4JD2 | Genus

Total Genus 78

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	78
sequence length	283
structure length	283
Chain Sequence	MILLEVNNRIIEETLALKFENAAAGNKPEAVEVTFADFDGVLYHISNPNGDKTKVMVSISLKFYKELQAHGADELLKRVYGSYLVNPESGYNVSLLYDLENLPASKDSIVHQAGMLKRNCFASVFEKYFQFQEEGKEGENRAVIHYRDDETMYVESKKDRVTVVFSTVFKDDDDVVIGKVFMQEFKEGRRASHTAPQVLFSHREPPLELKDTDAAVGDNIGYITFVLFPRHTNASARDNTINLIHTFRDYLHYHIKCSKAYIHTRMRAKTSDFLKVLNRARPD

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 283 atoms

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1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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283 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Structural basis for regulation of Arp2/3 complex by GMF. pubmed doi rcsb
molecule keywords	Actin-related protein 3
molecule tags	Structural protein
total genus	78
structure length	283
sequence length	283
ec nomenclature
pdb deposition date	2013-02-22

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
D	PF04045	P34-Arc	Arp2/3 complex, 34 kD subunit p34-Arc

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.1460.20	Alpha Beta	2-Layer Sandwich	Yope Regulator; Chain: A,	Yope Regulator; Chain: A,	4jd2D02
3.30.1460.20	Alpha Beta	2-Layer Sandwich	Yope Regulator; Chain: A,	Yope Regulator; Chain: A,	4jd2D01

1U2VD 2P9PD 2P9ND 2P9SF 2P9UD 3DXKF 3UKRF 3DWLF 1TYQF 2P9SD 3DWLD 3RSEF 3UKRD 3DXKD 3ULEF 1K8KF 4XEIF 1TYQD 3RSED 3UKUF 2P9LF 2P9IF 3ULED 1K8KD 2P9KF 4XEID 3DXMF 4JD2F 1U2VF 3UKUD 2P9NF 4JD2D 2P9PF 2P9LD 2P9ID 2P9UF 2P9KD 3DXMD
chains in the Genus database with same CATH superfamily

1U2VD 2BSJA 3VX8B 2MQDA 2P9PD 2P9ND 3TU3A 2BHOA 2P9SF 1JYOA 2P9UD 3DXKF 3UKRF 3DWLF 3VX7B 1K3EA 3KXYA 1TYQF 1S28A 2PLGA 4AKXA 1K6ZA 2DYTA 4H5BA 4JMFB 4EBRA 2P9SD 3DWLD 3CXJA 4GF3A 3RSEF 3UKRD 1N5BA 2BSHA 2LPUA 2XGAA 3DXKD 3EPUA 1K8KF 3ULEF 4XEIF 1TYQD 3RSED 1JYAA 1XKPB 3UKUF 2P9LF 2P9IF 3ULED 2P9UF 1K8KD 1L2WA 2P9KF 4GSLC 3DXMF 4XEID 1RY9A 1K3SA 4JD2F 4G6TA 1U2VF 3UKUD 2BSIA 2P9NF 4JD2D 2P9PF 2P9LD 2OD0A 1XKPC 2KC5A 2P9ID 1TTWA 2P9KD 3DXMD 2FM8A
chains in the Genus database with same CATH topology

1U2VD 2BSJA 3VX8B 2MQDA 2P9PD 2P9ND 3TU3A 2BHOA 2P9SF 1JYOA 2P9UD 3DXKF 3UKRF 3DWLF 3VX7B 1K3EA 3KXYA 1TYQF 1S28A 2PLGA 4AKXA 1K6ZA 2DYTA 4H5BA 4JMFB 4EBRA 2P9SD 3DWLD 3CXJA 4GF3A 3RSEF 3UKRD 1N5BA 2BSHA 2LPUA 2XGAA 3DXKD 3EPUA 1K8KF 3ULEF 4XEIF 1TYQD 3RSED 1JYAA 1XKPB 3UKUF 2P9LF 2P9IF 3ULED 2P9UF 1K8KD 1L2WA 2P9KF 4GSLC 3DXMF 4XEID 1RY9A 1K3SA 4JD2F 4G6TA 1U2VF 3UKUD 2BSIA 2P9NF 4JD2D 2P9PF 2P9LD 2P9ID 1XKPC 2KC5A 1TTWA 2P9KD 3DXMD 2FM8A
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 1U2V D;  2P9P D;  2P9N D;  2P9S F;  2P9U D;  3DXK F;  3UKR F;  3DWL F;  1TYQ F;  2P9S D;  3DWL D;  3RSE F;  3UKR D;  3DXK D;  3ULE F;  1K8K F;  4XEI F;  1TYQ D;  3RSE D;  3UKU F;  2P9L F;  2P9I F;  3ULE D;  1K8K D;  2P9K F;  4XEI D;  3DXM F;  4JD2 F;  1U2V F;  3UKU D;  2P9N F;  4JD2 D;  2P9P F;  2P9L D;  2P9I D;  2P9U F;  2P9K D;  3DXM D; 
#chains in the Genus database with same CATH topology
 1U2V D;  2BSJ A;  3VX8 B;  2MQD A;  2P9P D;  2P9N D;  3TU3 A;  2BHO A;  2P9S F;  1JYO A;  2P9U D;  3DXK F;  3UKR F;  3DWL F;  3VX7 B;  1K3E A;  3KXY A;  1TYQ F;  1S28 A;  2PLG A;  4AKX A;  1K6Z A;  2DYT A;  4H5B A;  4JMF B;  4EBR A;  2P9S D;  3DWL D;  3CXJ A;  4GF3 A;  3RSE F;  3UKR D;  1N5B A;  2BSH A;  2LPU A;  2XGA A;  3DXK D;  3EPU A;  1K8K F;  3ULE F;  4XEI F;  1TYQ D;  3RSE D;  1JYA A;  1XKP B;  3UKU F;  2P9L F;  2P9I F;  3ULE D;  2P9U F;  1K8K D;  1L2W A;  2P9K F;  4GSL C;  3DXM F;  4XEI D;  1RY9 A;  1K3S A;  4JD2 F;  4G6T A;  1U2V F;  3UKU D;  2BSI A;  2P9N F;  4JD2 D;  2P9P F;  2P9L D;  2OD0 A;  1XKP C;  2KC5 A;  2P9I D;  1TTW A;  2P9K D;  3DXM D;  2FM8 A; 
#chains in the Genus database with same CATH homology
 1U2V D;  2BSJ A;  3VX8 B;  2MQD A;  2P9P D;  2P9N D;  3TU3 A;  2BHO A;  2P9S F;  1JYO A;  2P9U D;  3DXK F;  3UKR F;  3DWL F;  3VX7 B;  1K3E A;  3KXY A;  1TYQ F;  1S28 A;  2PLG A;  4AKX A;  1K6Z A;  2DYT A;  4H5B A;  4JMF B;  4EBR A;  2P9S D;  3DWL D;  3CXJ A;  4GF3 A;  3RSE F;  3UKR D;  1N5B A;  2BSH A;  2LPU A;  2XGA A;  3DXK D;  3EPU A;  1K8K F;  3ULE F;  4XEI F;  1TYQ D;  3RSE D;  1JYA A;  1XKP B;  3UKU F;  2P9L F;  2P9I F;  3ULE D;  2P9U F;  1K8K D;  1L2W A;  2P9K F;  4GSL C;  3DXM F;  4XEI D;  1RY9 A;  1K3S A;  4JD2 F;  4G6T A;  1U2V F;  3UKU D;  2BSI A;  2P9N F;  4JD2 D;  2P9P F;  2P9L D;  2P9I D;  1XKP C;  2KC5 A;  1TTW A;  2P9K D;  3DXM D;  2FM8 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4JD2D

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations