4DA1 | Genus

Total Genus 82

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	82
sequence length	260
structure length	257
Chain Sequence	ISLENVGCASQIGKRKENEDRFDFAQLTDEVLYFAVYDGHGGPAAADFCHTHMEKCIMDLLPKEKNLETLLTLAFLEIDKAFSSHARLSADATLLTSGTTATVALLRDGIELVVASVGDSRAILCRKGKPMKLTIDHTPERKDEKERIKKCGGFVAWNQPHVNGRLAMTRSIGDLDLKTSGVIAEPETKRIKLHHADDSFLVLTTDGINFMVNSQEICDFVNQCHDPNEAAHAVTEQAIQYGTEDNSTAVVVPFGAW

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 257 atoms

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1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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257 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Hydrolase
source organism	Homo sapiens
publication title	Structural and biochemical characterization of human mitochondrial branched-chain alpha-ketoacid dehydrogenase phosphatase. pubmed doi rcsb
molecule keywords	Protein phosphatase 1K, mitochondrial
total genus	82
structure length	257
sequence length	260
ec nomenclature	ec 3.1.3.16: Protein-serine/threonine phosphatase.
pdb deposition date	2012-01-12

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00481	PP2C	Protein phosphatase 2C

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.60.40.10	Alpha Beta	4-Layer Sandwich	Phosphatase 2c; domain 1	PPM-type phosphatase domain	4da1A00

4YZGA 3UJGB 3KE6A 3MQ3A 3W45A 3RNRA 2XZVA 4OICB 4LG5B 2CM1A 5F1MA 3KB3B 3RT0A 3FXLA 4RAGA 2POMA 2Y09A 2I0OA 3T9QA 3FXOA 4YZHA 3F79A 3NMTB 2JFSA 4RA2A 2PNQA 2IQ1A 3N3CA 3W43A 3FXJA 2J4OA 1A6QA 3JRQA 4DA1A 3UJLB 3ZVUB 4LGAB 3W42A 3EQ2A 3FXKA 2P8EA 4LA7B 2V06A 5JO1B 5ITIA 3KDJB 5JO2B 2I44A 3NMNB 3NMVB 5D2UA 3QN1B 4RAFA 4N0GA 4DS8B 3ZT9A 4WVOB 2POPA 4JNDA 3T91A 2PK0A 3D8KA 3FXMA 2J82A 3W40A 3PU9A 4LGBB 2JFTA 3UJKA 1TXOA 2IRMA 3W44A 3W41A 2JFRA 2ISNA 3ES2A 2J86A
chains in the Genus database with same CATH superfamily

4YZGA 3UJGB 3KE6A 3MQ3A 3W45A 3RNRA 2XZVA 4OICB 4LG5B 2CM1A 5F1MA 3KB3B 3RT0A 3FXLA 4RAGA 2POMA 2Y09A 2I0OA 3T9QA 3FXOA 4YZHA 3F79A 3NMTB 2JFSA 4RA2A 2PNQA 2IQ1A 3N3CA 3W43A 3FXJA 2J4OA 1A6QA 3JRQA 4DA1A 3UJLB 3ZVUB 4LGAB 3W42A 3EQ2A 3FXKA 2P8EA 4LA7B 4IIPA 2V06A 5JO1B 5ITIA 3KDJB 5JO2B 2I44A 3NMNB 3NMVB 5D2UA 3QN1B 4RAFA 4N0GA 4DS8B 3ZT9A 4WVOB 2POPA 4JNDA 3T91A 2PK0A 3D8KA 3FXMA 2J82A 3W40A 3PU9A 4LGBB 4IIKA 2JFTA 3UJKA 1TXOA 2IRMA 3W44A 3W41A 2JFRA 2ISNA 3ES2A 2J86A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 4YZG A;  3UJG B;  3KE6 A;  3MQ3 A;  3W45 A;  3RNR A;  2XZV A;  4OIC B;  4LG5 B;  2CM1 A;  5F1M A;  3KB3 B;  3RT0 A;  3FXL A;  4RAG A;  2POM A;  2Y09 A;  2I0O A;  3T9Q A;  3FXO A;  4YZH A;  3F79 A;  3NMT B;  2JFS A;  4RA2 A;  2PNQ A;  2IQ1 A;  3N3C A;  3W43 A;  3FXJ A;  2J4O A;  1A6Q A;  3JRQ A;  4DA1 A;  3UJL B;  3ZVU B;  4LGA B;  3W42 A;  3EQ2 A;  3FXK A;  2P8E A;  4LA7 B;  2V06 A;  5JO1 B;  5ITI A;  3KDJ B;  5JO2 B;  2I44 A;  3NMN B;  3NMV B;  5D2U A;  3QN1 B;  4RAF A;  4N0G A;  4DS8 B;  3ZT9 A;  4WVO B;  2POP A;  4JND A;  3T91 A;  2PK0 A;  3D8K A;  3FXM A;  2J82 A;  3W40 A;  3PU9 A;  4LGB B;  2JFT A;  3UJK A;  1TXO A;  2IRM A;  3W44 A;  3W41 A;  2JFR A;  2ISN A;  3ES2 A;  2J86 A; 
#chains in the Genus database with same CATH topology
 4YZG A;  3UJG B;  3KE6 A;  3MQ3 A;  3W45 A;  3RNR A;  2XZV A;  4OIC B;  4LG5 B;  2CM1 A;  5F1M A;  3KB3 B;  3RT0 A;  3FXL A;  4RAG A;  2POM A;  2Y09 A;  2I0O A;  3T9Q A;  3FXO A;  4YZH A;  3F79 A;  3NMT B;  2JFS A;  4RA2 A;  2PNQ A;  2IQ1 A;  3N3C A;  3W43 A;  3FXJ A;  2J4O A;  1A6Q A;  3JRQ A;  4DA1 A;  3UJL B;  3ZVU B;  4LGA B;  3W42 A;  3EQ2 A;  3FXK A;  2P8E A;  4LA7 B;  4IIP A;  2V06 A;  5JO1 B;  5ITI A;  3KDJ B;  5JO2 B;  2I44 A;  3NMN B;  3NMV B;  5D2U A;  3QN1 B;  4RAF A;  4N0G A;  4DS8 B;  3ZT9 A;  4WVO B;  2POP A;  4JND A;  3T91 A;  2PK0 A;  3D8K A;  3FXM A;  2J82 A;  3W40 A;  3PU9 A;  4LGB B;  4IIK A;  2JFT A;  3UJK A;  1TXO A;  2IRM A;  3W44 A;  3W41 A;  2JFR A;  2ISN A;  3ES2 A;  2J86 A; 
#chains in the Genus database with same CATH homology
 4YZG A;  3UJG B;  3KE6 A;  3MQ3 A;  3W45 A;  3RNR A;  2XZV A;  4OIC B;  4LG5 B;  2CM1 A;  5F1M A;  3KB3 B;  3RT0 A;  3FXL A;  4RAG A;  2POM A;  2Y09 A;  2I0O A;  3T9Q A;  3FXO A;  4YZH A;  3F79 A;  3NMT B;  2JFS A;  4RA2 A;  2PNQ A;  2IQ1 A;  3N3C A;  3W43 A;  3FXJ A;  2J4O A;  1A6Q A;  3JRQ A;  4DA1 A;  3UJL B;  3ZVU B;  4LGA B;  3W42 A;  3EQ2 A;  3FXK A;  2P8E A;  4LA7 B;  2V06 A;  5JO1 B;  5ITI A;  3KDJ B;  5JO2 B;  2I44 A;  3NMN B;  3NMV B;  5D2U A;  3QN1 B;  4RAF A;  4N0G A;  4DS8 B;  3ZT9 A;  4WVO B;  2POP A;  4JND A;  3T91 A;  2PK0 A;  3D8K A;  3FXM A;  2J82 A;  3W40 A;  3PU9 A;  4LGB B;  2JFT A;  3UJK A;  1TXO A;  2IRM A;  3W44 A;  3W41 A;  2JFR A;  2ISN A;  3ES2 A;  2J86 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4DA1A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations