4LA7 | Genus

Total Genus 96

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	96
sequence length	320
structure length	297
Chain Sequence	CIPLWGVSIQGNRSEMEDAFAVSPHFLKLPIKMLMHLTGHFFGVYDGHGGHKVADYCRDRLHFALAEEIERIKDELCRQVQWDKVFTSCFLTVDGEIEGKIGRAVDKVLEAVASETVGSTAVVALVCSSHIVVSNCGDSRAVLFRGKEAMPLSVDHKPDREDEYARIENAGGKVIQWQGARVFGVLAMSRSIGDRYLKPYVIPEPEVTFMPRSREDECLILASDGLWDVMNNQEVCEIARRRILMWHKKNGAPPLAERGKGIDPACQAAADYLSMLALQKGSKDNISIIVIDLKAQR

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Hydrolase/receptor/inhibitor
source organism	Arabidopsis thaliana
publication title	Activation of dimeric ABA receptors elicits guard cell closure, ABA-regulated gene expression, and drought tolerance. pubmed doi rcsb
molecule keywords	Abscisic acid receptor PYL2
total genus	96
structure length	297
sequence length	320
ec nomenclature	ec 3.1.3.16: Protein-serine/threonine phosphatase.
pdb deposition date	2013-06-19

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
B	PF00481	PP2C	Protein phosphatase 2C

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.60.40.10	Alpha Beta	4-Layer Sandwich	Phosphatase 2c; domain 1	PPM-type phosphatase domain	4la7B00

4WVOB 5ITIA 2JFSA 4RAFA 3W45A 3F79A 5F1MA 3ES2A 2JFTA 4LG5B 2P8EA 1A6QA 5JO1B 4RA2A 4LA7B 3QN1B 1TXOA 4LGAB 3W41A 3NMVB 2I0OA 2POMA 5JO2B 3W43A 3FXOA 3N3CA 4DA1A 2Y09A 3JRQA 2PK0A 3T9QA 3UJLB 3KDJB 2JFRA 2POPA 5D2UA 3MQ3A 3FXLA 3RT0A 4RAGA 3EQ2A 3PU9A 3KB3B 4N0GA 3KE6A 4YZGA 3FXJA 3ZVUB 2CM1A 2J4OA 3T91A 4DS8B 3UJKA 2PNQA 3NMNB 3FXKA 4JNDA 2V06A 3FXMA 2ISNA 2XZVA 3NMTB 2J86A 3W40A 3UJGB 3RNRA 2IRMA 2IQ1A 4YZHA 2I44A 4LGBB 2J82A 3D8KA 3ZT9A 4OICB 3W44A 3W42A
chains in the Genus database with same CATH superfamily

4WVOB 5ITIA 2JFSA 4RAFA 3W45A 3F79A 5F1MA 3ES2A 4IIPA 4IIKA 2JFTA 4LG5B 2P8EA 1A6QA 5JO1B 4RA2A 4LA7B 3QN1B 1TXOA 4LGAB 3W41A 3NMVB 2I0OA 2POMA 5JO2B 3W43A 3FXOA 3N3CA 4DA1A 2Y09A 3JRQA 2PK0A 3T9QA 3UJLB 3KDJB 2JFRA 2POPA 5D2UA 3MQ3A 3FXLA 3RT0A 4RAGA 3EQ2A 3PU9A 3KB3B 4N0GA 3KE6A 4YZGA 3FXJA 3ZVUB 2CM1A 2J4OA 3T91A 4DS8B 3UJKA 2PNQA 3NMNB 3FXKA 4JNDA 2V06A 3FXMA 2ISNA 2XZVA 3NMTB 2J86A 3W40A 3UJGB 3RNRA 2IRMA 2IQ1A 4YZHA 2I44A 4LGBB 2J82A 3D8KA 3ZT9A 4OICB 3W44A 3W42A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 4WVO B;  5ITI A;  2JFS A;  4RAF A;  3W45 A;  3F79 A;  5F1M A;  3ES2 A;  2JFT A;  4LG5 B;  2P8E A;  1A6Q A;  5JO1 B;  4RA2 A;  4LA7 B;  3QN1 B;  1TXO A;  4LGA B;  3W41 A;  3NMV B;  2I0O A;  2POM A;  5JO2 B;  3W43 A;  3FXO A;  3N3C A;  4DA1 A;  2Y09 A;  3JRQ A;  2PK0 A;  3T9Q A;  3UJL B;  3KDJ B;  2JFR A;  2POP A;  5D2U A;  3MQ3 A;  3FXL A;  3RT0 A;  4RAG A;  3EQ2 A;  3PU9 A;  3KB3 B;  4N0G A;  3KE6 A;  4YZG A;  3FXJ A;  3ZVU B;  2CM1 A;  2J4O A;  3T91 A;  4DS8 B;  3UJK A;  2PNQ A;  3NMN B;  3FXK A;  4JND A;  2V06 A;  3FXM A;  2ISN A;  2XZV A;  3NMT B;  2J86 A;  3W40 A;  3UJG B;  3RNR A;  2IRM A;  2IQ1 A;  4YZH A;  2I44 A;  4LGB B;  2J82 A;  3D8K A;  3ZT9 A;  4OIC B;  3W44 A;  3W42 A; 
#chains in the Genus database with same CATH topology
 4WVO B;  5ITI A;  2JFS A;  4RAF A;  3W45 A;  3F79 A;  5F1M A;  3ES2 A;  4IIP A;  4IIK A;  2JFT A;  4LG5 B;  2P8E A;  1A6Q A;  5JO1 B;  4RA2 A;  4LA7 B;  3QN1 B;  1TXO A;  4LGA B;  3W41 A;  3NMV B;  2I0O A;  2POM A;  5JO2 B;  3W43 A;  3FXO A;  3N3C A;  4DA1 A;  2Y09 A;  3JRQ A;  2PK0 A;  3T9Q A;  3UJL B;  3KDJ B;  2JFR A;  2POP A;  5D2U A;  3MQ3 A;  3FXL A;  3RT0 A;  4RAG A;  3EQ2 A;  3PU9 A;  3KB3 B;  4N0G A;  3KE6 A;  4YZG A;  3FXJ A;  3ZVU B;  2CM1 A;  2J4O A;  3T91 A;  4DS8 B;  3UJK A;  2PNQ A;  3NMN B;  3FXK A;  4JND A;  2V06 A;  3FXM A;  2ISN A;  2XZV A;  3NMT B;  2J86 A;  3W40 A;  3UJG B;  3RNR A;  2IRM A;  2IQ1 A;  4YZH A;  2I44 A;  4LGB B;  2J82 A;  3D8K A;  3ZT9 A;  4OIC B;  3W44 A;  3W42 A; 
#chains in the Genus database with same CATH homology
 4WVO B;  5ITI A;  2JFS A;  4RAF A;  3W45 A;  3F79 A;  5F1M A;  3ES2 A;  2JFT A;  4LG5 B;  2P8E A;  1A6Q A;  5JO1 B;  4RA2 A;  4LA7 B;  3QN1 B;  1TXO A;  4LGA B;  3W41 A;  3NMV B;  2I0O A;  2POM A;  5JO2 B;  3W43 A;  3FXO A;  3N3C A;  4DA1 A;  2Y09 A;  3JRQ A;  2PK0 A;  3T9Q A;  3UJL B;  3KDJ B;  2JFR A;  2POP A;  5D2U A;  3MQ3 A;  3FXL A;  3RT0 A;  4RAG A;  3EQ2 A;  3PU9 A;  3KB3 B;  4N0G A;  3KE6 A;  4YZG A;  3FXJ A;  3ZVU B;  2CM1 A;  2J4O A;  3T91 A;  4DS8 B;  3UJK A;  2PNQ A;  3NMN B;  3FXK A;  4JND A;  2V06 A;  3FXM A;  2ISN A;  2XZV A;  3NMT B;  2J86 A;  3W40 A;  3UJG B;  3RNR A;  2IRM A;  2IQ1 A;  4YZH A;  2I44 A;  4LGB B;  2J82 A;  3D8K A;  3ZT9 A;  4OIC B;  3W44 A;  3W42 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

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#similar chains, but unknotted
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4LA7B

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations