4EBR | Genus

Total Genus 36

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	36
sequence length	167
structure length	157
Chain Sequence	GSMIPYQEWHSQLQSLYDSQIFHNWALCQDVHLNDEKDGLLLRLIPTRQLLLNHIELYLTYSKVYNEPLLLLRIWEEKSIDGIPMTKLMLPTDIESLLDVQGKFQLGLDTIINLEGSVWYSFHPCDTSCIVGDQAEFMSTYLRRWVSIFIFSWLGYE

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Structure of the autophagic E2 enzyme Atg10 pubmed doi rcsb
molecule keywords	Ubiquitin-like-conjugating enzyme ATG10
molecule tags	Ligase
source organism	Saccharomyces cerevisiae
total genus	36
structure length	157
sequence length	167
chains with identical sequence	B
ec nomenclature	ec 6.3.2.-:
pdb deposition date	2012-03-24

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF03987	Autophagy_act_C	Autophagocytosis associated protein, active-site domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.1460.50	Alpha Beta	2-Layer Sandwich	Yope Regulator; Chain: A,	Yope Regulator; Chain: A,	4ebrA00

2DYTA 4EBRA 3VX7B 4GSLC 3VX8B 2LPUA
chains in the Genus database with same CATH superfamily

2P9UD 2P9PD 3ULED 4EBRA 2P9ND 3TU3A 3CXJA 3ULEF 2P9UF 1K6ZA 2P9PF 3DWLD 2P9NF 3EPUA 4JD2D 1S28A 3UKUD 3DWLF 3UKUF 2OD0A 4JD2F 4AKXA 2MQDA 4GF3A 2BSIA 1XKPB 1RY9A 4H5BA 3VX7B 4GSLC 1N5BA 1TYQD 1JYOA 2FM8A 1L2WA 1U2VD 1TYQF 3DXMD 4XEID 2P9LD 2BSJA 3KXYA 3RSED 1U2VF 2XGAA 2P9LF 2KC5A 3DXMF 3RSEF 2BHOA 3UKRD 1K3EA 2P9SD 1K8KD 4G6TA 4XEIF 1TTWA 2LPUA 2P9ID 2P9SF 4JMFB 3UKRF 1K8KF 1K3SA 2BSHA 2DYTA 1XKPC 2P9IF 2P9KD 2P9KF 3VX8B 3DXKD 3DXKF 2PLGA 1JYAA
chains in the Genus database with same CATH topology

2P9UD 2P9PD 3ULED 4EBRA 2P9ND 3TU3A 3CXJA 3ULEF 2P9UF 1K6ZA 2P9PF 3DWLD 2P9NF 3EPUA 4JD2D 1S28A 3UKUD 3DWLF 3UKUF 4JD2F 4AKXA 2MQDA 4GF3A 2BSIA 1XKPB 1RY9A 4H5BA 3VX7B 4GSLC 1N5BA 1TYQD 1JYOA 2FM8A 1L2WA 1U2VD 1TYQF 3DXMD 4XEID 2P9LD 2BSJA 3KXYA 3RSED 1U2VF 2XGAA 2P9LF 2KC5A 3DXMF 3RSEF 2BHOA 3UKRD 1K3EA 2P9SD 1K8KD 4G6TA 4XEIF 1TTWA 2LPUA 2P9ID 2P9SF 4JMFB 3UKRF 1K8KF 1K3SA 2BSHA 2DYTA 1XKPC 2P9IF 2P9KD 2P9KF 3VX8B 3DXKD 3DXKF 2PLGA 1JYAA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2DYT A;  4EBR A;  3VX7 B;  4GSL C;  3VX8 B;  2LPU A; 
#chains in the Genus database with same CATH topology
 2P9U D;  2P9P D;  3ULE D;  4EBR A;  2P9N D;  3TU3 A;  3CXJ A;  3ULE F;  2P9U F;  1K6Z A;  2P9P F;  3DWL D;  2P9N F;  3EPU A;  4JD2 D;  1S28 A;  3UKU D;  3DWL F;  3UKU F;  2OD0 A;  4JD2 F;  4AKX A;  2MQD A;  4GF3 A;  2BSI A;  1XKP B;  1RY9 A;  4H5B A;  3VX7 B;  4GSL C;  1N5B A;  1TYQ D;  1JYO A;  2FM8 A;  1L2W A;  1U2V D;  1TYQ F;  3DXM D;  4XEI D;  2P9L D;  2BSJ A;  3KXY A;  3RSE D;  1U2V F;  2XGA A;  2P9L F;  2KC5 A;  3DXM F;  3RSE F;  2BHO A;  3UKR D;  1K3E A;  2P9S D;  1K8K D;  4G6T A;  4XEI F;  1TTW A;  2LPU A;  2P9I D;  2P9S F;  4JMF B;  3UKR F;  1K8K F;  1K3S A;  2BSH A;  2DYT A;  1XKP C;  2P9I F;  2P9K D;  2P9K F;  3VX8 B;  3DXK D;  3DXK F;  2PLG A;  1JYA A; 
#chains in the Genus database with same CATH homology
 2P9U D;  2P9P D;  3ULE D;  4EBR A;  2P9N D;  3TU3 A;  3CXJ A;  3ULE F;  2P9U F;  1K6Z A;  2P9P F;  3DWL D;  2P9N F;  3EPU A;  4JD2 D;  1S28 A;  3UKU D;  3DWL F;  3UKU F;  4JD2 F;  4AKX A;  2MQD A;  4GF3 A;  2BSI A;  1XKP B;  1RY9 A;  4H5B A;  3VX7 B;  4GSL C;  1N5B A;  1TYQ D;  1JYO A;  2FM8 A;  1L2W A;  1U2V D;  1TYQ F;  3DXM D;  4XEI D;  2P9L D;  2BSJ A;  3KXY A;  3RSE D;  1U2V F;  2XGA A;  2P9L F;  2KC5 A;  3DXM F;  3RSE F;  2BHO A;  3UKR D;  1K3E A;  2P9S D;  1K8K D;  4G6T A;  4XEI F;  1TTW A;  2LPU A;  2P9I D;  2P9S F;  4JMF B;  3UKR F;  1K8K F;  1K3S A;  2BSH A;  2DYT A;  1XKP C;  2P9I F;  2P9K D;  2P9K F;  3VX8 B;  3DXK D;  3DXK F;  2PLG A;  1JYA A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4EBRA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations