4AYBH

Rnap at 3.2ang
Total Genus 14
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
14
sequence length
76
structure length
76
Chain Sequence
KIDPRIHYLVPKHEVLSIDEAYKILKELGIRPEQLPWIRASDPVARSINAKPGDIIRIIRKSQLYGEVVSYRYVIS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
publication title Structural and Functional Analyses of the Interaction of Archaeal RNA Polymerase with DNA.
pubmed doi rcsb
molecule keywords DNA-DIRECTED RNA POLYMERASE
total genus 14
structure length 76
sequence length 76
ec nomenclature ec 2.7.7.6: DNA-directed RNA polymerase.
pdb deposition date 2012-06-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
H PF01191 RNA_pol_Rpb5_C RNA polymerase Rpb5, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.940.20 Alpha Beta Alpha-Beta Complex Eukaryotic RPB6 RNA polymerase subunit RPB5-like RNA polymerase subunit 4aybH00
3S15E 3K7AE 4Y52E 2YU9E 3S1NE 4BBSE 5FJ8E 2NVXE 5C4XE 3GTQE 4C3IE 2R92E 4A3GE 3FKIE 3HOZE 3S1ME 3H0GE 2E2HE 1I6HE 3S1QE 3S17E 2E2IE 5M3FE 3GTKE 2JA8E 3HOWE 2B63E 3M3YE 3GTLE 2NVQE 4C3HE 1R9TE 3S16E 4Y7NE 1TWAE 5M5XE 2JA5E 1TWCE 4AYBH 2Y0SH 5IYBE 4BY1E 2E2JE 3CQZE 3HOXE 3GTPE 4X6AE 3HOYE 4BY7E 2NVTE 5IP9E 3RZDE 3PO3E 4A3FE 3S2DE 4A3CE 1Y1VE 1DZFA 4A3JE 3GTOE 2JA6E 3HOUE 5C44E 2NVYE 3RZOE 3H3VF 2WB1H 5IYDE 2R7ZE 3M4OE 4C2ME 3S2HE 4C3JE 3GTME 1TWGE 4BBRE 4BXXE 3GTGE 5M3ME 1TWFE 2VUME 1I3QE 1EIKA 4A3BE 4A93E 3HKZH 1Y1WE 1SFOE 4A3LE 3I4ME 3I4NE 2JA7E 5IYCE 1I50E 2PMZH 5C4JE 5C3EE 4A3KE 5FLME 3PO2E 5IP7E 1K83E 3S1RE 3S14E 1TWHE 2R93E 5M5WE 4A3IE 4A3EE 4A3ME 5M5YE 4QIWH 4A3DE 2WAQH 3HOVE 3GTJE 1WCME
chains in the Genus database with same CATH superfamily
1YNJK 3HOWF 4KN7E 3S15E 3K7AE 2B63F 4Y52E 3M3YF 5TMCE 2YU9E 3GTLF 2NVQF 4C3HF 3S1NE 3H3VG 4LK1E 4BBSE 5E17E 1R9TF 4KMUE 2PMZK 5FJ8E 4MEXE 2NVXE 3S16F 5C4XE 4Y7NF 2O5IE 1TWAF 3GTQE 5M5XF 2JA5F 1TWCF 4C3IE 2R92E 4A3GE 3FKIE 3HOZE 2CW0E 3EQLE 4QIWK 4C3IF 3S1ME 3H0GE 2E2HE 4YFKE 1I6HE 3S1QE 2JA8F 3S17E 4LJZE 4G7HE 5IYBF 4OIPE 5M3FE 4XSZE 2E2IE 1I6HF 4BY1F 2JA8E 3GTKF 3GTKE 2E2JF 3HOWE 3S1QF 4GZYE 3CQZF 3HOXF 4Q5SE 2B63E 3HKZK 3GTPF 3GTLE 4BY7F 2PPBE 3M3YE 3HOYF 4X6AF 2NVQE 4C3HE 2NVTF 1R9TE 5IP9F 3RZDF 3PO3F 2O5JE 3S16E 4Y7NE 4MEYE 3S2DF 1TWAE 2A68E 5E18E 5M5XE 2JA5E 4G7OE 1TWCE 4A3CF 4A3JF 3GTOF 2JA6F 3HOUF 5C44F 2KRXA 2NVYF 3RZOF 2A69E 5IYDF 4OIQE 2R7ZF 3M4OF 4XLPE 4C2MF 4AYBH 2Y0SH 5IYBE 3S2HF 2WAQK 4C3JF 4BY1E 2E2JE 3GTMF 1HQME 1TWGF 3CQZE 4BBRF 3HOXE 4OIOE 4BXXF 3GTGF 3GTPE 3HOYE 4BY7E 4X6AE 4YG2E 2A6EE 4LK0E 2NVTE 5M3MF 1SMYE 5IP9E 1I3QF 5D4DE 4A3FE 3RZDE 2VUMF 4JK1E 3DXJE 4KN4E 3PO3E 5IPLE 4A93F 1Y1WF 4A3FF 1SFOF 3S2DE 4A3LF 3I4MF 4G7ZE 4A3CE 1Y1VE 1DZFA 4A3JE 3GTOE 2JA6E 3HOUE 3I4NF 5D4EE 5C44E 2JA7F 5BYHE 2NVYE 5TMFE 3H3VF 2WB1H 3RZOE 5IYDE 1I50F 1Y1VF 4AYBK 5IYCF 5D4CE 2R7ZE 3M4OE 4MQ9E 4C2ME 5C3EF 5C4JF 2A6HE 1QKLA 4A3KF 5FLMF 3PO2F 4C3JE 5IP7F 3S2HE 1K83F 3GTME 1TWGE 4BBRE 3S1RF 1TWHF 3S14F 4BXXE 2R93F 5M5WF 3GTGE 4A3IF 4A3EF 4YFXE 5M3ME 1TWFE 5M5YF 4A3DF 2VUME 1I3QE 1EIKA 3HOVF 1TWFF 3GTJF 1WCMF 4A3BE 4A93E 3HKZH 1Y1WE 1IW7E 1SFOE 3S15F 3K7AF 4Y52F 3I4ME 4A3LE 4Q4ZE 3WODE 2YU9F 4OINE 3I4NE 4XSXE 4A3BF 3S1NF 2JA7E 4BBSF 5IYCE 1I50E 4LLGE 5FJ8F 2PMZH 1I6VE 2NVXF 5C4JE 5C3EE 5C4XF 4XLNE 2WB1I 4A3KE 5FLME 3GTQF 3PO2E 5IP7E 1K83E 2R92F 3S1RE 1ZYRE 1TWHE 3S14E 2R93E 5M5WE 4A3GF 3FKIF 4YFNE 3HOZF 4A3IE 4A3EE 3S1MF 3H0GF 4A3ME 2Y0SI 4ZH4E 5M5YE 4QIWH 2E2HF 4A3DE 4OIRE 2WAQH 2BE5E 3HOVE 3S17F 2E2IF 1YNNK 4A3MF 5M3FF 3GTJE 1WCME
chains in the Genus database with same CATH topology
3S15E 3K7AE 4Y52E 2YU9E 3S1NE 4BBSE 5FJ8E 2NVXE 5C4XE 3GTQE 4C3IE 2R92E 4A3GE 3FKIE 3HOZE 3S1ME 3H0GE 2E2HE 1I6HE 3S1QE 3S17E 2E2IE 5M3FE 3GTKE 2JA8E 3HOWE 2B63E 3M3YE 3GTLE 2NVQE 4C3HE 1R9TE 3S16E 4Y7NE 1TWAE 5M5XE 2JA5E 1TWCE 4AYBH 2Y0SH 5IYBE 4BY1E 2E2JE 3CQZE 3HOXE 3GTPE 4X6AE 3HOYE 4BY7E 2NVTE 5IP9E 3RZDE 3PO3E 4A3FE 3S2DE 4A3CE 1Y1VE 1DZFA 4A3JE 3GTOE 2JA6E 3HOUE 5C44E 2NVYE 3RZOE 3H3VF 2WB1H 5IYDE 2R7ZE 3M4OE 4C2ME 3S2HE 4C3JE 3GTME 1TWGE 4BBRE 4BXXE 3GTGE 5M3ME 1TWFE 2VUME 1I3QE 1EIKA 4A3BE 4A93E 3HKZH 1Y1WE 1SFOE 4A3LE 3I4ME 3I4NE 2JA7E 5IYCE 1I50E 2PMZH 5C4JE 5C3EE 4A3KE 5FLME 3PO2E 5IP7E 1K83E 3S1RE 3S14E 1TWHE 2R93E 5M5WE 4A3IE 4A3EE 4A3ME 5M5YE 4QIWH 4A3DE 2WAQH 3HOVE 3GTJE 1WCME
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3S15 E;  3K7A E;  4Y52 E;  2YU9 E;  3S1N E;  4BBS E;  5FJ8 E;  2NVX E;  5C4X E;  3GTQ E;  4C3I E;  2R92 E;  4A3G E;  3FKI E;  3HOZ E;  3S1M E;  3H0G E;  2E2H E;  1I6H E;  3S1Q E;  3S17 E;  2E2I E;  5M3F E;  3GTK E;  2JA8 E;  3HOW E;  2B63 E;  3M3Y E;  3GTL E;  2NVQ E;  4C3H E;  1R9T E;  3S16 E;  4Y7N E;  1TWA E;  5M5X E;  2JA5 E;  1TWC E;  4AYB H;  2Y0S H;  5IYB E;  4BY1 E;  2E2J E;  3CQZ E;  3HOX E;  3GTP E;  4X6A E;  3HOY E;  4BY7 E;  2NVT E;  5IP9 E;  3RZD E;  3PO3 E;  4A3F E;  3S2D E;  4A3C E;  1Y1V E;  1DZF A;  4A3J E;  3GTO E;  2JA6 E;  3HOU E;  5C44 E;  2NVY E;  3RZO E;  3H3V F;  2WB1 H;  5IYD E;  2R7Z E;  3M4O E;  4C2M E;  3S2H E;  4C3J E;  3GTM E;  1TWG E;  4BBR E;  4BXX E;  3GTG E;  5M3M E;  1TWF E;  2VUM E;  1I3Q E;  1EIK A;  4A3B E;  4A93 E;  3HKZ H;  1Y1W E;  1SFO E;  4A3L E;  3I4M E;  3I4N E;  2JA7 E;  5IYC E;  1I50 E;  2PMZ H;  5C4J E;  5C3E E;  4A3K E;  5FLM E;  3PO2 E;  5IP7 E;  1K83 E;  3S1R E;  3S14 E;  1TWH E;  2R93 E;  5M5W E;  4A3I E;  4A3E E;  4A3M E;  5M5Y E;  4QIW H;  4A3D E;  2WAQ H;  3HOV E;  3GTJ E;  1WCM E; 
#chains in the Genus database with same CATH topology
 1YNJ K;  3HOW F;  4KN7 E;  3S15 E;  3K7A E;  2B63 F;  4Y52 E;  3M3Y F;  5TMC E;  2YU9 E;  3GTL F;  2NVQ F;  4C3H F;  3S1N E;  3H3V G;  4LK1 E;  4BBS E;  5E17 E;  1R9T F;  4KMU E;  2PMZ K;  5FJ8 E;  4MEX E;  2NVX E;  3S16 F;  5C4X E;  4Y7N F;  2O5I E;  1TWA F;  3GTQ E;  5M5X F;  2JA5 F;  1TWC F;  4C3I E;  2R92 E;  4A3G E;  3FKI E;  3HOZ E;  2CW0 E;  3EQL E;  4QIW K;  4C3I F;  3S1M E;  3H0G E;  2E2H E;  4YFK E;  1I6H E;  3S1Q E;  2JA8 F;  3S17 E;  4LJZ E;  4G7H E;  5IYB F;  4OIP E;  5M3F E;  4XSZ E;  2E2I E;  1I6H F;  4BY1 F;  2JA8 E;  3GTK F;  3GTK E;  2E2J F;  3HOW E;  3S1Q F;  4GZY E;  3CQZ F;  3HOX F;  4Q5S E;  2B63 E;  3HKZ K;  3GTP F;  3GTL E;  4BY7 F;  2PPB E;  3M3Y E;  3HOY F;  4X6A F;  2NVQ E;  4C3H E;  2NVT F;  1R9T E;  5IP9 F;  3RZD F;  3PO3 F;  2O5J E;  3S16 E;  4Y7N E;  4MEY E;  3S2D F;  1TWA E;  2A68 E;  5E18 E;  5M5X E;  2JA5 E;  4G7O E;  1TWC E;  4A3C F;  4A3J F;  3GTO F;  2JA6 F;  3HOU F;  5C44 F;  2KRX A;  2NVY F;  3RZO F;  2A69 E;  5IYD F;  4OIQ E;  2R7Z F;  3M4O F;  4XLP E;  4C2M F;  4AYB H;  2Y0S H;  5IYB E;  3S2H F;  2WAQ K;  4C3J F;  4BY1 E;  2E2J E;  3GTM F;  1HQM E;  1TWG F;  3CQZ E;  4BBR F;  3HOX E;  4OIO E;  4BXX F;  3GTG F;  3GTP E;  3HOY E;  4BY7 E;  4X6A E;  4YG2 E;  2A6E E;  4LK0 E;  2NVT E;  5M3M F;  1SMY E;  5IP9 E;  1I3Q F;  5D4D E;  4A3F E;  3RZD E;  2VUM F;  4JK1 E;  3DXJ E;  4KN4 E;  3PO3 E;  5IPL E;  4A93 F;  1Y1W F;  4A3F F;  1SFO F;  3S2D E;  4A3L F;  3I4M F;  4G7Z E;  4A3C E;  1Y1V E;  1DZF A;  4A3J E;  3GTO E;  2JA6 E;  3HOU E;  3I4N F;  5D4E E;  5C44 E;  2JA7 F;  5BYH E;  2NVY E;  5TMF E;  3H3V F;  2WB1 H;  3RZO E;  5IYD E;  1I50 F;  1Y1V F;  4AYB K;  5IYC F;  5D4C E;  2R7Z E;  3M4O E;  4MQ9 E;  4C2M E;  5C3E F;  5C4J F;  2A6H E;  1QKL A;  4A3K F;  5FLM F;  3PO2 F;  4C3J E;  5IP7 F;  3S2H E;  1K83 F;  3GTM E;  1TWG E;  4BBR E;  3S1R F;  1TWH F;  3S14 F;  4BXX E;  2R93 F;  5M5W F;  3GTG E;  4A3I F;  4A3E F;  4YFX E;  5M3M E;  1TWF E;  5M5Y F;  4A3D F;  2VUM E;  1I3Q E;  1EIK A;  3HOV F;  1TWF F;  3GTJ F;  1WCM F;  4A3B E;  4A93 E;  3HKZ H;  1Y1W E;  1IW7 E;  1SFO E;  3S15 F;  3K7A F;  4Y52 F;  3I4M E;  4A3L E;  4Q4Z E;  3WOD E;  2YU9 F;  4OIN E;  3I4N E;  4XSX E;  4A3B F;  3S1N F;  2JA7 E;  4BBS F;  5IYC E;  1I50 E;  4LLG E;  5FJ8 F;  2PMZ H;  1I6V E;  2NVX F;  5C4J E;  5C3E E;  5C4X F;  4XLN E;  2WB1 I;  4A3K E;  5FLM E;  3GTQ F;  3PO2 E;  5IP7 E;  1K83 E;  2R92 F;  3S1R E;  1ZYR E;  1TWH E;  3S14 E;  2R93 E;  5M5W E;  4A3G F;  3FKI F;  4YFN E;  3HOZ F;  4A3I E;  4A3E E;  3S1M F;  3H0G F;  4A3M E;  2Y0S I;  4ZH4 E;  5M5Y E;  4QIW H;  2E2H F;  4A3D E;  4OIR E;  2WAQ H;  2BE5 E;  3HOV E;  3S17 F;  2E2I F;  1YNN K;  4A3M F;  5M3F F;  3GTJ E;  1WCM E; 
#chains in the Genus database with same CATH homology
 3S15 E;  3K7A E;  4Y52 E;  2YU9 E;  3S1N E;  4BBS E;  5FJ8 E;  2NVX E;  5C4X E;  3GTQ E;  4C3I E;  2R92 E;  4A3G E;  3FKI E;  3HOZ E;  3S1M E;  3H0G E;  2E2H E;  1I6H E;  3S1Q E;  3S17 E;  2E2I E;  5M3F E;  3GTK E;  2JA8 E;  3HOW E;  2B63 E;  3M3Y E;  3GTL E;  2NVQ E;  4C3H E;  1R9T E;  3S16 E;  4Y7N E;  1TWA E;  5M5X E;  2JA5 E;  1TWC E;  4AYB H;  2Y0S H;  5IYB E;  4BY1 E;  2E2J E;  3CQZ E;  3HOX E;  3GTP E;  4X6A E;  3HOY E;  4BY7 E;  2NVT E;  5IP9 E;  3RZD E;  3PO3 E;  4A3F E;  3S2D E;  4A3C E;  1Y1V E;  1DZF A;  4A3J E;  3GTO E;  2JA6 E;  3HOU E;  5C44 E;  2NVY E;  3RZO E;  3H3V F;  2WB1 H;  5IYD E;  2R7Z E;  3M4O E;  4C2M E;  3S2H E;  4C3J E;  3GTM E;  1TWG E;  4BBR E;  4BXX E;  3GTG E;  5M3M E;  1TWF E;  2VUM E;  1I3Q E;  1EIK A;  4A3B E;  4A93 E;  3HKZ H;  1Y1W E;  1SFO E;  4A3L E;  3I4M E;  3I4N E;  2JA7 E;  5IYC E;  1I50 E;  2PMZ H;  5C4J E;  5C3E E;  4A3K E;  5FLM E;  3PO2 E;  5IP7 E;  1K83 E;  3S1R E;  3S14 E;  1TWH E;  2R93 E;  5M5W E;  4A3I E;  4A3E E;  4A3M E;  5M5Y E;  4QIW H;  4A3D E;  2WAQ H;  3HOV E;  3GTJ E;  1WCM E; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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