4NC0A

Crystal structure of tcda-a2 bound to a26.8 vhh
Total Genus 42
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
42
sequence length
249
structure length
243
Chain Sequence
GMRTIDGKKYYFNATGWQTIDGKKYYFNTNTSIASTGYTIINDKHFYFNTDGIMQIGVFKGPDGFEYFAPANTDANNIEGQAIRYQNRFLYLHDNIYYFGNNSKAATGWVTIDGRRYYFEPNTAIGANGYKIIDNKNFYFRNGLPQIGVFKGPNGFEYFAPANTDANNIDGQAIRYQNRFLHLLGNIYYFGNNSKAVTGWQTINGNMYYFMPDTAMAAAGGLFEIDGVIYFFGVDGVKAPGIY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural Basis for Antibody Recognition in the Receptor-binding Domains of Toxins A and B from Clostridium difficile.
pubmed doi rcsb
molecule tags Immune system
source organism Clostridium difficile
molecule keywords Cell wall-binding repeat protein
total genus 42
structure length 243
sequence length 249
ec nomenclature
pdb deposition date 2013-10-23
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.270.10 Mainly Beta Ribbon left handed beta-beta-3-solenoid Cholin Binding 4nc0A03
2.10.270.10 Mainly Beta Ribbon left handed beta-beta-3-solenoid Cholin Binding 4nc0A02
2.10.270.10 Mainly Beta Ribbon left handed beta-beta-3-solenoid Cholin Binding 4nc0A01
2IXUA 4NC2A 2J8GA 2VYUA 2F6EA 4X36A 3KLLA 2X8MA 3HIAA 4NBYA 2QJ6A 3HZ3A 3TTOA 1H8GA 2J8FA 1HCXA 3TTQA 1OBAA 4AYGA 4NBZA 4TTUA 2G7CA 2X8PA 2V05A 1H09A 4TVDA 4TVCA 4NBXA 4NC0A 1GVMA 2X8OA 2IXVA 2V04A 2BMLA 3KLKA
chains in the Genus database with same CATH superfamily
2IXUA 4NC2A 2J8GA 2VYUA 2F6EA 4X36A 3KLLA 2X8MA 3HIAA 4NBYA 2QJ6A 3HZ3A 3TTOA 1H8GA 2J8FA 1HCXA 3TTQA 1OBAA 4AYGA 4NBZA 4TTUA 2G7CA 2X8PA 2V05A 1H09A 4TVDA 4TVCA 4NBXA 4NC0A 1GVMA 2X8OA 2IXVA 2V04A 2BMLA 3KLKA
chains in the Genus database with same CATH topology
2IXUA 4NC2A 2J8GA 2VYUA 2F6EA 4X36A 3KLLA 2X8MA 3HIAA 4NBYA 2QJ6A 3HZ3A 3TTOA 1H8GA 2J8FA 1HCXA 3TTQA 1OBAA 4AYGA 4NBZA 4TTUA 2G7CA 2X8PA 2V05A 1H09A 4TVDA 4TVCA 4NBXA 4NC0A 1GVMA 2X8OA 2IXVA 2V04A 2BMLA 3KLKA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2IXU A;  4NC2 A;  2J8G A;  2VYU A;  2F6E A;  4X36 A;  3KLL A;  2X8M A;  3HIA A;  4NBY A;  2QJ6 A;  3HZ3 A;  3TTO A;  1H8G A;  2J8F A;  1HCX A;  3TTQ A;  1OBA A;  4AYG A;  4NBZ A;  4TTU A;  2G7C A;  2X8P A;  2V05 A;  1H09 A;  4TVD A;  4TVC A;  4NBX A;  4NC0 A;  1GVM A;  2X8O A;  2IXV A;  2V04 A;  2BML A;  3KLK A; 
#chains in the Genus database with same CATH topology
 2IXU A;  4NC2 A;  2J8G A;  2VYU A;  2F6E A;  4X36 A;  3KLL A;  2X8M A;  3HIA A;  4NBY A;  2QJ6 A;  3HZ3 A;  3TTO A;  1H8G A;  2J8F A;  1HCX A;  3TTQ A;  1OBA A;  4AYG A;  4NBZ A;  4TTU A;  2G7C A;  2X8P A;  2V05 A;  1H09 A;  4TVD A;  4TVC A;  4NBX A;  4NC0 A;  1GVM A;  2X8O A;  2IXV A;  2V04 A;  2BML A;  3KLK A; 
#chains in the Genus database with same CATH homology
 2IXU A;  4NC2 A;  2J8G A;  2VYU A;  2F6E A;  4X36 A;  3KLL A;  2X8M A;  3HIA A;  4NBY A;  2QJ6 A;  3HZ3 A;  3TTO A;  1H8G A;  2J8F A;  1HCX A;  3TTQ A;  1OBA A;  4AYG A;  4NBZ A;  4TTU A;  2G7C A;  2X8P A;  2V05 A;  1H09 A;  4TVD A;  4TVC A;  4NBX A;  4NC0 A;  1GVM A;  2X8O A;  2IXV A;  2V04 A;  2BML A;  3KLK A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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