4YZH | Genus

Total Genus 95

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	95
sequence length	294
structure length	294
Chain Sequence	MRWGYTSVQGFRDEMEDDIVIRSDAVDSFSYAAVFDGHAGSSSVKFLREELYKECVGALQAGSLLNGGDFAAIKEALIKAFESVDRNLLKWLEANGDEEDESGSTATVMIIRNDVSFIAHIGESCAVLSRSGQIEELTDYHRPYGSSRAAIQEVKRVKEAGGWIVNGRICGDIAVSRAFGDIRFKTKKNDMLKKGVDEGRWSEKFVSRIEFKGDMVVATPDIFQVPLTSDVEFIILASDGLWDYMKSSDVVSYVRDQLRKHGNVQLACESLAQVALDRRSQDNISIIIADLGRT

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 294 atoms

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1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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294 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Hydrolase/hydrolase substrate
source organism	Arabidopsis thaliana
publication title	Structural Mechanism Underlying the Specific Recognition between the Arabidopsis State-Transition Phosphatase TAP38/PPH1 and Phosphorylated Light-Harvesting Complex Protein Lhcb1 pubmed doi rcsb
molecule keywords	Protein phosphatase 2C 57
total genus	95
structure length	294
sequence length	294
ec nomenclature	ec 3.1.3.16: Protein-serine/threonine phosphatase.
pdb deposition date	2015-03-25

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.60.40.10	Alpha Beta	4-Layer Sandwich	Phosphatase 2c; domain 1	PPM-type phosphatase domain	4yzhA00

2IRMA 4LG5B 3NMNB 2J82A 3MQ3A 4RAGA 3NMVB 4DA1A 4JNDA 2CM1A 2I0OA 3W43A 3ES2A 5D2UA 3NMTB 2P8EA 3FXJA 3FXLA 3KDJB 4YZHA 3UJLB 4LA7B 3QN1B 3W41A 3ZT9A 2PK0A 3W42A 4DS8B 2PNQA 3W44A 3KB3B 3T9QA 2XZVA 3F79A 2JFRA 3KE6A 4LGBB 5ITIA 3JRQA 3UJGB 2J4OA 5JO1B 4RA2A 2V06A 1TXOA 3W45A 2JFSA 3PU9A 4LGAB 2POMA 3T91A 4N0GA 3FXMA 2J86A 4OICB 3ZVUB 3FXOA 3N3CA 3W40A 4YZGA 2Y09A 4RAFA 2I44A 2ISNA 3UJKA 2JFTA 5F1MA 1A6QA 3RNRA 3FXKA 3D8KA 3RT0A 5JO2B 4WVOB 2IQ1A 2POPA 3EQ2A
chains in the Genus database with same CATH superfamily

2IRMA 4LG5B 3NMNB 2J82A 3MQ3A 4RAGA 3NMVB 4DA1A 4JNDA 2CM1A 2I0OA 3W43A 3ES2A 5D2UA 3NMTB 2P8EA 3FXJA 3FXLA 3KDJB 4YZHA 3UJLB 4LA7B 3QN1B 3W41A 3ZT9A 2PK0A 4IIPA 3W42A 4DS8B 2PNQA 3W44A 3KB3B 3T9QA 2XZVA 3F79A 2JFRA 3KE6A 4LGBB 5ITIA 3JRQA 3UJGB 2J4OA 5JO1B 4RA2A 2V06A 1TXOA 3W45A 2JFSA 3PU9A 4LGAB 2POMA 3T91A 4N0GA 3FXMA 2J86A 4OICB 3ZVUB 3FXOA 3N3CA 3W40A 4YZGA 2Y09A 4RAFA 2I44A 2ISNA 3UJKA 2JFTA 5F1MA 1A6QA 3RNRA 3FXKA 3D8KA 4IIKA 3RT0A 5JO2B 4WVOB 2IQ1A 2POPA 3EQ2A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 2IRM A;  4LG5 B;  3NMN B;  2J82 A;  3MQ3 A;  4RAG A;  3NMV B;  4DA1 A;  4JND A;  2CM1 A;  2I0O A;  3W43 A;  3ES2 A;  5D2U A;  3NMT B;  2P8E A;  3FXJ A;  3FXL A;  3KDJ B;  4YZH A;  3UJL B;  4LA7 B;  3QN1 B;  3W41 A;  3ZT9 A;  2PK0 A;  3W42 A;  4DS8 B;  2PNQ A;  3W44 A;  3KB3 B;  3T9Q A;  2XZV A;  3F79 A;  2JFR A;  3KE6 A;  4LGB B;  5ITI A;  3JRQ A;  3UJG B;  2J4O A;  5JO1 B;  4RA2 A;  2V06 A;  1TXO A;  3W45 A;  2JFS A;  3PU9 A;  4LGA B;  2POM A;  3T91 A;  4N0G A;  3FXM A;  2J86 A;  4OIC B;  3ZVU B;  3FXO A;  3N3C A;  3W40 A;  4YZG A;  2Y09 A;  4RAF A;  2I44 A;  2ISN A;  3UJK A;  2JFT A;  5F1M A;  1A6Q A;  3RNR A;  3FXK A;  3D8K A;  3RT0 A;  5JO2 B;  4WVO B;  2IQ1 A;  2POP A;  3EQ2 A; 
#chains in the Genus database with same CATH topology
 2IRM A;  4LG5 B;  3NMN B;  2J82 A;  3MQ3 A;  4RAG A;  3NMV B;  4DA1 A;  4JND A;  2CM1 A;  2I0O A;  3W43 A;  3ES2 A;  5D2U A;  3NMT B;  2P8E A;  3FXJ A;  3FXL A;  3KDJ B;  4YZH A;  3UJL B;  4LA7 B;  3QN1 B;  3W41 A;  3ZT9 A;  2PK0 A;  4IIP A;  3W42 A;  4DS8 B;  2PNQ A;  3W44 A;  3KB3 B;  3T9Q A;  2XZV A;  3F79 A;  2JFR A;  3KE6 A;  4LGB B;  5ITI A;  3JRQ A;  3UJG B;  2J4O A;  5JO1 B;  4RA2 A;  2V06 A;  1TXO A;  3W45 A;  2JFS A;  3PU9 A;  4LGA B;  2POM A;  3T91 A;  4N0G A;  3FXM A;  2J86 A;  4OIC B;  3ZVU B;  3FXO A;  3N3C A;  3W40 A;  4YZG A;  2Y09 A;  4RAF A;  2I44 A;  2ISN A;  3UJK A;  2JFT A;  5F1M A;  1A6Q A;  3RNR A;  3FXK A;  3D8K A;  4IIK A;  3RT0 A;  5JO2 B;  4WVO B;  2IQ1 A;  2POP A;  3EQ2 A; 
#chains in the Genus database with same CATH homology
 2IRM A;  4LG5 B;  3NMN B;  2J82 A;  3MQ3 A;  4RAG A;  3NMV B;  4DA1 A;  4JND A;  2CM1 A;  2I0O A;  3W43 A;  3ES2 A;  5D2U A;  3NMT B;  2P8E A;  3FXJ A;  3FXL A;  3KDJ B;  4YZH A;  3UJL B;  4LA7 B;  3QN1 B;  3W41 A;  3ZT9 A;  2PK0 A;  3W42 A;  4DS8 B;  2PNQ A;  3W44 A;  3KB3 B;  3T9Q A;  2XZV A;  3F79 A;  2JFR A;  3KE6 A;  4LGB B;  5ITI A;  3JRQ A;  3UJG B;  2J4O A;  5JO1 B;  4RA2 A;  2V06 A;  1TXO A;  3W45 A;  2JFS A;  3PU9 A;  4LGA B;  2POM A;  3T91 A;  4N0G A;  3FXM A;  2J86 A;  4OIC B;  3ZVU B;  3FXO A;  3N3C A;  3W40 A;  4YZG A;  2Y09 A;  4RAF A;  2I44 A;  2ISN A;  3UJK A;  2JFT A;  5F1M A;  1A6Q A;  3RNR A;  3FXK A;  3D8K A;  3RT0 A;  5JO2 B;  4WVO B;  2IQ1 A;  2POP A;  3EQ2 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

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#similar chains, but unknotted
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4YZHA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN