4QFWA

Crystal structure of acyl-coa thioesterase tesb from yersinia pestis
Total Genus 68

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
68
sequence length
282
structure length
263
Chain Sequence
ALEKLLDLLDLEKIEEGIFRGQSEQVFGGQVVGQAIYAAKQTVPAERTVHSFHSYFLRPGDSSKPIIYDVETLRDGNSFSARRVSAIQNGKPIFYMTASFQSQEEGFEHQNTMPDVPPPEGLMSETDIARQGPQPIEMRPVKFHNPLQGSVEEPNRYVWFRANGKMPDDLRVHQYLLGYASDFNFLPTALQPHGIGFLEPGMQIATIDHSMWFHRPFRLDDWLLYAVESTSASGARGFVRGQIYNREGVLVASTVQEGVIRLH

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (4-12)TIV1 (26-34)TII1 (18-21)S1 (15-18)TI2 (69-72)EMPTYS2 (21-24)S8 (177-184)S3 (55-64)AH2 (36-49)S6 (99-110)TI5 (212-215)TI1 (52-55)TIV3 (95-98)TIV6 (204-207)TIV2 (84-87)S4 (74-83)S5 (87-96)TI8 (240-243)TIV7 (241-244)S10 (245-255)TI3 (127-130)TIV4 (126-129)AH3 (133-138)S7 (158-162)TVIII1 (156-159)S9 (224-235)TII2 (221-224)TVIII2 (162-165)TI7 (218-221)TI4 (167-170)TIV5 (168-171)O1 (175-177)3H1 (208-212)TI'2 (255-258)S11 (258-266)O2 (184-186)AH4 (192-203)Updating...
connected with : NaN
molecule tags Hydrolase
source organism Yersinia pestis
publication title Crystallization of the acyl-CoA thioesterase TesB from Yersinia pestis.
pubmed doi rcsb
molecule keywords Acyl-CoA thioesterase II
total genus 68
structure length 263
sequence length 282
chains with identical sequence B, C, D
ec nomenclature ec 3.1.2.-:
pdb deposition date 2014-05-21
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.129.90 Alpha Beta Roll Thiol Ester Dehydrase; Chain A Thiol Ester Dehydrase; Chain A 4qfwA00
3RD7A 3CJYA 4R4UA 3RQBA 4R9ZA 4QFWA 3BBJA 3U0AA
chains in the Genus database with same CATH superfamily
1S9CA 3R36A 3S4KA 2HLJA 2O6UA 4ORDA 1MKAA 2OAFA 1Q4TA 4ZV3A 5F6RA 4R9ZA 3KHPA 1PSUA 3R3FA 3KVUA 3B7KA 4I83A 4QD9A 3ZH7A 5EGKA 4QD8A 4K4BA 2GLVA 3CK1A 3OMLA 3R3BA 1ZKIA 3GEKA 4NCPA 1PN4A 4HZNA 1Z54A 3K67A 5BUWA 4KEHA 2CWZA 2XEMA 5BYUA 3D6XA 4K4CA 3DP1A 1VH5A 3F5OA 4RLUA 3P2SA 5EO4A 3R37A 4MTUA 1Q4SA 3KH8A 3R35A 5HD6A 1Y7UA 4ZRBA 2EGRA 1Q6WA 3HMJG 3KVZA 2PFCA 2V1OA 3ED0A 4HZOA 4QDAA 4RLTB 1T82A 3KV7A 1J1YA 2UV8G 2GLMA 4YBVA 1NJKA 4RLWB 4ZRFA 3KVIA 3DOZA 2C2IA 5T07A 2EGJA 2GLLA 3E8PA 2B3MA 2OKHA 3DP0A 3BJKA 4U3VA 3KX8A 3EL6A 2PZHA 1ZHGA 4RLJB 4XY6A 5KL9A 5SZZA 5HMCA 3DP2A 2HBOA 4HZPA 2AV9A 4FQ9A 3E1EA 1WN3A 4FFUA 3QOOA 3AZ8A 5SZVA 1WLVA 4MOCA 4OOBA 1LO9A 1U1ZA 2GVHA 2OKIA 4GAKA 3CF9A 5EGLA 1VH9A 4E3EA 3DP3A 4IENA 5HWFA 3CJYA 5T02A 4RV2B 4A0YA 2O6TA 5DIOA 2VKZG 2BI0A 2HX5A 3R34A 4LN9A 4RLTA 4A0XA 2CYEA 3IR3A 3KG6A 3AZBA 4RLWA 3S6PA 5BP3A 1Q4UA 2GF6A 4GAHA 4I45A 4OOCA 2QWZA 3LW3A 4B0CA 3HDUA 4RLJA 4W78B 5E1VA 3SPSA 5HZ4A 2ESSA 2OIWA 3AZ9A 2OV9A 4K4AA 4XY5A 4KC5A 3BBJA 3BNVA 4A0ZA 4B0BA 3QY3A 1MKBA 2DSLA 3U0AA 3ZH5A 4WNBB 1PN2A 3P3IA 3B18A 5EO2A 3TEAA 2F3XA 3P2RA 3R32A 4QD7A 3R3AA 3LBEA 1BVQA 3KV8A 3AZAA 2O6BA 3P3FA 4RV2A 2F0XA 5BUXA 4I4JA 3KUWA 5BUYA 5EGJA 4MZQA 3DKZA 1OHFA 1C8UA 1WLUA 1SBKA 2CY9A 2OWNA 3ESIA 2PIMA 4K00A 5EP5A 3KG7A 4B0JA 4K4DA 2GLPA 5HMBA 4QFWA 1IXLA 4AE7A 4I82A 3HRQA 4ZW0A 3KUVA 4W78A 1SH8A 1YOCA 3KG9A 5T06A 3RQBA 3B7JA 3HM0A 3D04A 3NWZA 3Q62A 3R3DA 3ZH6A 4AE8A 3EXZA 4B0IA 3KX7A 3WEWA 2FS2A 2H4UA 4K02A 3DOYA 1Z6BA 2F41A 2VZ9A 3LMBA 3LWGA 4B8UA 4WNBA 1WM6A 5SZUA 3FRNA 2Q78A 2B6EA 1IQ6A 4H4GA 5CPGA 1TBUA 3HRRA 3LZ7A 3ZH7B 5SZYA 2Q2BA 4QDBA 4CL6A 3CF8A 2O5UA 5BP2A 1S5UA 2QQ2A 5DM5A 2EISA 3P2QA 4MOBA 2EGIA 1VPMA 4M20A 3KW1A 5KKUA 2QQPA 4RLUB 1VI8A 3D6LA 3R87A 2FUJA 2XFLA 1SC0A 2VZ8A 1LO7A 2W3XA 3R3CA 1YLIA 4RMMA 3RD7A 4A12A 2PRXA 3E29A 4ZJBA 4R4UA 3KG8A 3F1TA 3LBBA 4K49A 1LO8A 2NUJA
chains in the Genus database with same CATH topology
5E1VA 4U3VA 3EL6A 2VZ9A 4R9ZA 4KC5A 3BBJA 3FRNA 3U0AA 3ZH7A 3ZH5A 3B18A 3HRRA 3ZH7B 5BP2A 1OHFA 3CJYA 3KG7A 5KKUA 2VKZG 2QQPA 4QFWA 4LN9A 2VZ8A 3HMJG 3HRQA 3KG6A 3RD7A 2PFCA 3S6PA 5BP3A 3KG9A 4R4UA 3KG8A 3RQBA 3ZH6A 4OOCA 2UV8G
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3RD7 A;  3CJY A;  4R4U A;  3RQB A;  4R9Z A;  4QFW A;  3BBJ A;  3U0A A; 
#chains in the Genus database with same CATH topology
 1S9C A;  3R36 A;  3S4K A;  2HLJ A;  2O6U A;  4ORD A;  1MKA A;  2OAF A;  1Q4T A;  4ZV3 A;  5F6R A;  4R9Z A;  3KHP A;  1PSU A;  3R3F A;  3KVU A;  3B7K A;  4I83 A;  4QD9 A;  3ZH7 A;  5EGK A;  4QD8 A;  4K4B A;  2GLV A;  3CK1 A;  3OML A;  3R3B A;  1ZKI A;  3GEK A;  4NCP A;  1PN4 A;  4HZN A;  1Z54 A;  3K67 A;  5BUW A;  4KEH A;  2CWZ A;  2XEM A;  5BYU A;  3D6X A;  4K4C A;  3DP1 A;  1VH5 A;  3F5O A;  4RLU A;  3P2S A;  5EO4 A;  3R37 A;  4MTU A;  1Q4S A;  3KH8 A;  3R35 A;  5HD6 A;  1Y7U A;  4ZRB A;  2EGR A;  1Q6W A;  3HMJ G;  3KVZ A;  2PFC A;  2V1O A;  3ED0 A;  4HZO A;  4QDA A;  4RLT B;  1T82 A;  3KV7 A;  1J1Y A;  2UV8 G;  2GLM A;  4YBV A;  1NJK A;  4RLW B;  4ZRF A;  3KVI A;  3DOZ A;  2C2I A;  5T07 A;  2EGJ A;  2GLL A;  3E8P A;  2B3M A;  2OKH A;  3DP0 A;  3BJK A;  4U3V A;  3KX8 A;  3EL6 A;  2PZH A;  1ZHG A;  4RLJ B;  4XY6 A;  5KL9 A;  5SZZ A;  5HMC A;  3DP2 A;  2HBO A;  4HZP A;  2AV9 A;  4FQ9 A;  3E1E A;  1WN3 A;  4FFU A;  3QOO A;  3AZ8 A;  5SZV A;  1WLV A;  4MOC A;  4OOB A;  1LO9 A;  1U1Z A;  2GVH A;  2OKI A;  4GAK A;  3CF9 A;  5EGL A;  1VH9 A;  4E3E A;  3DP3 A;  4IEN A;  5HWF A;  3CJY A;  5T02 A;  4RV2 B;  4A0Y A;  2O6T A;  5DIO A;  2VKZ G;  2BI0 A;  2HX5 A;  3R34 A;  4LN9 A;  4RLT A;  4A0X A;  2CYE A;  3IR3 A;  3KG6 A;  3AZB A;  4RLW A;  3S6P A;  5BP3 A;  1Q4U A;  2GF6 A;  4GAH A;  4I45 A;  4OOC A;  2QWZ A;  3LW3 A;  4B0C A;  3HDU A;  4RLJ A;  4W78 B;  5E1V A;  3SPS A;  5HZ4 A;  2ESS A;  2OIW A;  3AZ9 A;  2OV9 A;  4K4A A;  4XY5 A;  4KC5 A;  3BBJ A;  3BNV A;  4A0Z A;  4B0B A;  3QY3 A;  1MKB A;  2DSL A;  3U0A A;  3ZH5 A;  4WNB B;  1PN2 A;  3P3I A;  3B18 A;  5EO2 A;  3TEA A;  2F3X A;  3P2R A;  3R32 A;  4QD7 A;  3R3A A;  3LBE A;  1BVQ A;  3KV8 A;  3AZA A;  2O6B A;  3P3F A;  4RV2 A;  2F0X A;  5BUX A;  4I4J A;  3KUW A;  5BUY A;  5EGJ A;  4MZQ A;  3DKZ A;  1OHF A;  1C8U A;  1WLU A;  1SBK A;  2CY9 A;  2OWN A;  3ESI A;  2PIM A;  4K00 A;  5EP5 A;  3KG7 A;  4B0J A;  4K4D A;  2GLP A;  5HMB A;  4QFW A;  1IXL A;  4AE7 A;  4I82 A;  3HRQ A;  4ZW0 A;  3KUV A;  4W78 A;  1SH8 A;  1YOC A;  3KG9 A;  5T06 A;  3RQB A;  3B7J A;  3HM0 A;  3D04 A;  3NWZ A;  3Q62 A;  3R3D A;  3ZH6 A;  4AE8 A;  3EXZ A;  4B0I A;  3KX7 A;  3WEW A;  2FS2 A;  2H4U A;  4K02 A;  3DOY A;  1Z6B A;  2F41 A;  2VZ9 A;  3LMB A;  3LWG A;  4B8U A;  4WNB A;  1WM6 A;  5SZU A;  3FRN A;  2Q78 A;  2B6E A;  1IQ6 A;  4H4G A;  5CPG A;  1TBU A;  3HRR A;  3LZ7 A;  3ZH7 B;  5SZY A;  2Q2B A;  4QDB A;  4CL6 A;  3CF8 A;  2O5U A;  5BP2 A;  1S5U A;  2QQ2 A;  5DM5 A;  2EIS A;  3P2Q A;  4MOB A;  2EGI A;  1VPM A;  4M20 A;  3KW1 A;  5KKU A;  2QQP A;  4RLU B;  1VI8 A;  3D6L A;  3R87 A;  2FUJ A;  2XFL A;  1SC0 A;  2VZ8 A;  1LO7 A;  2W3X A;  3R3C A;  1YLI A;  4RMM A;  3RD7 A;  4A12 A;  2PRX A;  3E29 A;  4ZJB A;  4R4U A;  3KG8 A;  3F1T A;  3LBB A;  4K49 A;  1LO8 A;  2NUJ A; 
#chains in the Genus database with same CATH homology
 5E1V A;  4U3V A;  3EL6 A;  2VZ9 A;  4R9Z A;  4KC5 A;  3BBJ A;  3FRN A;  3U0A A;  3ZH7 A;  3ZH5 A;  3B18 A;  3HRR A;  3ZH7 B;  5BP2 A;  1OHF A;  3CJY A;  3KG7 A;  5KKU A;  2VKZ G;  2QQP A;  4QFW A;  4LN9 A;  2VZ8 A;  3HMJ G;  3HRQ A;  3KG6 A;  3RD7 A;  2PFC A;  3S6P A;  5BP3 A;  3KG9 A;  4R4U A;  3KG8 A;  3RQB A;  3ZH6 A;  4OOC A;  2UV8 G; 
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