4DS8 | Genus

Total Genus 91

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	91
sequence length	322
structure length	295
Chain Sequence	DCIPLWGTVSIQGNRSEMEDAFAVSPHFLKLPIKMLMSLTHLTGHFFGVYDGHGGHKVADYCRDRLHFALAEEIERIKGRQVQWDKVFTSCFLTVDGEIEGKIGRAEAVASETVGSTAVVALVCSSHIVVSNCGDSRAVLFRGKEAMPLSVDHKPDREDEYARIENAGGKVIQWQGARVFGVLAMSRSIGDRYLKPYVIPEPEVTFMPRSREDECLILASDGLWDVMNNQEVCEIARRRILMWHKKNGAPPLAERGKGIDPACQAAADYLSMLALQKGSKDNISIIVIDLKAQRK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Hormone receptor/hydrolase
source organism	Arabidopsis thaliana
publication title	Complex Structures of the Abscisic Acid Receptor PYL3/RCAR13 Reveal a Unique Regulatory Mechanism pubmed doi rcsb
molecule keywords	Abscisic acid receptor PYL3
total genus	91
structure length	295
sequence length	322
ec nomenclature	ec 3.1.3.16: Protein-serine/threonine phosphatase.
pdb deposition date	2012-02-18

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
B	PF00481	PP2C	Protein phosphatase 2C

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.60.40.10	Alpha Beta	4-Layer Sandwich	Phosphatase 2c; domain 1	PPM-type phosphatase domain	4ds8B00

3RT0A 2P8EA 3FXMA 5JO2B 3QN1B 3W42A 2POMA 3W45A 4OICB 4WVOB 4JNDA 3ZVUB 3KB3B 3F79A 3FXLA 3PU9A 3T91A 3W40A 4LA7B 2V06A 4YZHA 2ISNA 2Y09A 3FXOA 2XZVA 3NMVB 2J4OA 5D2UA 3KE6A 2PNQA 3MQ3A 3JRQA 2JFTA 1A6QA 3NMNB 3EQ2A 4DA1A 3FXJA 3D8KA 3NMTB 4RA2A 2IQ1A 4RAGA 5JO1B 2CM1A 3KDJB 4N0GA 3UJLB 3RNRA 1TXOA 2J82A 4YZGA 3FXKA 4LGAB 2I44A 2J86A 2PK0A 3N3CA 2JFSA 3UJKA 3W43A 5F1MA 4LG5B 4LGBB 3T9QA 3UJGB 3ZT9A 3W44A 2I0OA 2POPA 5ITIA 2JFRA 2IRMA 4RAFA 3W41A 4DS8B 3ES2A
chains in the Genus database with same CATH superfamily

3RT0A 2P8EA 3FXMA 5JO2B 3QN1B 3W42A 2POMA 3W45A 4OICB 4WVOB 4JNDA 3ZVUB 3KB3B 3F79A 3FXLA 3PU9A 3T91A 3W40A 4LA7B 2V06A 4IIPA 4YZHA 2ISNA 2Y09A 3FXOA 2XZVA 3NMVB 2J4OA 5D2UA 3KE6A 2PNQA 3MQ3A 3JRQA 2JFTA 1A6QA 3NMNB 3EQ2A 4DA1A 3FXJA 3D8KA 3NMTB 4RA2A 2IQ1A 4RAGA 5JO1B 2CM1A 3KDJB 4N0GA 3UJLB 3RNRA 4IIKA 1TXOA 2J82A 4YZGA 3FXKA 4LGAB 2I44A 2J86A 2PK0A 3N3CA 2JFSA 3UJKA 3W43A 5F1MA 4LG5B 4LGBB 3T9QA 3UJGB 3ZT9A 3W44A 2I0OA 2POPA 5ITIA 2JFRA 2IRMA 4RAFA 3W41A 4DS8B 3ES2A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3RT0 A;  2P8E A;  3FXM A;  5JO2 B;  3QN1 B;  3W42 A;  2POM A;  3W45 A;  4OIC B;  4WVO B;  4JND A;  3ZVU B;  3KB3 B;  3F79 A;  3FXL A;  3PU9 A;  3T91 A;  3W40 A;  4LA7 B;  2V06 A;  4YZH A;  2ISN A;  2Y09 A;  3FXO A;  2XZV A;  3NMV B;  2J4O A;  5D2U A;  3KE6 A;  2PNQ A;  3MQ3 A;  3JRQ A;  2JFT A;  1A6Q A;  3NMN B;  3EQ2 A;  4DA1 A;  3FXJ A;  3D8K A;  3NMT B;  4RA2 A;  2IQ1 A;  4RAG A;  5JO1 B;  2CM1 A;  3KDJ B;  4N0G A;  3UJL B;  3RNR A;  1TXO A;  2J82 A;  4YZG A;  3FXK A;  4LGA B;  2I44 A;  2J86 A;  2PK0 A;  3N3C A;  2JFS A;  3UJK A;  3W43 A;  5F1M A;  4LG5 B;  4LGB B;  3T9Q A;  3UJG B;  3ZT9 A;  3W44 A;  2I0O A;  2POP A;  5ITI A;  2JFR A;  2IRM A;  4RAF A;  3W41 A;  4DS8 B;  3ES2 A; 
#chains in the Genus database with same CATH topology
 3RT0 A;  2P8E A;  3FXM A;  5JO2 B;  3QN1 B;  3W42 A;  2POM A;  3W45 A;  4OIC B;  4WVO B;  4JND A;  3ZVU B;  3KB3 B;  3F79 A;  3FXL A;  3PU9 A;  3T91 A;  3W40 A;  4LA7 B;  2V06 A;  4IIP A;  4YZH A;  2ISN A;  2Y09 A;  3FXO A;  2XZV A;  3NMV B;  2J4O A;  5D2U A;  3KE6 A;  2PNQ A;  3MQ3 A;  3JRQ A;  2JFT A;  1A6Q A;  3NMN B;  3EQ2 A;  4DA1 A;  3FXJ A;  3D8K A;  3NMT B;  4RA2 A;  2IQ1 A;  4RAG A;  5JO1 B;  2CM1 A;  3KDJ B;  4N0G A;  3UJL B;  3RNR A;  4IIK A;  1TXO A;  2J82 A;  4YZG A;  3FXK A;  4LGA B;  2I44 A;  2J86 A;  2PK0 A;  3N3C A;  2JFS A;  3UJK A;  3W43 A;  5F1M A;  4LG5 B;  4LGB B;  3T9Q A;  3UJG B;  3ZT9 A;  3W44 A;  2I0O A;  2POP A;  5ITI A;  2JFR A;  2IRM A;  4RAF A;  3W41 A;  4DS8 B;  3ES2 A; 
#chains in the Genus database with same CATH homology
 3RT0 A;  2P8E A;  3FXM A;  5JO2 B;  3QN1 B;  3W42 A;  2POM A;  3W45 A;  4OIC B;  4WVO B;  4JND A;  3ZVU B;  3KB3 B;  3F79 A;  3FXL A;  3PU9 A;  3T91 A;  3W40 A;  4LA7 B;  2V06 A;  4YZH A;  2ISN A;  2Y09 A;  3FXO A;  2XZV A;  3NMV B;  2J4O A;  5D2U A;  3KE6 A;  2PNQ A;  3MQ3 A;  3JRQ A;  2JFT A;  1A6Q A;  3NMN B;  3EQ2 A;  4DA1 A;  3FXJ A;  3D8K A;  3NMT B;  4RA2 A;  2IQ1 A;  4RAG A;  5JO1 B;  2CM1 A;  3KDJ B;  4N0G A;  3UJL B;  3RNR A;  1TXO A;  2J82 A;  4YZG A;  3FXK A;  4LGA B;  2I44 A;  2J86 A;  2PK0 A;  3N3C A;  2JFS A;  3UJK A;  3W43 A;  5F1M A;  4LG5 B;  4LGB B;  3T9Q A;  3UJG B;  3ZT9 A;  3W44 A;  2I0O A;  2POP A;  5ITI A;  2JFR A;  2IRM A;  4RAF A;  3W41 A;  4DS8 B;  3ES2 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4DS8B

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations