The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
39
|
sequence length |
285
|
structure length |
186
|
Chain Sequence |
TFLTTGQITPEEFVQAGDYLAHMFPTWKWNEESSDISYRDFLPKNKQFLIIRKVPADKRAEQAIDDIDELIQDMEIKMAQERYYDLYIAYSTSYRVPKMYIVGFNSNGSPLSPEQMFEDISADYRTKTATIEKLPFYKNSVLSVSIHPCKHANVMKILLDKLRVDQYLIVFLKFITSVTPSIQHDY
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Noncanonical E2 recruitment by the autophagy E1 revealed by Atg7-Atg3 and Atg7-Atg10 structures.
pubmed doi rcsb |
| molecule keywords |
Ubiquitin-like modifier-activating enzyme ATG7
|
| molecule tags |
Protein transport
|
| source organism |
Saccharomyces cerevisiae
|
| total genus |
39
|
| structure length |
186
|
| sequence length |
285
|
| chains with identical sequence |
D
|
| ec nomenclature | |
| pdb deposition date | 2012-08-27 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| C | PF03986 | Autophagy_N | Autophagocytosis associated protein (Atg3), N-terminal domain |
| C | PF03987 | Autophagy_act_C | Autophagocytosis associated protein, active-site domain |
| C | PF10381 | Autophagy_C | Autophagocytosis associated protein C-terminal |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | Yope Regulator; Chain: A, | Yope Regulator; Chain: A, |
#chains in the Genus database with same CATH superfamily 2DYT A; 2LPU A; 4GSL C; 3VX8 B; 4EBR A; 3VX7 B; #chains in the Genus database with same CATH topology 2P9U D; 2DYT A; 3VX8 B; 2BSI A; 1JYA A; 2BSH A; 2MQD A; 2FM8 A; 1N5B A; 2KC5 A; 1JYO A; 2P9I F; 2P9I D; 4AKX A; 1K8K F; 1K8K D; 3CXJ A; 2OD0 A; 2LPU A; 2P9N D; 2P9P F; 2P9U F; 2P9P D; 2P9N F; 4XEI D; 4XEI F; 4JD2 F; 4JD2 D; 4G6T A; 4EBR A; 1XKP B; 3KXY A; 4GF3 A; 3VX7 B; 2XGA A; 1TYQ F; 1U2V D; 1TYQ D; 1S28 A; 2BSJ A; 1U2V F; 3DXM F; 3DXM D; 4JMF B; 3ULE F; 3ULE D; 4H5B A; 3DXK D; 3UKR D; 3TU3 A; 2P9K D; 2PLG A; 1RY9 A; 2P9S F; 2P9S D; 2P9K F; 3DWL F; 3DXK F; 3DWL D; 3EPU A; 1XKP C; 1K3S A; 3UKU D; 3UKU F; 1K6Z A; 1K3E A; 4GSL C; 2P9L D; 3RSE D; 1L2W A; 1TTW A; 2P9L F; 3UKR F; 3RSE F; 2BHO A; #chains in the Genus database with same CATH homology 2P9U D; 2DYT A; 3VX8 B; 2BSI A; 1JYA A; 2BSH A; 2MQD A; 2FM8 A; 1N5B A; 2KC5 A; 1JYO A; 2P9I F; 2P9I D; 4AKX A; 1K8K F; 1K8K D; 3CXJ A; 2LPU A; 2P9N D; 2P9P F; 2P9U F; 2P9P D; 2P9N F; 4XEI D; 4XEI F; 4JD2 F; 4JD2 D; 4G6T A; 4EBR A; 1XKP B; 3KXY A; 4GF3 A; 3VX7 B; 2XGA A; 1TYQ F; 1U2V D; 1TYQ D; 1S28 A; 2BSJ A; 1U2V F; 3DXM F; 3DXM D; 4JMF B; 3ULE F; 3ULE D; 4H5B A; 3DXK D; 3UKR D; 3TU3 A; 2P9K D; 2PLG A; 1RY9 A; 2P9S F; 2P9S D; 2P9K F; 3DWL F; 3DXK F; 3DWL D; 3EPU A; 1XKP C; 1K3S A; 3UKU D; 3UKU F; 1K6Z A; 1K3E A; 4GSL C; 2P9L D; 3RSE D; 1L2W A; 1TTW A; 2P9L F; 3UKR F; 3RSE F; 2BHO A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
