4YZG | Genus

Total Genus 94

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	94
sequence length	294
structure length	294
Chain Sequence	MRWGYTSVQGFRDEMEDDIVIRSDAVDSFSYAAVFDGHAGSSSVKFLREELYKECVGALQAGSLLNGGDFAAIKEALIKAFESVDRNLLKWLEANGDEEDESGSTATVMIIRNDVSFIAHIGDSCAVLSRSGQIEELTDYHRPYGSSRAAIQEVKRVKEAGGWIVNGRICGDIAVSRAFGDIRFKTKKNDMLKKGVDEGRWSEKFVSRIEFKGDMVVATPDIFQVPLTSDVEFIILASDGLWDYMKSSDVVSYVRDQLRKHGNVQLACESLAQVALDRRSQDNISIIIADLGRT

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 294 atoms

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294 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Hydrolase
source organism	Arabidopsis thaliana
publication title	Structural Mechanism Underlying the Specific Recognition between the Arabidopsis State-Transition Phosphatase TAP38/PPH1 and Phosphorylated Light-Harvesting Complex Protein Lhcb1 pubmed doi rcsb
molecule keywords	Protein phosphatase 2C 57
total genus	94
structure length	294
sequence length	294
chains with identical sequence	B
ec nomenclature	ec 3.1.3.16: Protein-serine/threonine phosphatase.
pdb deposition date	2015-03-25

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.60.40.10	Alpha Beta	4-Layer Sandwich	Phosphatase 2c; domain 1	PPM-type phosphatase domain	4yzgA00

3FXMA 3NMTB 3W43A 3N3CA 3JRQA 3KDJB 4DS8B 2J82A 2Y09A 3EQ2A 3ZVUB 4LGAB 2I0OA 3UJKA 3W41A 2POMA 3W40A 2P8EA 4RAGA 2J4OA 5F1MA 2IQ1A 5ITIA 3FXLA 3D8KA 2XZVA 3FXJA 1TXOA 3QN1B 4LG5B 3W42A 1A6QA 3MQ3A 2JFTA 4LA7B 2ISNA 3UJLB 3KB3B 3W45A 4JNDA 2V06A 2I44A 3UJGB 3NMNB 3PU9A 2PNQA 3T91A 5D2UA 3ZT9A 3F79A 3T9QA 2PK0A 2JFRA 5JO1B 4LGBB 2IRMA 4WVOB 4RA2A 2CM1A 2J86A 2JFSA 4OICB 3KE6A 3NMVB 4N0GA 4RAFA 5JO2B 4YZGA 4YZHA 3FXKA 4DA1A 3RT0A 3ES2A 3FXOA 3RNRA 3W44A 2POPA
chains in the Genus database with same CATH superfamily

4IIKA 3FXMA 3NMTB 3W43A 3N3CA 3JRQA 3KDJB 4DS8B 2J82A 2Y09A 3EQ2A 3ZVUB 4LGAB 2I0OA 3UJKA 3W41A 2POMA 3W40A 2P8EA 4RAGA 2J4OA 5F1MA 2IQ1A 5ITIA 3FXLA 3D8KA 2XZVA 3FXJA 1TXOA 3QN1B 4LG5B 3W42A 1A6QA 3MQ3A 2JFTA 4LA7B 2ISNA 3UJLB 3KB3B 3W45A 4JNDA 2V06A 2I44A 3UJGB 3NMNB 3PU9A 2PNQA 3T91A 4IIPA 5D2UA 3ZT9A 3F79A 3T9QA 2PK0A 2JFRA 5JO1B 4LGBB 2IRMA 4WVOB 4RA2A 2CM1A 2J86A 2JFSA 4OICB 3KE6A 3NMVB 4N0GA 4RAFA 5JO2B 4YZGA 4YZHA 3FXKA 4DA1A 3RT0A 3ES2A 3FXOA 3RNRA 3W44A 2POPA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3FXM A;  3NMT B;  3W43 A;  3N3C A;  3JRQ A;  3KDJ B;  4DS8 B;  2J82 A;  2Y09 A;  3EQ2 A;  3ZVU B;  4LGA B;  2I0O A;  3UJK A;  3W41 A;  2POM A;  3W40 A;  2P8E A;  4RAG A;  2J4O A;  5F1M A;  2IQ1 A;  5ITI A;  3FXL A;  3D8K A;  2XZV A;  3FXJ A;  1TXO A;  3QN1 B;  4LG5 B;  3W42 A;  1A6Q A;  3MQ3 A;  2JFT A;  4LA7 B;  2ISN A;  3UJL B;  3KB3 B;  3W45 A;  4JND A;  2V06 A;  2I44 A;  3UJG B;  3NMN B;  3PU9 A;  2PNQ A;  3T91 A;  5D2U A;  3ZT9 A;  3F79 A;  3T9Q A;  2PK0 A;  2JFR A;  5JO1 B;  4LGB B;  2IRM A;  4WVO B;  4RA2 A;  2CM1 A;  2J86 A;  2JFS A;  4OIC B;  3KE6 A;  3NMV B;  4N0G A;  4RAF A;  5JO2 B;  4YZG A;  4YZH A;  3FXK A;  4DA1 A;  3RT0 A;  3ES2 A;  3FXO A;  3RNR A;  3W44 A;  2POP A; 
#chains in the Genus database with same CATH topology
 4IIK A;  3FXM A;  3NMT B;  3W43 A;  3N3C A;  3JRQ A;  3KDJ B;  4DS8 B;  2J82 A;  2Y09 A;  3EQ2 A;  3ZVU B;  4LGA B;  2I0O A;  3UJK A;  3W41 A;  2POM A;  3W40 A;  2P8E A;  4RAG A;  2J4O A;  5F1M A;  2IQ1 A;  5ITI A;  3FXL A;  3D8K A;  2XZV A;  3FXJ A;  1TXO A;  3QN1 B;  4LG5 B;  3W42 A;  1A6Q A;  3MQ3 A;  2JFT A;  4LA7 B;  2ISN A;  3UJL B;  3KB3 B;  3W45 A;  4JND A;  2V06 A;  2I44 A;  3UJG B;  3NMN B;  3PU9 A;  2PNQ A;  3T91 A;  4IIP A;  5D2U A;  3ZT9 A;  3F79 A;  3T9Q A;  2PK0 A;  2JFR A;  5JO1 B;  4LGB B;  2IRM A;  4WVO B;  4RA2 A;  2CM1 A;  2J86 A;  2JFS A;  4OIC B;  3KE6 A;  3NMV B;  4N0G A;  4RAF A;  5JO2 B;  4YZG A;  4YZH A;  3FXK A;  4DA1 A;  3RT0 A;  3ES2 A;  3FXO A;  3RNR A;  3W44 A;  2POP A; 
#chains in the Genus database with same CATH homology
 3FXM A;  3NMT B;  3W43 A;  3N3C A;  3JRQ A;  3KDJ B;  4DS8 B;  2J82 A;  2Y09 A;  3EQ2 A;  3ZVU B;  4LGA B;  2I0O A;  3UJK A;  3W41 A;  2POM A;  3W40 A;  2P8E A;  4RAG A;  2J4O A;  5F1M A;  2IQ1 A;  5ITI A;  3FXL A;  3D8K A;  2XZV A;  3FXJ A;  1TXO A;  3QN1 B;  4LG5 B;  3W42 A;  1A6Q A;  3MQ3 A;  2JFT A;  4LA7 B;  2ISN A;  3UJL B;  3KB3 B;  3W45 A;  4JND A;  2V06 A;  2I44 A;  3UJG B;  3NMN B;  3PU9 A;  2PNQ A;  3T91 A;  5D2U A;  3ZT9 A;  3F79 A;  3T9Q A;  2PK0 A;  2JFR A;  5JO1 B;  4LGB B;  2IRM A;  4WVO B;  4RA2 A;  2CM1 A;  2J86 A;  2JFS A;  4OIC B;  3KE6 A;  3NMV B;  4N0G A;  4RAF A;  5JO2 B;  4YZG A;  4YZH A;  3FXK A;  4DA1 A;  3RT0 A;  3ES2 A;  3FXO A;  3RNR A;  3W44 A;  2POP A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

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#similar chains, but unknotted
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4YZGA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN