4IIK | Genus

Total Genus 98

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	98
sequence length	314
structure length	303
Chain Sequence	MRSIITQICNGVLHGQSYQSGSNDLDKGNSEIFASSLFVHLNEQGKEIKDSDDKIVIGYTKDGMAFQIVVDGFYGCERQAVFSFIDNYVLPLIDNFSLDLTRYPDSKKVTESLIHTIYSLRSKHAPLAEFTMSLCVTYQKDEQLFCAGFGIGDTGIAIKRNEGTIEQLVCHTEVDGFKDAFDNYSSANIDLVIERNSVFNTKVMPGDELVGYTYVPPMLEMTEKEFEVEKRIVRHLNLDPGNFDDKDPLFSQLLQVVKSKQKQLVEQAKETGQIQRFGDDFTVGRLVIPDQLLINQLRIHALS

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Hydrolase
source organism	Legionella pneumophila
publication title	Structural Basis for Rab1 De-AMPylation by the Legionella pneumophila Effector SidD pubmed doi rcsb
molecule keywords	Adenosine monophosphate-protein hydrolase SidD
total genus	98
structure length	303
sequence length	314
ec nomenclature	ec 3.1.4.-:
pdb deposition date	2012-12-20

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.60.40.20	Alpha Beta	4-Layer Sandwich	Phosphatase 2c; domain 1	Phosphatase 2c; domain 1	4iikA00

4IIPA 4IIKA
chains in the Genus database with same CATH superfamily

2Y09A 4RAFA 3FXOA 2PK0A 4YZGA 3FXMA 3D8KA 3T9QA 3UJKA 3UJLB 3FXLA 3NMVB 3EQ2A 2J82A 4IIKA 5ITIA 2POPA 5JO1B 2CM1A 3W42A 2JFRA 5F1MA 3RNRA 3KB3B 4DS8B 2IRMA 5JO2B 3ES2A 4LGAB 3UJGB 4IIPA 3NMNB 3F79A 4DA1A 2J86A 4WVOB 3KDJB 3JRQA 3FXJA 3KE6A 4YZHA 3W44A 2ISNA 2IQ1A 2V06A 3W45A 4JNDA 1A6QA 4OICB 3W43A 3W40A 1TXOA 3QN1B 3PU9A 3FXKA 4N0GA 2P8EA 2PNQA 3ZT9A 4LG5B 3MQ3A 2JFTA 4RA2A 3N3CA 4LGBB 2POMA 2J4OA 3W41A 3ZVUB 3NMTB 3RT0A 5D2UA 4LA7B 4RAGA 2I44A 3T91A 2XZVA 2JFSA 2I0OA
chains in the Genus database with same CATH topology

4IIPA 4IIKA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 4IIP A;  4IIK A; 
#chains in the Genus database with same CATH topology
 2Y09 A;  4RAF A;  3FXO A;  2PK0 A;  4YZG A;  3FXM A;  3D8K A;  3T9Q A;  3UJK A;  3UJL B;  3FXL A;  3NMV B;  3EQ2 A;  2J82 A;  4IIK A;  5ITI A;  2POP A;  5JO1 B;  2CM1 A;  3W42 A;  2JFR A;  5F1M A;  3RNR A;  3KB3 B;  4DS8 B;  2IRM A;  5JO2 B;  3ES2 A;  4LGA B;  3UJG B;  4IIP A;  3NMN B;  3F79 A;  4DA1 A;  2J86 A;  4WVO B;  3KDJ B;  3JRQ A;  3FXJ A;  3KE6 A;  4YZH A;  3W44 A;  2ISN A;  2IQ1 A;  2V06 A;  3W45 A;  4JND A;  1A6Q A;  4OIC B;  3W43 A;  3W40 A;  1TXO A;  3QN1 B;  3PU9 A;  3FXK A;  4N0G A;  2P8E A;  2PNQ A;  3ZT9 A;  4LG5 B;  3MQ3 A;  2JFT A;  4RA2 A;  3N3C A;  4LGB B;  2POM A;  2J4O A;  3W41 A;  3ZVU B;  3NMT B;  3RT0 A;  5D2U A;  4LA7 B;  4RAG A;  2I44 A;  3T91 A;  2XZV A;  2JFS A;  2I0O A; 
#chains in the Genus database with same CATH homology
 4IIP A;  4IIK A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4IIKA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN