4IIK | Genus

Total Genus 98

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	98
sequence length	314
structure length	303
Chain Sequence	MRSIITQICNGVLHGQSYQSGSNDLDKGNSEIFASSLFVHLNEQGKEIKDSDDKIVIGYTKDGMAFQIVVDGFYGCERQAVFSFIDNYVLPLIDNFSLDLTRYPDSKKVTESLIHTIYSLRSKHAPLAEFTMSLCVTYQKDEQLFCAGFGIGDTGIAIKRNEGTIEQLVCHTEVDGFKDAFDNYSSANIDLVIERNSVFNTKVMPGDELVGYTYVPPMLEMTEKEFEVEKRIVRHLNLDPGNFDDKDPLFSQLLQVVKSKQKQLVEQAKETGQIQRFGDDFTVGRLVIPDQLLINQLRIHALS

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 303 atoms

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303 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Hydrolase
source organism	Legionella pneumophila
publication title	Structural Basis for Rab1 De-AMPylation by the Legionella pneumophila Effector SidD pubmed doi rcsb
molecule keywords	Adenosine monophosphate-protein hydrolase SidD
total genus	98
structure length	303
sequence length	314
ec nomenclature	ec 3.1.4.-:
pdb deposition date	2012-12-20

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.60.40.20	Alpha Beta	4-Layer Sandwich	Phosphatase 2c; domain 1	Phosphatase 2c; domain 1	4iikA00

4IIPA 4IIKA
chains in the Genus database with same CATH superfamily

3KB3B 2ISNA 3FXOA 3FXKA 4YZGA 3T91A 2IQ1A 2J82A 3UJGB 2J4OA 2IRMA 4LGAB 3KDJB 2V06A 2I0OA 3NMVB 1A6QA 3NMTB 3ZVUB 2JFSA 2P8EA 2J86A 3EQ2A 3FXLA 4RAFA 3UJLB 3QN1B 2POMA 2PK0A 3F79A 3FXJA 3JRQA 5ITIA 3FXMA 3ZT9A 5JO1B 3W42A 3KE6A 4N0GA 2PNQA 4LGBB 2I44A 5D2UA 4RAGA 3W44A 3ES2A 5F1MA 4IIKA 4YZHA 3T9QA 3W45A 2JFTA 5JO2B 3RNRA 3NMNB 2XZVA 4WVOB 3D8KA 4DA1A 3W40A 3PU9A 1TXOA 4OICB 3W43A 4LA7B 4JNDA 2CM1A 4DS8B 4RA2A 4LG5B 3UJKA 2POPA 2Y09A 2JFRA 3N3CA 4IIPA 3RT0A 3W41A 3MQ3A
chains in the Genus database with same CATH topology

4IIPA 4IIKA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 4IIP A;  4IIK A; 
#chains in the Genus database with same CATH topology
 3KB3 B;  2ISN A;  3FXO A;  3FXK A;  4YZG A;  3T91 A;  2IQ1 A;  2J82 A;  3UJG B;  2J4O A;  2IRM A;  4LGA B;  3KDJ B;  2V06 A;  2I0O A;  3NMV B;  1A6Q A;  3NMT B;  3ZVU B;  2JFS A;  2P8E A;  2J86 A;  3EQ2 A;  3FXL A;  4RAF A;  3UJL B;  3QN1 B;  2POM A;  2PK0 A;  3F79 A;  3FXJ A;  3JRQ A;  5ITI A;  3FXM A;  3ZT9 A;  5JO1 B;  3W42 A;  3KE6 A;  4N0G A;  2PNQ A;  4LGB B;  2I44 A;  5D2U A;  4RAG A;  3W44 A;  3ES2 A;  5F1M A;  4IIK A;  4YZH A;  3T9Q A;  3W45 A;  2JFT A;  5JO2 B;  3RNR A;  3NMN B;  2XZV A;  4WVO B;  3D8K A;  4DA1 A;  3W40 A;  3PU9 A;  1TXO A;  4OIC B;  3W43 A;  4LA7 B;  4JND A;  2CM1 A;  4DS8 B;  4RA2 A;  4LG5 B;  3UJK A;  2POP A;  2Y09 A;  2JFR A;  3N3C A;  4IIP A;  3RT0 A;  3W41 A;  3MQ3 A; 
#chains in the Genus database with same CATH homology
 4IIP A;  4IIK A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4IIKA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN