4OICB

Crystal structrual of a soluble protein
Total Genus 98

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
98
sequence length
321
structure length
305
Chain Sequence
SVFAVECVPLWGHKSICGRRPEMEDAVVAVSRFFDIPLWMLTGNSVVDGLDPMSFRLPAHFFGVYDGHGGAQVANYCRERLHAALVEELSRIEGSVSGANLGSVEFKKKWEQAFVDCFSRVDEEVGGNAVAPETVGSTAVVAVICSSHIIVANCGDSRAVLCRGKQPVPLSVDHKPNREDEYARIEAEGGKVIQWNGYRVFGVLAMSRSIGDRYLKPWIIPVPEITIVPRAKDDECLVLASDGLWDVMSNEEVCDVARKRILLWHKKNGSSDPAAEAAAECLSKLALQKGSKDNISVIVVDLKAH

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
EMPTYTIV5 (206-209)S1 (149-155)S2 (164-176)3H2 (239-241)TII'1 (156-159)AH2 (245-265)S3 (195-207)3H1 (177-179)AH1 (210-234)TIV3 (179-182)TIV4 (185-188)TI'1 (186-189)TI5 (289-292)TIV8 (265-273)TI1 (141-144)TI2 (190-193)S6 (302-307)S5 (292-298)S4 (280-289)TI4 (276-279)TIV7 (236-239)Updating...
connected with : NaN
molecule tags Hormone receptor/hydrolase
source organism Oryza sativa japonica group
publication title Identification and characterization of ABA receptors in Oryza sativa
pubmed doi rcsb
molecule keywords Bet v I allergen-like
total genus 98
structure length 305
sequence length 321
ec nomenclature ec 3.1.3.16: Protein-serine/threonine phosphatase.
pdb deposition date 2014-01-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00481 PP2C Protein phosphatase 2C
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.40.10 Alpha Beta 4-Layer Sandwich Phosphatase 2c; domain 1 PPM-type phosphatase domain 4oicB00
3ES2A 4RAFA 3FXMA 2CM1A 4OICB 2J4OA 2PK0A 2J82A 2POMA 3NMNB 3N3CA 3KE6A 3KDJB 3JRQA 3NMTB 2J86A 5D2UA 3RT0A 2XZVA 3RNRA 1TXOA 4LG5B 4RAGA 5JO2B 5JO1B 4RA2A 4YZHA 3W45A 3T9QA 3NMVB 3D8KA 2Y09A 3UJLB 4DA1A 2ISNA 2IQ1A 4LGBB 1A6QA 3QN1B 3FXOA 2PNQA 3W41A 4LGAB 3W43A 3MQ3A 3W42A 2JFTA 5ITIA 4JNDA 2POPA 2JFSA 3FXKA 3ZT9A 3W40A 2IRMA 3UJGB 2I44A 2I0OA 3EQ2A 3PU9A 3ZVUB 3W44A 4N0GA 2V06A 4WVOB 3FXJA 3F79A 4LA7B 4YZGA 2P8EA 3T91A 5F1MA 2JFRA 3KB3B 3FXLA 4DS8B 3UJKA
chains in the Genus database with same CATH superfamily
3ES2A 4RAFA 3FXMA 2CM1A 4OICB 2J4OA 2PK0A 2J82A 2POMA 3NMNB 3N3CA 3KE6A 3KDJB 3JRQA 3NMTB 2J86A 5D2UA 3RT0A 2XZVA 3RNRA 1TXOA 4LG5B 4RAGA 5JO2B 5JO1B 4RA2A 4YZHA 3W45A 3T9QA 3NMVB 3D8KA 2Y09A 3UJLB 4DA1A 2ISNA 2IQ1A 4LGBB 1A6QA 3QN1B 3FXOA 2PNQA 3W41A 4LGAB 3W43A 3MQ3A 3W42A 2JFTA 5ITIA 4JNDA 2POPA 2JFSA 3FXKA 4IIPA 3ZT9A 3W40A 2IRMA 3UJGB 2I44A 2I0OA 3EQ2A 3PU9A 3ZVUB 3W44A 4N0GA 2V06A 4WVOB 3FXJA 3F79A 4LA7B 4YZGA 2P8EA 4IIKA 3T91A 5F1MA 2JFRA 3KB3B 3FXLA 4DS8B 3UJKA
chains in the Genus database with same CATH topology
3ES2A 4RAFA 3FXMA 2CM1A 4OICB 2J4OA 2PK0A 2J82A 2POMA 3NMNB 3N3CA 3KE6A 3KDJB 3JRQA 3NMTB 2J86A 5D2UA 3RT0A 2XZVA 3RNRA 1TXOA 4LG5B 4RAGA 5JO2B 5JO1B 4RA2A 4YZHA 3W45A 3T9QA 3NMVB 3D8KA 2Y09A 3UJLB 4DA1A 2ISNA 2IQ1A 4LGBB 1A6QA 3QN1B 3FXOA 2PNQA 3W41A 4LGAB 3W43A 3MQ3A 3W42A 2JFTA 5ITIA 4JNDA 2POPA 2JFSA 3FXKA 3ZT9A 3W40A 2IRMA 3UJGB 2I44A 2I0OA 3EQ2A 3PU9A 3ZVUB 3W44A 4N0GA 2V06A 4WVOB 3FXJA 3F79A 4LA7B 4YZGA 2P8EA 3T91A 5F1MA 2JFRA 3KB3B 3FXLA 4DS8B 3UJKA
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 3ES2 A;  4RAF A;  3FXM A;  2CM1 A;  4OIC B;  2J4O A;  2PK0 A;  2J82 A;  2POM A;  3NMN B;  3N3C A;  3KE6 A;  3KDJ B;  3JRQ A;  3NMT B;  2J86 A;  5D2U A;  3RT0 A;  2XZV A;  3RNR A;  1TXO A;  4LG5 B;  4RAG A;  5JO2 B;  5JO1 B;  4RA2 A;  4YZH A;  3W45 A;  3T9Q A;  3NMV B;  3D8K A;  2Y09 A;  3UJL B;  4DA1 A;  2ISN A;  2IQ1 A;  4LGB B;  1A6Q A;  3QN1 B;  3FXO A;  2PNQ A;  3W41 A;  4LGA B;  3W43 A;  3MQ3 A;  3W42 A;  2JFT A;  5ITI A;  4JND A;  2POP A;  2JFS A;  3FXK A;  3ZT9 A;  3W40 A;  2IRM A;  3UJG B;  2I44 A;  2I0O A;  3EQ2 A;  3PU9 A;  3ZVU B;  3W44 A;  4N0G A;  2V06 A;  4WVO B;  3FXJ A;  3F79 A;  4LA7 B;  4YZG A;  2P8E A;  3T91 A;  5F1M A;  2JFR A;  3KB3 B;  3FXL A;  4DS8 B;  3UJK A; 
#chains in the Genus database with same CATH topology
 3ES2 A;  4RAF A;  3FXM A;  2CM1 A;  4OIC B;  2J4O A;  2PK0 A;  2J82 A;  2POM A;  3NMN B;  3N3C A;  3KE6 A;  3KDJ B;  3JRQ A;  3NMT B;  2J86 A;  5D2U A;  3RT0 A;  2XZV A;  3RNR A;  1TXO A;  4LG5 B;  4RAG A;  5JO2 B;  5JO1 B;  4RA2 A;  4YZH A;  3W45 A;  3T9Q A;  3NMV B;  3D8K A;  2Y09 A;  3UJL B;  4DA1 A;  2ISN A;  2IQ1 A;  4LGB B;  1A6Q A;  3QN1 B;  3FXO A;  2PNQ A;  3W41 A;  4LGA B;  3W43 A;  3MQ3 A;  3W42 A;  2JFT A;  5ITI A;  4JND A;  2POP A;  2JFS A;  3FXK A;  4IIP A;  3ZT9 A;  3W40 A;  2IRM A;  3UJG B;  2I44 A;  2I0O A;  3EQ2 A;  3PU9 A;  3ZVU B;  3W44 A;  4N0G A;  2V06 A;  4WVO B;  3FXJ A;  3F79 A;  4LA7 B;  4YZG A;  2P8E A;  4IIK A;  3T91 A;  5F1M A;  2JFR A;  3KB3 B;  3FXL A;  4DS8 B;  3UJK A; 
#chains in the Genus database with same CATH homology
 3ES2 A;  4RAF A;  3FXM A;  2CM1 A;  4OIC B;  2J4O A;  2PK0 A;  2J82 A;  2POM A;  3NMN B;  3N3C A;  3KE6 A;  3KDJ B;  3JRQ A;  3NMT B;  2J86 A;  5D2U A;  3RT0 A;  2XZV A;  3RNR A;  1TXO A;  4LG5 B;  4RAG A;  5JO2 B;  5JO1 B;  4RA2 A;  4YZH A;  3W45 A;  3T9Q A;  3NMV B;  3D8K A;  2Y09 A;  3UJL B;  4DA1 A;  2ISN A;  2IQ1 A;  4LGB B;  1A6Q A;  3QN1 B;  3FXO A;  2PNQ A;  3W41 A;  4LGA B;  3W43 A;  3MQ3 A;  3W42 A;  2JFT A;  5ITI A;  4JND A;  2POP A;  2JFS A;  3FXK A;  3ZT9 A;  3W40 A;  2IRM A;  3UJG B;  2I44 A;  2I0O A;  3EQ2 A;  3PU9 A;  3ZVU B;  3W44 A;  4N0G A;  2V06 A;  4WVO B;  3FXJ A;  3F79 A;  4LA7 B;  4YZG A;  2P8E A;  3T91 A;  5F1M A;  2JFR A;  3KB3 B;  3FXL A;  4DS8 B;  3UJK A;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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