SFOF 4A93F 3S16F 5D4EE 3PO3F 2A6HE 3K7AF 4LK1E 4BBRF 4XLPE 4YFKE 1Y1WF 3I4NF 2O5IE 4OIPE 5M5YF 4A3MF 4BY7F 4BBSF
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3CQZ F;  2R93 F;  4XSZ E;  4MEY E;  5C3E F;  2VUM F;  2WAQ K;  3DXJ E;  4G7H E;  2YU9 F;  4JK1 E;  3FKI F;  5IP9 F;  2A69 E;  5M5X F;  3GTJ F;  5M5W F;  1TWA F;  2NVT F;  4C3H F;  4LJZ E;  1I3Q F;  5D4D E;  1WCM F;  4BY1 F;  5D4C E;  5M3F F;  3S1R F;  3GTL F;  3S1M F;  4YFX E;  1YNJ K;  1Y1V F;  4OIR E;  2R92 F;  1R9T F;  2NVY F;  2O5J E;  4Q5S E;  4ZH4 E;  5TMF E;  3WOD E;  2NVQ F;  3GTP F;  4A3L F;  4A3B F;  5E18 E;  4G7Z E;  3I4M F;  4G7O E;  5IYD F;  1TWH F;  2JA8 F;  2A68 E;  1I6H F;  2B63 F;  4MEX E;  4XSX E;  1YNN K;  3RZO F;  4GZY E;  5IP7 F;  4OIO E;  5TMC E;  2BE5 E;  5FLM F;  3GTO F;  3PO2 F;  5FJ8 F;  4A3G F;  1I6V E;  5IPL E;  3H3V G;  1ZYR E;  4A3I F;  5IYB F;  3GTK F;  4Y7N F;  4A3C F;  2PMZ K;  4A3K F;  1TWC F;  4XLN E;  4A3J F;  3HKZ K;  2E2H F;  2PPB E;  4OIQ E;  4BXX F;  3GTQ F;  4LK0 E;  4KN7 E;  4OIN E;  2CW0 E;  2NVX F;  2JA7 F;  3S15 F;  4X6A F;  1QKL A;  4MQ9 E;  3GTM F;  3HOV F;  4YG2 E;  4KN4 E;  1IW7 E;  3HOW F;  2E2J F;  4KMU E;  4Y52 F;  4YFN E;  5IYC F;  4Q4Z E;  3GTG F;  1SMY E;  5M3M F;  2JA5 F;  3HOX F;  5C44 F;  4A3E F;  1I50 F;  4LLG E;  3HOY F;  2JA6 F;  4AYB K;  3S1Q F;  5C4J F;  4C2M F;  5C4X F;  5E17 E;  5BYH E;  2R7Z F;  2A6E E;  2WB1 I;  3HOU F;  3S2H F;  1TWF F;  3EQL E;  3H0G F;  3S1N F;  4A3D F;  3HOZ F;  3M4O F;  2Y0S I;  1TWG F;  3S2D F;  1HQM E;  3S17 F;  3S14 F;  3RZD F;  1K83 F;  2E2I F;  3M3Y F;  4C3I F;  4A3F F;  4C3J F;  1SFO F;  4A93 F;  3S16 F;  5D4E E;  3PO3 F;  2A6H E;  3K7A F;  4LK1 E;  4BBR F;  4XLP E;  4YFK E;  1Y1W F;  3I4N F;  2O5I E;  4OIP E;  5M5Y F;  4A3M F;  4BY7 F;  4BBS F; 
#chains in the Genus database with same CATH topology
 3CQZ F;  2R93 F;  2NVQ E;  3GTP E;  4A3L E;  4XSZ E;  4MEY E;  5C3E F;  2VUM F;  2WAQ K;  4A3B E;  3DXJ E;  4G7H E;  2YU9 F;  4JK1 E;  3FKI F;  3I4M E;  5IP9 F;  5IYD E;  2A69 E;  5M5X F;  3GTJ F;  5M5W F;  1TWH E;  1TWA F;  2JA8 E;  2NVT F;  4C3H F;  2B63 E;  4LJZ E;  1I3Q F;  3RZO E;  5D4D E;  1WCM F;  4BY1 F;  5D4C E;  5M3F F;  5IP7 E;  2WAQ H;  3S1R F;  3GTL F;  3S1M F;  4YFX E;  1YNJ K;  5FLM E;  1Y1V F;  4OIR E;  3GTO E;  2R92 F;  1R9T F;  2NVY F;  3PO2 E;  2O5J E;  4Q5S E;  5FJ8 E;  4ZH4 E;  5TMF E;  3WOD E;  4A3G E;  3S1M E;  2NVQ F;  3GTP F;  4A3L F;  4A3I E;  4A3B F;  5IYB E;  5E18 E;  3GTK E;  4Y7N E;  4A3C E;  4A3K E;  1TWC E;  4A3J E;  4G7Z E;  3I4M F;  4G7O E;  5IYD F;  2E2H E;  1TWH F;  2JA8 F;  2A68 E;  1I6H F;  2B63 F;  4MEX E;  3GTQ E;  4XSX E;  1YNN K;  4BXX E;  3RZO F;  2NVX E;  4GZY E;  5IP7 F;  2JA7 E;  3S15 E;  4OIO E;  4X6A E;  5TMC E;  2BE5 E;  5FLM F;  3GTM E;  3GTO F;  3HOV E;  1I6H E;  3PO2 F;  2WB1 H;  5FJ8 F;  3HOW E;  4A3G F;  1I6V E;  2E2J E;  5IPL E;  3H3V G;  4Y52 E;  1ZYR E;  4A3I F;  5IYC E;  5IYB F;  3GTG E;  3GTK F;  4Y7N F;  2Y0S H;  5M3M E;  2PMZ K;  3HOX E;  5C44 E;  1TWC F;  4XLN E;  4A3J F;  4A3K F;  4A3E E;  1I50 E;  2JA5 E;  3HKZ K;  2E2H F;  3HOY E;  2JA6 E;  2PPB E;  4OIQ E;  4BXX F;  3GTQ F;  4LK0 E;  3S1Q E;  4KN7 E;  5C4J E;  4OIN E;  2CW0 E;  2NVX F;  4C2M E;  5C4X E;  2JA7 F;  3S15 F;  4AYB H;  2R7Z E;  4X6A F;  1QKL A;  4MQ9 E;  2PMZ H;  3GTM F;  3HOV F;  4YG2 E;  4QIW K;  3HOU E;  3S2H E;  4KN4 E;  1TWF E;  1IW7 E;  3H0G E;  3HKZ H;  3HOW F;  3S1N E;  2E2J F;  4A3D E;  4KMU E;  3HOZ E;  3M4O E;  4Y52 F;  1TWG E;  4YFN E;  3S2D E;  3S17 E;  5IYC F;  4Q4Z E;  3GTG F;  3H3V F;  3S14 E;  1SMY E;  5M3M F;  3RZD E;  3HOX F;  5C44 F;  1K83 E;  4A3E F;  2E2I E;  4QIW H;  2JA5 F;  1I50 F;  4LLG E;  3M3Y E;  3HOY F;  4C3I E;  4A3F E;  2JA6 F;  4C3J E;  1SFO E;  4AYB K;  4A93 E;  3S16 E;  3S1Q F;  5C4J F;  3PO3 E;  3K7A E;  4BBR E;  4C2M F;  5C4X F;  5E17 E;  5BYH E;  1Y1W E;  2R7Z F;  2A6E E;  2KRX A;  2WB1 I;  5M5Y E;  3HOU F;  3S2H F;  1TWF F;  4A3M E;  3EQL E;  3H0G F;  3I4N E;  4BY7 E;  4BBS E;  3S1N F;  4A3D F;  3CQZ E;  3HOZ F;  3M4O F;  2R93 E;  1EIK A;  2Y0S I;  1DZF A;  1TWG F;  5C3E E;  1HQM E;  2VUM E;  3S17 F;  3S2D F;  2YU9 E;  3S14 F;  3RZD F;  1K83 F;  3FKI E;  2E2I F;  5IP9 E;  3M3Y F;  5M5X E;  4C3I F;  5M5W E;  3GTJ E;  4C3J F;  1TWA E;  4A3F F;  2NVT E;  4C3H E;  1SFO F;  4A93 F;  3S16 F;  5D4E E;  1I3Q E;  3PO3 F;  2A6H E;  3K7A F;  4LK1 E;  1WCM E;  4BBR F;  4XLP E;  5M3F E;  4BY1 E;  4YFK E;  3S1R E;  1Y1W F;  3I4N F;  2O5I E;  3GTL E;  4OIP E;  1Y1V E;  5M5Y F;  4A3C F;  2R92 E;  4A3M F;  1R9T E;  2NVY E;  4BY7 F;  4BBS F; 
#chains in the Genus database with same CATH homology
 3CQZ F;  2R93 F;  4XSZ E;  4MEY E;  5C3E F;  2VUM F;  2WAQ K;  3DXJ E;  4G7H E;  2YU9 F;  4JK1 E;  3FKI F;  5IP9 F;  2A69 E;  5M5X F;  3GTJ F;  5M5W F;  1TWA F;  2NVT F;  4C3H F;  4LJZ E;  1I3Q F;  5D4D E;  1WCM F;  4BY1 F;  5D4C E;  5M3F F;  3S1R F;  3GTL F;  3S1M F;  4YFX E;  1YNJ K;  1Y1V F;  4OIR E;  2R92 F;  1R9T F;  2NVY F;  2O5J E;  4Q5S E;  4ZH4 E;  5TMF E;  3WOD E;  2NVQ F;  3GTP F;  4A3L F;  4A3B F;  5E18 E;  4G7Z E;  3I4M F;  4G7O E;  5IYD F;  1TWH F;  2JA8 F;  2A68 E;  1I6H F;  2B63 F;  4MEX E;  4XSX E;  1YNN K;  3RZO F;  4GZY E;  5IP7 F;  4OIO E;  5TMC E;  2BE5 E;  5FLM F;  3GTO F;  3PO2 F;  5FJ8 F;  4A3G F;  1I6V E;  5IPL E;  3H3V G;  1ZYR E;  4A3I F;  5IYB F;  3GTK F;  4Y7N F;  4A3C F;  2PMZ K;  4A3K F;  1TWC F;  4XLN E;  4A3J F;  3HKZ K;  2E2H F;  2PPB E;  4OIQ E;  4BXX F;  3GTQ F;  4LK0 E;  4KN7 E;  4OIN E;  2CW0 E;  2NVX F;  2JA7 F;  3S15 F;  4X6A F;  1QKL A;  4MQ9 E;  3GTM F;  3HOV F;  4YG2 E;  4QIW K;  4KN4 E;  1IW7 E;  3HOW F;  2E2J F;  4KMU E;  4Y52 F;  4YFN E;  5IYC F;  4Q4Z E;  3GTG F;  1SMY E;  5M3M F;  2JA5 F;  3HOX F;  5C44 F;  4A3E F;  1I50 F;  4LLG E;  3HOY F;  2JA6 F;  4AYB K;  3S1Q F;  5C4J F;  4C2M F;  5C4X F;  5E17 E;  5BYH E;  2R7Z F;  2A6E E;  2KRX A;  2WB1 I;  3HOU F;  3S2H F;  1TWF F;  3EQL E;  3H0G F;  3S1N F;  4A3D F;  3HOZ F;  3M4O F;  2Y0S I;  1TWG F;  3S2D F;  1HQM E;  3S17 F;  3S14 F;  3RZD F;  1K83 F;  2E2I F;  3M3Y F;  4C3I F;  4A3F F;  4C3J F;  1SFO F;  4A93 F;  3S16 F;  5D4E E;  3PO3 F;  2A6H E;  3K7A F;  4LK1 E;  4BBR F;  4XLP E;  4YFK E;  1Y1W F;  3I4N F;  2O5I E;  4OIP E;  5M5Y F;  4A3M F;  4BY7 F;  4BBS F; 
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similar chains in the Genus database (?% sequence similarity)
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