4IIP | Genus

Total Genus 102

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	102
sequence length	315
structure length	305
Chain Sequence	MRSIITQICNGVLHGQSYQSGSNDLDKGNSEIFASSLFVHLNEQGKEIKDSDDKIVIGYTKDGMAFQIVVAGFYGCERQAVFSFIDNYVLPLIDNFSLDLTRYPDSKKVTESLIHTIYSLRSKHAPLAEFTMSLCVTYQKDEQLFCAGFGIGDTGIAIKRNEGTIEQLVCHTEVDGFKDAFDNYSSANIDLVIERNSVFNTKVMPGDELVGYTYVPPMLEMTEKEFEVETKRIVRHLNLDPGNFDDKDPLFSQLLQVVKSKQKQLVEQAKETGQIQRFGDDFTVGRLVIPDQLLINQLRIHALSH

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 305 atoms

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Hydrolase
source organism	Legionella pneumophila
publication title	Structural Basis for Rab1 De-AMPylation by the Legionella pneumophila Effector SidD pubmed doi rcsb
molecule keywords	Adenosine monophosphate-protein hydrolase SidD
total genus	102
structure length	305
sequence length	315
ec nomenclature	ec 3.1.4.-:
pdb deposition date	2012-12-20

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.60.40.20	Alpha Beta	4-Layer Sandwich	Phosphatase 2c; domain 1	Phosphatase 2c; domain 1	4iipA00

4IIKA 4IIPA
chains in the Genus database with same CATH superfamily

2JFTA 3EQ2A 4IIPA 4IIKA 3ES2A 3ZT9A 4WVOB 3W43A 3T9QA 5JO2B 3W45A 2PK0A 2CM1A 3FXOA 2XZVA 4RA2A 3PU9A 3F79A 3W40A 2V06A 3NMTB 5ITIA 3FXJA 5JO1B 3FXLA 3NMNB 3ZVUB 5D2UA 4N0GA 2I44A 4LA7B 4LGAB 3N3CA 5F1MA 3MQ3A 2IRMA 4DA1A 3KE6A 4RAGA 3T91A 3W42A 3KDJB 2Y09A 3W44A 4YZHA 3FXKA 2P8EA 3KB3B 2J4OA 1A6QA 3UJLB 2J86A 2PNQA 3JRQA 4DS8B 3RNRA 2IQ1A 3W41A 4OICB 2I0OA 3FXMA 4RAFA 1TXOA 3NMVB 2POMA 3UJKA 3QN1B 4YZGA 3UJGB 3D8KA 3RT0A 4LG5B 2JFSA 2JFRA 4JNDA 2POPA 2ISNA 4LGBB 2J82A
chains in the Genus database with same CATH topology

4IIKA 4IIPA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 4IIK A;  4IIP A; 
#chains in the Genus database with same CATH topology
 2JFT A;  3EQ2 A;  4IIP A;  4IIK A;  3ES2 A;  3ZT9 A;  4WVO B;  3W43 A;  3T9Q A;  5JO2 B;  3W45 A;  2PK0 A;  2CM1 A;  3FXO A;  2XZV A;  4RA2 A;  3PU9 A;  3F79 A;  3W40 A;  2V06 A;  3NMT B;  5ITI A;  3FXJ A;  5JO1 B;  3FXL A;  3NMN B;  3ZVU B;  5D2U A;  4N0G A;  2I44 A;  4LA7 B;  4LGA B;  3N3C A;  5F1M A;  3MQ3 A;  2IRM A;  4DA1 A;  3KE6 A;  4RAG A;  3T91 A;  3W42 A;  3KDJ B;  2Y09 A;  3W44 A;  4YZH A;  3FXK A;  2P8E A;  3KB3 B;  2J4O A;  1A6Q A;  3UJL B;  2J86 A;  2PNQ A;  3JRQ A;  4DS8 B;  3RNR A;  2IQ1 A;  3W41 A;  4OIC B;  2I0O A;  3FXM A;  4RAF A;  1TXO A;  3NMV B;  2POM A;  3UJK A;  3QN1 B;  4YZG A;  3UJG B;  3D8K A;  3RT0 A;  4LG5 B;  2JFS A;  2JFR A;  4JND A;  2POP A;  2ISN A;  4LGB B;  2J82 A; 
#chains in the Genus database with same CATH homology
 4IIK A;  4IIP A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4IIPA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN