4LGBB

Aba-mimicking ligand n-(1-methyl-2-oxo-1,2,3,4-tetrahydroquinolin-6-yl)-1-(4-methylphenyl)methanesulfonamide in complex with aba receptor pyl2 and pp2c hab1
Total Genus 82

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
82
sequence length
320
structure length
292
Chain Sequence
CIPLWGTVSIQGNRSEMEDAFAVSPHFLKLPIKMLMLTGHFFGVYDGHGGHKVADYCRDRLHFALAEEIERIKRQVQWDKVFTSCFLTVDGEIEGKIGRAVVDKVLEAVASETVGSTAVVALVCSSHIVVSNCGDSRAVLFRGKEAMPLSVDHKPDREDEYARIENAGGKVIQWQGARVFGVLAMSRSIGDRYLKPYVIPEPEVTFMPRSREDECLILASDGLWDVMNNQEVCEIARRRILMWHKKNGPLAERGKGIDPACQAAADYLSMLALQKGSKDNISIIVIDLKAQR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
EMPTYTIV1 (196-199)TIV4 (245-248)AH2 (282-302)S1 (190-195)S2 (205-213)TI1 (217-220)S3 (236-242)AH1 (248-267)Updating...
connected with : NaN
molecule tags Hydrolase/receptor
source organism Arabidopsis thaliana
publication title An ABA-mimicking ligand that reduces water loss and promotes drought resistance in plants.
pubmed doi rcsb
molecule keywords Abscisic acid receptor PYL2
total genus 82
structure length 292
sequence length 320
ec nomenclature ec 3.1.3.16: Protein-serine/threonine phosphatase.
pdb deposition date 2013-06-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00481 PP2C Protein phosphatase 2C
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.40.10 Alpha Beta 4-Layer Sandwich Phosphatase 2c; domain 1 PPM-type phosphatase domain 4lgbB00
3W44A 3KB3B 3ZT9A 5JO1B 3T91A 2J4OA 3W43A 3NMTB 3FXMA 3W45A 4LG5B 3FXKA 3W40A 2J82A 3JRQA 2V06A 4YZGA 3UJLB 3W42A 3RT0A 4WVOB 5D2UA 2POMA 3F79A 2PNQA 4LGBB 2IQ1A 2XZVA 3UJKA 4DA1A 3FXOA 4RAGA 3PU9A 3NMVB 2ISNA 2JFRA 3RNRA 2J86A 3MQ3A 5ITIA 4RA2A 2POPA 4RAFA 3N3CA 2JFTA 5F1MA 3W41A 3D8KA 3NMNB 3ES2A 2IRMA 3KDJB 2CM1A 3UJGB 3FXJA 1A6QA 4N0GA 3EQ2A 2I0OA 2Y09A 4DS8B 2JFSA 3FXLA 2I44A 1TXOA 3T9QA 4LA7B 3KE6A 3QN1B 2P8EA 4LGAB 4JNDA 3ZVUB 4OICB 4YZHA 2PK0A 5JO2B
chains in the Genus database with same CATH superfamily
3W44A 3KB3B 3ZT9A 5JO1B 3T91A 2J4OA 3W43A 3NMTB 3FXMA 3W45A 4LG5B 3FXKA 3W40A 2J82A 3JRQA 2V06A 4YZGA 3UJLB 3W42A 3RT0A 4WVOB 5D2UA 2POMA 3F79A 2PNQA 4LGBB 2IQ1A 2XZVA 3UJKA 4DA1A 3FXOA 4RAGA 3PU9A 3NMVB 2ISNA 2JFRA 3RNRA 2J86A 3MQ3A 5ITIA 4RA2A 2POPA 4RAFA 3N3CA 2JFTA 5F1MA 3W41A 3D8KA 3NMNB 3ES2A 2IRMA 3KDJB 2CM1A 3UJGB 3FXJA 1A6QA 4N0GA 3EQ2A 2I0OA 2Y09A 4DS8B 2JFSA 3FXLA 2I44A 1TXOA 3T9QA 4LA7B 3KE6A 4IIPA 3QN1B 2P8EA 4LGAB 4IIKA 4JNDA 3ZVUB 4OICB 4YZHA 2PK0A 5JO2B
chains in the Genus database with same CATH topology
3W44A 3KB3B 3ZT9A 5JO1B 3T91A 2J4OA 3W43A 3NMTB 3FXMA 3W45A 4LG5B 3FXKA 3W40A 2J82A 3JRQA 2V06A 4YZGA 3UJLB 3W42A 3RT0A 4WVOB 5D2UA 2POMA 3F79A 2PNQA 4LGBB 2IQ1A 2XZVA 3UJKA 4DA1A 3FXOA 4RAGA 3PU9A 3NMVB 2ISNA 2JFRA 3RNRA 2J86A 3MQ3A 5ITIA 4RA2A 2POPA 4RAFA 3N3CA 2JFTA 5F1MA 3W41A 3D8KA 3NMNB 3ES2A 2IRMA 3KDJB 2CM1A 3UJGB 3FXJA 1A6QA 4N0GA 3EQ2A 2I0OA 2Y09A 4DS8B 2JFSA 3FXLA 2I44A 1TXOA 3T9QA 4LA7B 3KE6A 3QN1B 2P8EA 4LGAB 4JNDA 3ZVUB 4OICB 4YZHA 2PK0A 5JO2B
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 3W44 A;  3KB3 B;  3ZT9 A;  5JO1 B;  3T91 A;  2J4O A;  3W43 A;  3NMT B;  3FXM A;  3W45 A;  4LG5 B;  3FXK A;  3W40 A;  2J82 A;  3JRQ A;  2V06 A;  4YZG A;  3UJL B;  3W42 A;  3RT0 A;  4WVO B;  5D2U A;  2POM A;  3F79 A;  2PNQ A;  4LGB B;  2IQ1 A;  2XZV A;  3UJK A;  4DA1 A;  3FXO A;  4RAG A;  3PU9 A;  3NMV B;  2ISN A;  2JFR A;  3RNR A;  2J86 A;  3MQ3 A;  5ITI A;  4RA2 A;  2POP A;  4RAF A;  3N3C A;  2JFT A;  5F1M A;  3W41 A;  3D8K A;  3NMN B;  3ES2 A;  2IRM A;  3KDJ B;  2CM1 A;  3UJG B;  3FXJ A;  1A6Q A;  4N0G A;  3EQ2 A;  2I0O A;  2Y09 A;  4DS8 B;  2JFS A;  3FXL A;  2I44 A;  1TXO A;  3T9Q A;  4LA7 B;  3KE6 A;  3QN1 B;  2P8E A;  4LGA B;  4JND A;  3ZVU B;  4OIC B;  4YZH A;  2PK0 A;  5JO2 B; 
#chains in the Genus database with same CATH topology
 3W44 A;  3KB3 B;  3ZT9 A;  5JO1 B;  3T91 A;  2J4O A;  3W43 A;  3NMT B;  3FXM A;  3W45 A;  4LG5 B;  3FXK A;  3W40 A;  2J82 A;  3JRQ A;  2V06 A;  4YZG A;  3UJL B;  3W42 A;  3RT0 A;  4WVO B;  5D2U A;  2POM A;  3F79 A;  2PNQ A;  4LGB B;  2IQ1 A;  2XZV A;  3UJK A;  4DA1 A;  3FXO A;  4RAG A;  3PU9 A;  3NMV B;  2ISN A;  2JFR A;  3RNR A;  2J86 A;  3MQ3 A;  5ITI A;  4RA2 A;  2POP A;  4RAF A;  3N3C A;  2JFT A;  5F1M A;  3W41 A;  3D8K A;  3NMN B;  3ES2 A;  2IRM A;  3KDJ B;  2CM1 A;  3UJG B;  3FXJ A;  1A6Q A;  4N0G A;  3EQ2 A;  2I0O A;  2Y09 A;  4DS8 B;  2JFS A;  3FXL A;  2I44 A;  1TXO A;  3T9Q A;  4LA7 B;  3KE6 A;  4IIP A;  3QN1 B;  2P8E A;  4LGA B;  4IIK A;  4JND A;  3ZVU B;  4OIC B;  4YZH A;  2PK0 A;  5JO2 B; 
#chains in the Genus database with same CATH homology
 3W44 A;  3KB3 B;  3ZT9 A;  5JO1 B;  3T91 A;  2J4O A;  3W43 A;  3NMT B;  3FXM A;  3W45 A;  4LG5 B;  3FXK A;  3W40 A;  2J82 A;  3JRQ A;  2V06 A;  4YZG A;  3UJL B;  3W42 A;  3RT0 A;  4WVO B;  5D2U A;  2POM A;  3F79 A;  2PNQ A;  4LGB B;  2IQ1 A;  2XZV A;  3UJK A;  4DA1 A;  3FXO A;  4RAG A;  3PU9 A;  3NMV B;  2ISN A;  2JFR A;  3RNR A;  2J86 A;  3MQ3 A;  5ITI A;  4RA2 A;  2POP A;  4RAF A;  3N3C A;  2JFT A;  5F1M A;  3W41 A;  3D8K A;  3NMN B;  3ES2 A;  2IRM A;  3KDJ B;  2CM1 A;  3UJG B;  3FXJ A;  1A6Q A;  4N0G A;  3EQ2 A;  2I0O A;  2Y09 A;  4DS8 B;  2JFS A;  3FXL A;  2I44 A;  1TXO A;  3T9Q A;  4LA7 B;  3KE6 A;  3QN1 B;  2P8E A;  4LGA B;  4JND A;  3ZVU B;  4OIC B;  4YZH A;  2PK0 A;  5JO2 B;
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...
How to cite
Application loaded.