4AMP | Genus

Total Genus 128

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	128
sequence length	401
structure length	372
Chain Sequence	PDHELVVCGAPDAAALTGLLTRVRAAATALSRPELTDLAAGLAAAHRGDVPARFAAAVRDADGLVAALDRALGHLAEGGRRLLDAGRGLFLVVGGPLRVGLLFPGQAAPVHPVDTAVAQPAIIADSLAGIRWLDRLGARPVGALGHSLGELAALSWAGALDADDTLALARARGEAMSAATEAPSGMLSLRADLAAARELAAGTGAVVAVDNGERHVVVAGTRPELDRVAEAARHAGIEATPLAVSHAFHSPLMAPAAEALRRAAGRLPWRRPERPVASTVTGAWWADEDPVEVLVRQLTGPVRFREALGLLDADLLVEVGPGRMLSALAEAAGRTAVSLDAGAASAAGMAAGTAALFAAGAVDDATPFFAGR

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Transferase
source organism	Micromonospora chersina
publication title	Crystal Structure of the Acyltransferase Domain of the Iterative Polyketide Synthase in Enediyne Biosynthesis. pubmed doi rcsb
molecule keywords	DYNE8
total genus	128
structure length	372
sequence length	401
ec nomenclature
pdb deposition date	2012-03-13

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00698	Acyl_transf_1	Acyl transferase domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.40.366.20	Alpha Beta	3-Layer(aba) Sandwich	Malonyl-Coenzyme A Acyl Carrier Protein; domain 2	Malonyl-Coenzyme A Acyl Carrier Protein; domain 2	4ampA00

3TZZA 4AMNA 4AMPA 4AMOA 4AMMA 3TZXA 3TZYA 3TZWA
chains in the Genus database with same CATH superfamily

2QO3A 2VKZG 3HHDA 3IM9A 3QATA 5CZDA 2JFKA 2QC3A 3HMJG 3K89A 2HG4A 5CZCA 1MLAA 4RL1A 2C2NA 4AMPA 3TZXA 2G2YA 3EZOA 2PFFB 3G87A 5DZ6A 4RR5A 2G2OA 2CUYA 2QJ3A 3TZZA 2H1YA 2G1HA 4AMNA 4AMOA 2UV8G 3SBMA 3TQEA 3R97A 3TZYA 2VZ8A 2VZ9A 3RGIA 4QBUA 3H0PA 4AMMA 5DZ7A 3PTWA 2G2ZA 1NM2A 3TZWA 3IM8A 2JFDA 3HJVA
chains in the Genus database with same CATH topology

3TZZA 4AMNA 4AMPA 4AMOA 4AMMA 3TZXA 3TZYA 3TZWA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 3TZZ A;  4AMN A;  4AMP A;  4AMO A;  4AMM A;  3TZX A;  3TZY A;  3TZW A; 
#chains in the Genus database with same CATH topology
 2QO3 A;  2VKZ G;  3HHD A;  3IM9 A;  3QAT A;  5CZD A;  2JFK A;  2QC3 A;  3HMJ G;  3K89 A;  2HG4 A;  5CZC A;  1MLA A;  4RL1 A;  2C2N A;  4AMP A;  3TZX A;  2G2Y A;  3EZO A;  2PFF B;  3G87 A;  5DZ6 A;  4RR5 A;  2G2O A;  2CUY A;  2QJ3 A;  3TZZ A;  2H1Y A;  2G1H A;  4AMN A;  4AMO A;  2UV8 G;  3SBM A;  3TQE A;  3R97 A;  3TZY A;  2VZ8 A;  2VZ9 A;  3RGI A;  4QBU A;  3H0P A;  4AMM A;  5DZ7 A;  3PTW A;  2G2Z A;  1NM2 A;  3TZW A;  3IM8 A;  2JFD A;  3HJV A; 
#chains in the Genus database with same CATH homology
 3TZZ A;  4AMN A;  4AMP A;  4AMO A;  4AMM A;  3TZX A;  3TZY A;  3TZW A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4AMPA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations