4LN9A

Crystal structure of the dehydratase domain from the terminal module of the rifamycin polyketide synthase
Total Genus 72

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
72
sequence length
288
structure length
281
Chain Sequence
DAVSLGLAGADHPLLGAVVQLPQSDGLVFTSRLSLRSHPWLADHAVRDVVIVPGTGLVELAVRAGDEAGCPVLDELVIEAPLVVPRRGGVRVQVALGGPADDGSRTVDVFSLREDADSWLRHATGVLVPENRPRGTAAFDFAAWPPPEAKPVDLTGAYDVLADVGYGYGPTFRAVRAVWRRGSGNTTETFAEIALPEDARAEAGRFGIHPALLDAALHSTMVSAAADVRLPFAWNGLRLHAAGASVLRVRVAKPERDSLSLEAVDESGGLVVTLDSLVGRP

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
3H1 (8-11)TI1 (18-21)EMPTYAH1 (60-74)3H4 (203-205)S1 (14-15)TI3 (28-31)TI2 (27-30)S2 (23-27)S8 (95-102)TVIII1 (91-94)S3 (32-40)S9 (111-119)TI4 (40-43)TI5 (41-44)AH2 (163-170)S4 (50-52)3H2 (45-49)S5 (55-58)AH3 (206-210)AH4 (216-232)S6 (78-84)S7 (88-89)TI6 (106-109)TI7 (119-122)TIV4 (189-192)TI8 (146-149)S13 (181-187)O1 (178-180)TVIII3 (147-150)3H3 (176-178)TIV3 (149-152)TII1 (152-155)S11 (156-158)S12 (172-174)S14 (194-200)S15 (243-252)TI9 (190-193)TVIII4 (212-215)TI11 (278-281)S16 (259-268)TIV5 (266-269)S10 (126-134)TVIII2 (136-139)TIV2 (51-54)TII2 (160-163)S17 (271-277)Updating...
connected with : NaN
molecule tags Lyase
source organism Amycolatopsis mediterranei
publication title Structure and stereospecificity of the dehydratase domain from the terminal module of the rifamycin polyketide synthase.
pubmed doi rcsb
molecule keywords Rifamycin polyketide synthase
total genus 72
structure length 281
sequence length 288
chains with identical sequence B
ec nomenclature ec 2.3.1.94: 6-deoxyerythronolide-B synthase.
pdb deposition date 2013-07-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF14765 PS-DH Polyketide synthase dehydratase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.129.110 Alpha Beta Roll Thiol Ester Dehydrase; Chain A Thiol Ester Dehydrase; Chain A 4ln9A00
5BP2A 2VZ8A 3HRQA 5E1VA 5KKUA 4LN9A 2VZ9A 4KC5A 4OOCA 3HRRA 5BP3A 4U3VA 3EL6A 3KG9A 3KG6A 3KG7A
chains in the Genus database with same CATH superfamily
4IENA 3DP1A 3CF9A 4W78A 1LO8A 5EO4A 2XEMA 2GF6A 4I45A 2B6EA 3KUVA 3E1EA 3D04A 1VPMA 1MKBA 3B7KA 3FRNA 3P2QA 3P2RA 4GAHA 1YOCA 1VI8A 2GVHA 2HX5A 3R3CA 1MKAA 4OOBA 5HMBA 2Q78A 1LO7A 1PSUA 5T06A 4QDAA 3HRRA 3R32A 3R3DA 2AV9A 3DOZA 3Q62A 4E3EA 3HMJG 3F5OA 1WLUA 4W78B 3S6PA 2VZ8A 3LMBA 3ZH6A 3KW1A 3LBBA 4XY6A 5EGKA 3SPSA 3AZ9A 1BVQA 1Q4TA 4A0YA 3CK1A 2O6TA 3HM0A 3R36A 2F41A 3R35A 5BP2A 1TBUA 5SZUA 1S9CA 4RLJB 3EXZA 3R34A 5F6RA 3KV7A 5SZVA 2QQPA 4AE8A 2XFLA 4ORDA 4AE7A 2GLPA 4ZW0A 3ZH7A 5KL9A 1C8UA 1VH9A 4K4DA 1YLIA 2C2IA 1SBKA 3R87A 2FS2A 3DP2A 4HZNA 4A0ZA 5HZ4A 2GLMA 4QD7A 3GEKA 4R9ZA 2O6BA 5HWFA 4M20A 4NCPA 2HBOA 3OMLA 3ESIA 3R3FA 4K4BA 3TEAA 3AZAA 3E8PA 4KC5A 1Q4SA 4RLJA 3ZH7B 4KEHA 5DM5A 4QFWA 3R3BA 3BJKA 2F0XA 1Y7UA 3BBJA 3HDUA 4I4JA 4RMMA 5KKUA 3KH8A 2CY9A 3U0AA 2O5UA 2EISA 4FFUA 1Z54A 2FUJA 2GLLA 2QQ2A 2QWZA 3P3IA 3E29A 4ZV3A 3CJYA 2EGJA 3DP3A 4MZQA 2BI0A 4U3VA 3EL6A 1VH5A 4K49A 4B0CA 3KG7A 5E1VA 5EGLA 3DKZA 1ZKIA 4FQ9A 1OHFA 1SH8A 3R37A 3QY3A 3CF8A 4QDBA 4RLWA 2B3MA 3KX8A 5BP3A 4R4UA 3KG9A 3QOOA 2EGIA 3NWZA 2VKZG 1WN3A 4YBVA 4B0IA 4CL6A 1WM6A 2VZ9A 4RLUB 3P3FA 2UV8G 1PN4A 1Q4UA 2PFCA 1Z6BA 3ZH5A 4WNBB 2NUJA 3KG6A 3KVZA 4QD9A 5HMCA 3HRQA 3KV8A 1WLVA 3KX7A 2OAFA 2OWNA 4MOCA 4RLWB 5BUWA 4B0JA 2F3XA 4A0XA 5HD6A 3B18A 1ZHGA 2Q2BA 5SZZA 1PN2A 3R3AA 5BUYA 2OKIA 2DSLA 2PRXA 3IR3A 3RQBA 5BUXA 3RD7A 3AZBA 4OOCA 2V1OA 2OKHA 1NJKA 4GAKA 4K00A 2O6UA 3LWGA 4RLUA 4RV2B 4WNBA 5EO2A 2CYEA 3LW3A 3D6LA 4H4GA 5EP5A 2GLVA 4MTUA 5T02A 4XY5A 3DP0A 1LO9A 2OIWA 4RLTB 2ESSA 4MOBA 5EGJA 3DOYA 3KG8A 4ZRFA 1U1ZA 2OV9A 2W3XA 1J1YA 3KHPA 5DIOA 1SC0A 3WEWA 3S4KA 4QD8A 5SZYA 4A12A 5T07A 3D6XA 1S5UA 4HZPA 4I82A 2PIMA 4ZRBA 4K4CA 3KVUA 3LZ7A 3F1TA 3LBEA 3B7JA 4I83A 4RV2A 4B0BA 4B8UA 3P2SA 4HZOA 3KUWA 2PZHA 4K02A 2H4UA 5BYUA 1IQ6A 4LN9A 4RLTA 2EGRA 3KVIA 2CWZA 1IXLA 4K4AA 5CPGA 3BNVA 3ED0A 3K67A 4ZJBA 1Q6WA 3AZ8A 1T82A 2HLJA
chains in the Genus database with same CATH topology
5E1VA 1OHFA 5BP3A 4R4UA 3KG9A 4R9ZA 3FRNA 2VKZG 3KG8A 2VZ9A 4KC5A 3ZH7B 2UV8G 2PFCA 3HRRA 3ZH5A 3HMJG 4QFWA 3KG6A 3S6PA 3ZH6A 2VZ8A 3HRQA 3BBJA 5KKUA 3U0AA 3B18A 5BP2A 2QQPA 3RQBA 3CJYA 4LN9A 3RD7A 4OOCA 3ZH7A 4U3VA 3EL6A 3KG7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5BP2 A;  2VZ8 A;  3HRQ A;  5E1V A;  5KKU A;  4LN9 A;  2VZ9 A;  4KC5 A;  4OOC A;  3HRR A;  5BP3 A;  4U3V A;  3EL6 A;  3KG9 A;  3KG6 A;  3KG7 A; 
#chains in the Genus database with same CATH topology
 4IEN A;  3DP1 A;  3CF9 A;  4W78 A;  1LO8 A;  5EO4 A;  2XEM A;  2GF6 A;  4I45 A;  2B6E A;  3KUV A;  3E1E A;  3D04 A;  1VPM A;  1MKB A;  3B7K A;  3FRN A;  3P2Q A;  3P2R A;  4GAH A;  1YOC A;  1VI8 A;  2GVH A;  2HX5 A;  3R3C A;  1MKA A;  4OOB A;  5HMB A;  2Q78 A;  1LO7 A;  1PSU A;  5T06 A;  4QDA A;  3HRR A;  3R32 A;  3R3D A;  2AV9 A;  3DOZ A;  3Q62 A;  4E3E A;  3HMJ G;  3F5O A;  1WLU A;  4W78 B;  3S6P A;  2VZ8 A;  3LMB A;  3ZH6 A;  3KW1 A;  3LBB A;  4XY6 A;  5EGK A;  3SPS A;  3AZ9 A;  1BVQ A;  1Q4T A;  4A0Y A;  3CK1 A;  2O6T A;  3HM0 A;  3R36 A;  2F41 A;  3R35 A;  5BP2 A;  1TBU A;  5SZU A;  1S9C A;  4RLJ B;  3EXZ A;  3R34 A;  5F6R A;  3KV7 A;  5SZV A;  2QQP A;  4AE8 A;  2XFL A;  4ORD A;  4AE7 A;  2GLP A;  4ZW0 A;  3ZH7 A;  5KL9 A;  1C8U A;  1VH9 A;  4K4D A;  1YLI A;  2C2I A;  1SBK A;  3R87 A;  2FS2 A;  3DP2 A;  4HZN A;  4A0Z A;  5HZ4 A;  2GLM A;  4QD7 A;  3GEK A;  4R9Z A;  2O6B A;  5HWF A;  4M20 A;  4NCP A;  2HBO A;  3OML A;  3ESI A;  3R3F A;  4K4B A;  3TEA A;  3AZA A;  3E8P A;  4KC5 A;  1Q4S A;  4RLJ A;  3ZH7 B;  4KEH A;  5DM5 A;  4QFW A;  3R3B A;  3BJK A;  2F0X A;  1Y7U A;  3BBJ A;  3HDU A;  4I4J A;  4RMM A;  5KKU A;  3KH8 A;  2CY9 A;  3U0A A;  2O5U A;  2EIS A;  4FFU A;  1Z54 A;  2FUJ A;  2GLL A;  2QQ2 A;  2QWZ A;  3P3I A;  3E29 A;  4ZV3 A;  3CJY A;  2EGJ A;  3DP3 A;  4MZQ A;  2BI0 A;  4U3V A;  3EL6 A;  1VH5 A;  4K49 A;  4B0C A;  3KG7 A;  5E1V A;  5EGL A;  3DKZ A;  1ZKI A;  4FQ9 A;  1OHF A;  1SH8 A;  3R37 A;  3QY3 A;  3CF8 A;  4QDB A;  4RLW A;  2B3M A;  3KX8 A;  5BP3 A;  4R4U A;  3KG9 A;  3QOO A;  2EGI A;  3NWZ A;  2VKZ G;  1WN3 A;  4YBV A;  4B0I A;  4CL6 A;  1WM6 A;  2VZ9 A;  4RLU B;  3P3F A;  2UV8 G;  1PN4 A;  1Q4U A;  2PFC A;  1Z6B A;  3ZH5 A;  4WNB B;  2NUJ A;  3KG6 A;  3KVZ A;  4QD9 A;  5HMC A;  3HRQ A;  3KV8 A;  1WLV A;  3KX7 A;  2OAF A;  2OWN A;  4MOC A;  4RLW B;  5BUW A;  4B0J A;  2F3X A;  4A0X A;  5HD6 A;  3B18 A;  1ZHG A;  2Q2B A;  5SZZ A;  1PN2 A;  3R3A A;  5BUY A;  2OKI A;  2DSL A;  2PRX A;  3IR3 A;  3RQB A;  5BUX A;  3RD7 A;  3AZB A;  4OOC A;  2V1O A;  2OKH A;  1NJK A;  4GAK A;  4K00 A;  2O6U A;  3LWG A;  4RLU A;  4RV2 B;  4WNB A;  5EO2 A;  2CYE A;  3LW3 A;  3D6L A;  4H4G A;  5EP5 A;  2GLV A;  4MTU A;  5T02 A;  4XY5 A;  3DP0 A;  1LO9 A;  2OIW A;  4RLT B;  2ESS A;  4MOB A;  5EGJ A;  3DOY A;  3KG8 A;  4ZRF A;  1U1Z A;  2OV9 A;  2W3X A;  1J1Y A;  3KHP A;  5DIO A;  1SC0 A;  3WEW A;  3S4K A;  4QD8 A;  5SZY A;  4A12 A;  5T07 A;  3D6X A;  1S5U A;  4HZP A;  4I82 A;  2PIM A;  4ZRB A;  4K4C A;  3KVU A;  3LZ7 A;  3F1T A;  3LBE A;  3B7J A;  4I83 A;  4RV2 A;  4B0B A;  4B8U A;  3P2S A;  4HZO A;  3KUW A;  2PZH A;  4K02 A;  2H4U A;  5BYU A;  1IQ6 A;  4LN9 A;  4RLT A;  2EGR A;  3KVI A;  2CWZ A;  1IXL A;  4K4A A;  5CPG A;  3BNV A;  3ED0 A;  3K67 A;  4ZJB A;  1Q6W A;  3AZ8 A;  1T82 A;  2HLJ A; 
#chains in the Genus database with same CATH homology
 5E1V A;  1OHF A;  5BP3 A;  4R4U A;  3KG9 A;  4R9Z A;  3FRN A;  2VKZ G;  3KG8 A;  2VZ9 A;  4KC5 A;  3ZH7 B;  2UV8 G;  2PFC A;  3HRR A;  3ZH5 A;  3HMJ G;  4QFW A;  3KG6 A;  3S6P A;  3ZH6 A;  2VZ8 A;  3HRQ A;  3BBJ A;  5KKU A;  3U0A A;  3B18 A;  5BP2 A;  2QQP A;  3RQB A;  3CJY A;  4LN9 A;  3RD7 A;  4OOC A;  3ZH7 A;  4U3V A;  3EL6 A;  3KG7 A; 
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