4XEI | Genus

Total Genus 48

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	48
sequence length	168
structure length	168
Chain Sequence	MTATLRPYLSAVRATLQAALCLENFSSQVVERHNKPEVEVRSSKELLLQPVTISRNEKEKVLIEGSINSVRVSIAVKQADEIEKILCHKFMRFMMMRAENFFILRRKPVEGYDISFLITNFHTEQMYKHKLVDFVIHFMEEIDKEISEMKLSVNARARIVAEEFLKNF

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Crystals of the Arp2/3 complex in two new space groups with structural information about actin-related protein 2 and potential WASP binding sites. pubmed doi rcsb
molecule keywords	Actin-related protein 3
molecule tags	Structural protein
total genus	48
structure length	168
sequence length	168
ec nomenclature
pdb deposition date	2014-12-23

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
F	PF05856	ARPC4	ARP2/3 complex 20 kDa subunit (ARPC4)

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.1460.20	Alpha Beta	2-Layer Sandwich	Yope Regulator; Chain: A,	Yope Regulator; Chain: A,	4xeiF00

2P9KF 3DWLD 3DWLF 2P9KD 3DXKD 3DXKF 2P9PD 2P9PF 2P9UF 2P9UD 3DXMF 3DXMD 3ULEF 3ULED 1K8KF 1K8KD 3RSED 3RSEF 2P9SD 2P9SF 2P9IF 2P9ID 3UKRF 4JD2D 4JD2F 3UKRD 2P9LD 2P9LF 4XEID 4XEIF 2P9ND 2P9NF 3UKUD 1TYQF 3UKUF 1U2VF 1U2VD 1TYQD
chains in the Genus database with same CATH superfamily

2P9KF 3DWLD 3DWLF 1S28A 2P9KD 1JYAA 3DXKD 3DXKF 2P9PD 1N5BA 2P9UF 2P9PF 2P9UD 3DXMF 3DXMD 3KXYA 4GF3A 1K8KF 1K8KD 1K6ZA 3ULED 3RSED 3CXJA 3RSEF 3ULEF 2P9SD 2P9SF 4GSLC 2P9IF 2P9ID 3UKUD 4JMFB 4AKXA 2DYTA 4G6TA 1RY9A 2OD0A 2BSJA 2MQDA 3UKUF 4H5BA 3VX8B 1K3EA 3UKRF 2BSIA 1L2WA 4JD2D 4JD2F 3UKRD 4EBRA 1JYOA 2P9LF 2FM8A 1TTWA 2P9LD 4XEID 4XEIF 3VX7B 3EPUA 2PLGA 2P9ND 2P9NF 2BSHA 1TYQF 1XKPC 2LPUA 1U2VF 1U2VD 2BHOA 1XKPB 1TYQD 3TU3A 1K3SA 2XGAA 2KC5A
chains in the Genus database with same CATH topology

2P9KF 3DWLD 3DWLF 1S28A 2P9KD 1JYAA 3DXKD 3DXKF 2P9PD 1N5BA 2P9UF 2P9PF 2P9UD 3DXMF 3DXMD 3KXYA 4GF3A 1K8KF 1K8KD 1K6ZA 3ULED 3RSED 3CXJA 3RSEF 3ULEF 2P9SD 2P9SF 4GSLC 2P9IF 2P9ID 3UKUD 4JMFB 4AKXA 2DYTA 4G6TA 1RY9A 2BSJA 2MQDA 3UKUF 4H5BA 3VX8B 1K3EA 3UKRF 2BSIA 1L2WA 4JD2D 4JD2F 3UKRD 4EBRA 1JYOA 2P9LF 2FM8A 1TTWA 2P9LD 4XEID 4XEIF 3VX7B 3EPUA 2PLGA 2P9ND 2P9NF 2BSHA 1TYQF 1XKPC 2LPUA 1U2VF 1U2VD 2BHOA 1XKPB 1TYQD 3TU3A 1K3SA 2XGAA 2KC5A
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2P9K F;  3DWL D;  3DWL F;  2P9K D;  3DXK D;  3DXK F;  2P9P D;  2P9P F;  2P9U F;  2P9U D;  3DXM F;  3DXM D;  3ULE F;  3ULE D;  1K8K F;  1K8K D;  3RSE D;  3RSE F;  2P9S D;  2P9S F;  2P9I F;  2P9I D;  3UKR F;  4JD2 D;  4JD2 F;  3UKR D;  2P9L D;  2P9L F;  4XEI D;  4XEI F;  2P9N D;  2P9N F;  3UKU D;  1TYQ F;  3UKU F;  1U2V F;  1U2V D;  1TYQ D; 
#chains in the Genus database with same CATH topology
 2P9K F;  3DWL D;  3DWL F;  1S28 A;  2P9K D;  1JYA A;  3DXK D;  3DXK F;  2P9P D;  1N5B A;  2P9U F;  2P9P F;  2P9U D;  3DXM F;  3DXM D;  3KXY A;  4GF3 A;  1K8K F;  1K8K D;  1K6Z A;  3ULE D;  3RSE D;  3CXJ A;  3RSE F;  3ULE F;  2P9S D;  2P9S F;  4GSL C;  2P9I F;  2P9I D;  3UKU D;  4JMF B;  4AKX A;  2DYT A;  4G6T A;  1RY9 A;  2OD0 A;  2BSJ A;  2MQD A;  3UKU F;  4H5B A;  3VX8 B;  1K3E A;  3UKR F;  2BSI A;  1L2W A;  4JD2 D;  4JD2 F;  3UKR D;  4EBR A;  1JYO A;  2P9L F;  2FM8 A;  1TTW A;  2P9L D;  4XEI D;  4XEI F;  3VX7 B;  3EPU A;  2PLG A;  2P9N D;  2P9N F;  2BSH A;  1TYQ F;  1XKP C;  2LPU A;  1U2V F;  1U2V D;  2BHO A;  1XKP B;  1TYQ D;  3TU3 A;  1K3S A;  2XGA A;  2KC5 A; 
#chains in the Genus database with same CATH homology
 2P9K F;  3DWL D;  3DWL F;  1S28 A;  2P9K D;  1JYA A;  3DXK D;  3DXK F;  2P9P D;  1N5B A;  2P9U F;  2P9P F;  2P9U D;  3DXM F;  3DXM D;  3KXY A;  4GF3 A;  1K8K F;  1K8K D;  1K6Z A;  3ULE D;  3RSE D;  3CXJ A;  3RSE F;  3ULE F;  2P9S D;  2P9S F;  4GSL C;  2P9I F;  2P9I D;  3UKU D;  4JMF B;  4AKX A;  2DYT A;  4G6T A;  1RY9 A;  2BSJ A;  2MQD A;  3UKU F;  4H5B A;  3VX8 B;  1K3E A;  3UKR F;  2BSI A;  1L2W A;  4JD2 D;  4JD2 F;  3UKR D;  4EBR A;  1JYO A;  2P9L F;  2FM8 A;  1TTW A;  2P9L D;  4XEI D;  4XEI F;  3VX7 B;  3EPU A;  2PLG A;  2P9N D;  2P9N F;  2BSH A;  1TYQ F;  1XKP C;  2LPU A;  1U2V F;  1U2V D;  2BHO A;  1XKP B;  1TYQ D;  3TU3 A;  1K3S A;  2XGA A;  2KC5 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4XEIF

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations