4AMN | Genus

Total Genus 126

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	126
sequence length	401
structure length	384
Chain Sequence	PDHELVVCGAPDAAALTGLLTRVRAAATALSRPELTDLAAGLAAAHRGDVPARFAAAVRDADGLVAALDRALGHLAEGGRRLLDAGRGLFLVVGGPLRVGLLFPGQAAPVHADRGALGHLPAEPVDTAVAQPAIIADSLAGIRWLDRLGARPVGALGHSLGELAALSWAGALDADDTLALARARGEAMSAATEAPSGMLSLRADLAAARELAAGTGAVVAVDNGERHVVVAGTRPELDRVAEAARHAGIEATPLAVSHAFHSPLMAPAAEALRRAAGRLPWRRPERPVASTVTGAWWADEDPVEVLVRQLTGPVRFREALGLLDADLLVEVGPGRMLSALAEAAGRTAVSLDAGAASAAGMAAGTAALFAAGAVDDATPFFAGR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Transferase
source organism	Micromonospora chersina
publication title	Crystal Structure of the Acyltransferase Domain of the Iterative Polyketide Synthase in Enediyne Biosynthesis. pubmed doi rcsb
molecule keywords	DYNE8
total genus	126
structure length	384
sequence length	401
ec nomenclature
pdb deposition date	2012-03-13

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00698	Acyl_transf_1	Acyl transferase domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.40.366.20	Alpha Beta	3-Layer(aba) Sandwich	Malonyl-Coenzyme A Acyl Carrier Protein; domain 2	Malonyl-Coenzyme A Acyl Carrier Protein; domain 2	4amnA00

4AMPA 4AMMA 3TZYA 4AMOA 3TZZA 3TZXA 4AMNA 3TZWA
chains in the Genus database with same CATH superfamily

4AMPA 3QATA 2VKZG 4AMMA 2QO3A 3EZOA 2JFDA 4RL1A 3HMJG 2HG4A 3TZXA 3IM8A 2QJ3A 4AMOA 3IM9A 2PFFB 4RR5A 5CZDA 3SBMA 2G2YA 3TQEA 4AMNA 2G2OA 3TZWA 2G1HA 3R97A 3HHDA 5CZCA 4QBUA 3G87A 1MLAA 2G2ZA 2H1YA 2JFKA 3K89A 2C2NA 3HJVA 2VZ8A 3TZYA 2VZ9A 2UV8G 2QC3A 5DZ6A 3H0PA 2CUYA 3RGIA 1NM2A 3TZZA 3PTWA 5DZ7A
chains in the Genus database with same CATH topology

4AMPA 4AMMA 3TZYA 4AMOA 3TZZA 3TZXA 4AMNA 3TZWA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 4AMP A;  4AMM A;  3TZY A;  4AMO A;  3TZZ A;  3TZX A;  4AMN A;  3TZW A; 
#chains in the Genus database with same CATH topology
 4AMP A;  3QAT A;  2VKZ G;  4AMM A;  2QO3 A;  3EZO A;  2JFD A;  4RL1 A;  3HMJ G;  2HG4 A;  3TZX A;  3IM8 A;  2QJ3 A;  4AMO A;  3IM9 A;  2PFF B;  4RR5 A;  5CZD A;  3SBM A;  2G2Y A;  3TQE A;  4AMN A;  2G2O A;  3TZW A;  2G1H A;  3R97 A;  3HHD A;  5CZC A;  4QBU A;  3G87 A;  1MLA A;  2G2Z A;  2H1Y A;  2JFK A;  3K89 A;  2C2N A;  3HJV A;  2VZ8 A;  3TZY A;  2VZ9 A;  2UV8 G;  2QC3 A;  5DZ6 A;  3H0P A;  2CUY A;  3RGI A;  1NM2 A;  3TZZ A;  3PTW A;  5DZ7 A; 
#chains in the Genus database with same CATH homology
 4AMP A;  4AMM A;  3TZY A;  4AMO A;  3TZZ A;  3TZX A;  4AMN A;  3TZW A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4AMNA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations